Wall clock time and date at job start Sun Mar 29 2020 22:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47391 * 2 1 4 4 C 1.52998 * 109.47187 * 120.00635 * 2 1 3 5 5 C 1.47208 * 109.47026 * 185.00287 * 4 2 1 6 6 N 3.43547 * 154.82642 * 111.57399 * 2 1 3 7 7 N 1.46911 * 109.47257 * 240.00418 * 2 1 3 8 8 C 1.46902 * 110.99614 * 84.99924 * 7 2 1 9 9 C 1.53006 * 109.46626 * 205.00042 * 8 7 2 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46991 * 60.00378 * 10 9 8 12 12 C 1.50712 * 109.46964 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99399 * 120.00337 * 12 11 10 14 14 C 1.37873 * 120.00090 * 299.99625 * 12 11 10 15 15 N 1.31513 * 119.99900 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00000 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47443 * 89.99551 * 16 14 12 18 18 H 1.48503 * 109.46856 * 209.99710 * 16 14 12 19 19 H 1.48504 * 109.47327 * 329.99323 * 16 14 12 20 20 C 1.52996 * 109.47131 * 299.99311 * 11 10 9 21 21 C 1.52997 * 109.47094 * 85.00357 * 8 7 2 22 22 H 1.09005 * 109.46824 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47175 * 299.99462 * 1 2 3 24 24 H 1.09002 * 109.47293 * 59.99853 * 1 2 3 25 25 H 1.08999 * 109.47339 * 304.99662 * 4 2 1 26 26 H 1.08996 * 109.47513 * 65.00196 * 4 2 1 27 27 H 1.00897 * 110.99488 * 321.04540 * 7 2 1 28 28 H 1.09001 * 109.47582 * 324.99627 * 8 7 2 29 29 H 1.08993 * 109.46955 * 300.00347 * 9 8 7 30 30 H 1.09000 * 109.47050 * 60.00176 * 9 8 7 31 31 H 1.09002 * 109.46719 * 180.02562 * 10 9 8 32 32 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 33 33 H 1.09000 * 109.47611 * 59.99933 * 11 10 9 34 34 H 0.97002 * 120.00002 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.47452 * 300.00000 * 20 11 10 36 36 H 1.09000 * 109.47054 * 180.02562 * 20 11 10 37 37 H 1.09002 * 109.47153 * 299.99508 * 21 8 7 38 38 H 1.08996 * 109.46952 * 59.99680 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5071 -0.6174 1.3112 6 7 4.6392 -0.5373 1.3589 7 7 2.0197 -0.6924 -1.1996 8 6 2.0825 0.2228 -2.3469 9 6 1.9770 -0.5795 -3.6455 10 6 2.0417 0.3738 -4.8404 11 6 3.3701 1.1326 -4.8161 12 6 3.4341 2.0712 -5.9936 13 1 3.5394 3.1337 -5.8319 14 6 3.3584 1.5732 -7.2770 15 7 3.4138 2.3923 -8.3044 16 14 3.1758 -0.2647 -7.5565 17 1 1.7341 -0.6180 -7.6003 18 1 3.8157 -0.6354 -8.8444 19 1 3.8327 -1.0018 -6.4473 20 6 3.4755 1.9348 -3.5176 21 6 3.4111 0.9811 -2.3223 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6054 -0.2620 2.1369 26 1 1.7517 -1.7716 1.2054 27 1 1.4496 -1.4978 -1.4101 28 1 1.2576 0.9331 -2.2907 29 1 2.8018 -1.2898 -3.7017 30 1 1.0305 -1.1197 -3.6630 31 1 1.9662 -0.1976 -5.7656 32 1 1.2167 1.0838 -4.7841 33 1 4.1952 0.4226 -4.8727 34 1 3.3602 2.0421 -9.2074 35 1 2.6505 2.6448 -3.4612 36 1 4.4217 2.4757 -3.5005 37 1 3.4862 1.5526 -1.3972 38 1 4.2359 0.2707 -2.3786 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:37 Heat of formation + Delta-G solvation = -19.177742 kcal Electronic energy + Delta-G solvation = -17026.828797 eV Core-core repulsion = 14481.231981 eV Total energy + Delta-G solvation = -2545.596816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12070 -38.13303 -36.70518 -34.71672 -32.77003 -31.66395 -29.66658 -28.62533 -25.86984 -23.83636 -22.30631 -21.64422 -20.53894 -18.76308 -18.49157 -17.20028 -16.51644 -15.93569 -15.61735 -15.00486 -14.91169 -14.83967 -14.65021 -14.42346 -14.09321 -13.73015 -13.33712 -13.17905 -13.09410 -12.77770 -12.72071 -12.43361 -12.16896 -12.08452 -11.97112 -11.77505 -11.73239 -11.52822 -11.24486 -10.91119 -10.73811 -10.51254 -9.24762 -8.30340 -6.33580 1.27844 1.35478 1.46166 2.02715 2.09011 2.32285 3.05150 3.18183 3.36674 3.86248 3.96400 4.18366 4.32603 4.36282 4.45058 4.50460 4.54858 4.71652 4.72545 4.76943 4.78536 4.88500 4.94989 4.99991 5.10367 5.13791 5.19386 5.30403 5.37421 5.44611 5.48406 5.59134 5.70743 5.81878 6.19905 6.32763 6.68303 6.74131 6.88872 7.32065 8.86953 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.037413 B = 0.005926 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.222452 