Wall clock time and date at job start Sun Mar 29 2020 22:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46814 * 2 1 4 4 C 1.47201 * 109.46921 * 119.99743 * 2 1 3 5 5 N 2.60798 * 109.47158 * 119.99730 * 2 1 3 6 6 N 1.46893 * 109.47339 * 240.00065 * 2 1 3 7 7 C 1.46905 * 111.00094 * 297.62099 * 6 2 1 8 8 C 1.46897 * 110.99997 * 173.67072 * 6 2 1 9 9 C 1.52994 * 109.47145 * 297.98915 * 8 6 2 10 10 C 1.53004 * 109.47393 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47182 * 60.00041 * 10 9 8 12 12 C 1.50702 * 109.47191 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00410 * 119.99979 * 12 11 10 14 14 C 1.37880 * 119.99583 * 299.99455 * 12 11 10 15 15 N 1.31522 * 120.00128 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99894 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47344 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46892 * 120.00208 * 16 14 12 19 19 H 1.48494 * 109.47820 * 240.00505 * 16 14 12 20 20 C 1.53003 * 109.47139 * 300.00219 * 11 10 9 21 21 C 1.53002 * 109.47070 * 177.99177 * 8 6 2 22 22 H 1.08994 * 109.46822 * 186.18907 * 1 2 3 23 23 H 1.09002 * 109.46769 * 66.19155 * 1 2 3 24 24 H 1.08995 * 109.46981 * 306.19064 * 1 2 3 25 25 H 1.09006 * 109.46628 * 60.00080 * 7 6 2 26 26 H 1.08996 * 109.47441 * 180.02562 * 7 6 2 27 27 H 1.09003 * 109.47045 * 300.00578 * 7 6 2 28 28 H 1.09001 * 109.47441 * 57.99325 * 8 6 2 29 29 H 1.09002 * 109.47565 * 300.00034 * 9 8 6 30 30 H 1.08997 * 109.47428 * 60.00056 * 9 8 6 31 31 H 1.09001 * 109.47058 * 299.99785 * 10 9 8 32 32 H 1.08999 * 109.47523 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.47334 * 59.99912 * 11 10 9 34 34 H 0.96998 * 119.99401 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.47037 * 300.00516 * 20 11 10 36 36 H 1.08988 * 109.47344 * 180.02562 * 20 11 10 37 37 H 1.09002 * 109.47552 * 299.99689 * 21 8 6 38 38 H 1.09001 * 109.47334 * 59.99540 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2293 2.1295 6 7 2.0197 -0.6924 -1.1994 7 6 1.5958 -2.0990 -1.2052 8 6 3.4803 -0.5825 -1.3113 9 6 3.8716 0.8899 -1.4514 10 6 5.3929 1.0045 -1.5686 11 6 5.8693 0.2309 -2.7996 12 6 7.3677 0.3432 -2.9147 13 1 7.9794 -0.5465 -2.8905 14 6 7.9576 1.5819 -3.0509 15 7 7.2128 2.6655 -3.0800 16 14 9.8150 1.7213 -3.1929 17 1 10.4192 0.3660 -3.1328 18 1 10.1659 2.3623 -4.4857 19 1 10.3366 2.5462 -2.0737 20 6 5.4780 -1.2416 -2.6595 21 6 3.9572 -1.3562 -2.5421 22 1 -0.3633 -1.0216 0.1108 23 1 -0.3633 0.4149 -0.9402 24 1 -0.3633 0.6068 0.8293 25 1 0.5070 -2.1503 -1.1921 26 1 1.9721 -2.5882 -2.1036 27 1 1.9939 -2.6021 -0.3240 28 1 3.9456 -0.9987 -0.4177 29 1 3.4065 1.3062 -2.3450 30 1 3.5319 1.4412 -0.5746 31 1 5.8585 0.5883 -0.6752 32 1 5.6717 2.0535 -1.6679 33 1 5.4037 0.6471 -3.6930 34 1 7.6279 3.5369 -3.1754 35 1 5.9435 -1.6579 -1.7661 36 1 5.8177 -1.7928 -3.5362 37 1 3.6785 -2.4053 -2.4423 38 1 3.4919 -0.9401 -3.4356 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:43 Heat of formation + Delta-G solvation = 15.563317 kcal Electronic energy + Delta-G solvation = -17272.325984 eV Core-core repulsion = 14728.235654 eV Total energy + Delta-G solvation = -2544.090330 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.47450 -36.85717 -35.27066 -32.73773 -31.08164 -30.09993 -28.42675 -26.29457 -24.41245 -22.84406 -21.45658 -20.43061 -18.83967 -17.22889 -16.54598 -16.08282 -15.15292 -14.51855 -14.19771 -13.90442 -13.35693 -13.29330 -13.05846 -12.77111 -12.54872 -12.41807 -12.31489 -11.86141 -11.82633 -11.42286 -11.23672 -10.98784 -10.80982 -10.60544 -10.58847 -10.35055 -10.17878 -9.80162 -9.35054 -8.86840 -8.64984 -8.49606 -8.27630 -5.95920 -4.01468 2.70024 2.78359 3.30852 3.39181 3.43132 3.81493 4.05723 4.46320 4.90539 5.03111 5.14715 5.31600 5.36075 5.46086 5.55350 5.57730 5.75071 5.83297 5.84667 6.01018 6.12597 6.25853 6.33652 6.40389 6.46574 6.66190 6.76236 6.91518 7.02157 7.11225 7.19705 7.30197 7.53086 7.53465 7.77964 8.04930 8.17629 8.50232 9.02802 9.63146 11.09727 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040336 B = 0.005872 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.997930 B = 4767.344550 C = 4907.647309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.166 3.834 3 H 0.129 0.871 4 C 0.181 3.819 5 N -0.436 5.436 6 N -0.513 5.513 7 C 0.010 3.990 8 C 0.082 3.918 9 C -0.109 4.109 10 C -0.109 4.109 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.108 4.108 21 C -0.108 4.108 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.258 0.742 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.068 -4.210 2.606 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.054 3.946 3 H 0.147 0.853 4 C -0.140 4.140 5 N -0.113 5.113 6 N -0.236 5.236 7 C -0.138 4.138 8 C -0.025 4.025 9 C -0.147 4.147 10 C -0.147 4.147 11 C 0.030 3.970 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.146 4.146 21 C -0.146 4.146 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.685 -4.601 3.549 13.953 hybrid contribution 1.337 -0.094 0.402 1.399 sum -11.348 -4.695 3.951 12.901 Atomic orbital electron populations 1.21833 0.91392 1.02799 1.03767 1.19859 0.96640 0.98637 0.79450 0.85318 1.30782 0.93541 0.94281 0.95363 1.81134 1.08848 1.09634 1.11729 1.62570 1.14092 1.14054 1.32914 1.22599 1.01133 0.88525 1.01528 1.21895 0.83867 0.98732 0.98033 1.21743 0.99844 0.92485 1.00629 1.21617 0.89761 1.04780 0.98547 1.18660 0.95306 0.88757 0.94238 1.21280 0.92034 0.92393 1.49295 0.92843 1.24958 0.97752 0.96003 0.95275 1.69880 1.34542 0.97777 1.50757 0.86612 0.86233 0.78026 0.77572 1.19899 1.21071 1.21131 1.21623 0.92125 1.00832 1.00070 1.21669 0.98117 0.97677 0.97128 0.92133 0.89505 0.91462 0.90993 0.89989 0.95866 0.94536 0.91453 0.94017 0.95136 0.88700 0.95429 0.93161 0.93716 0.93151 0.93475 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.80 37.16 0.33 -0.81 16 2 C 0.17 1.90 2.62 -70.50 -0.19 1.71 16 3 H 0.13 1.42 6.05 -51.93 -0.31 1.10 16 4 C 0.18 2.55 12.05 -20.76 -0.25 2.30 16 5 N -0.44 -7.26 18.54 42.15 0.78 -6.48 16 6 N -0.51 -6.67 4.61 -230.28 -1.06 -7.73 16 7 C 0.01 0.12 8.51 60.07 0.51 0.63 16 8 C 0.08 1.33 1.75 -