B = 4724.013662 C = 4901.231303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.083 3.917 3 H 0.071 0.929 4 C -0.011 4.011 5 C 0.242 3.758 6 N -0.520 5.520 7 N -0.692 5.692 8 C 0.106 3.894 9 C -0.113 4.113 10 C -0.115 4.115 11 C 0.013 3.987 12 C -0.520 4.520 13 H 0.029 0.971 14 C 0.009 3.991 15 N -0.953 5.953 16 Si 0.953 3.047 17 H -0.261 1.261 18 H -0.302 1.302 19 H -0.250 1.250 20 C -0.094 4.094 21 C -0.093 4.093 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.046 0.954 25 H 0.148 0.852 26 H 0.134 0.866 27 H 0.354 0.646 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.013 0.987 34 H 0.265 0.735 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -9.818 19.703 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.028 4.028 3 H 0.089 0.911 4 C -0.051 4.051 5 C -0.074 4.074 6 N -0.198 5.198 7 N -0.325 5.325 8 C -0.004 4.004 9 C -0.151 4.151 10 C -0.153 4.153 11 C -0.006 4.006 12 C -0.558 4.558 13 H 0.047 0.953 14 C -0.188 4.188 15 N -0.594 5.594 16 Si 0.780 3.220 17 H -0.186 1.186 18 H -0.230 1.230 19 H -0.174 1.174 20 C -0.132 4.132 21 C -0.131 4.131 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.065 0.935 25 H 0.165 0.835 26 H 0.152 0.848 27 H 0.175 0.825 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.711 -9.613 19.785 23.659 hybrid contribution -0.837 -0.004 -1.351 1.589 sum -9.548 -9.617 18.434 22.880 Atomic orbital electron populations 1.22396 0.93842 1.03793 1.03153 1.21614 0.94617 0.97681 0.88936 0.91111 1.19724 0.79102 1.05976 1.00266 1.29871 0.96037 0.91082 0.90421 1.81222 1.15667 1.11246 1.11668 1.60542 1.58289 1.10024 1.03619 1.21245 0.96139 0.93662 0.89319 1.21684 1.02200 0.97625 0.93609 1.21788 0.99104 0.97780 0.96624 1.19110 0.93874 0.94367 0.93246 1.21471 1.49064 0.93956 0.91296 0.95263 1.25922 0.94411 1.02698 0.95736 1.70064 1.52996 1.37194 0.99169 0.85775 0.78901 0.80517 0.76810 1.18646 1.22974 1.17430 1.21345 1.00013 0.97602 0.94257 1.21437 0.97914 0.97295 0.96489 0.90248 0.89766 0.93450 0.83483 0.84772 0.82501 0.92947 0.92445 0.90009 0.94834 0.92459 0.96876 0.92640 0.93025 0.94410 0.92580 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.15 71.98 0.66 -0.70 16 2 C 0.08 1.04 2.37 44.91 0.11 1.14 16 3 H 0.07 1.15 7.11 -2.39 -0.02 1.14 16 4 C -0.01 -0.09 5.39 28.79 0.16 0.07 16 5 C 0.24 4.96 15.15 89.45 1.35 6.32 16 6 N -0.52 -15.43 18.54 20.01 0.37 -15.06 16 7 N -0.69 -12.88 5.76 -469.44 -2.70 -15.58 16 8 C 0.11 2.76 2.30 44.92 0.10 2.86 16 9 C -0.11 -3.37 5.19 30.60 0.16 -3.21 16 10 C -0.11 -4.63 4.68 30.59 0.14 -4.48 16 11 C 0.01 0.61 1.69 -11.54 -0.02 0.59 16 12 C -0.52 -30.51 9.14 25.60 0.23 -30.27 16 13 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 14 C 0.01 0.52 5.45 84.65 0.46 0.98 16 15 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 16 Si 0.95 46.06 24.37 68.60 1.67 47.74 16 17 H -0.26 -11.71 6.87 99.48 0.68 -11.03 16 18 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 19 H -0.25 -11.39 6.53 99.48 0.65 -10.74 16 20 C -0.09 -3.82 5.15 30.61 0.16 -3.66 16 21 C -0.09 -3.04 5.41 30.61 0.17 -2.88 16 22 H 0.08 0.38 8.13 -2.38 -0.02 0.36 16 23 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.05 0.56 7.43 -2.39 -0.02 0.54 16 25 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.35 5.11 8.09 -89.70 -0.73 4.39 16 28 H 0.05 1.33 7.11 -2.39 -0.02 1.31 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 31 H 0.03 1.43 3.27 -2.39 -0.01 1.43 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 34 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.70 7.43 -2.39 -0.02 1.69 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -75.52 299.52 3.55 -71.97 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.23 Total: 4.99 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.68 Total: -33.26 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -2.03 Total: -91.43 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.74 kcal Total: -75.52 3.55 -71.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.793 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds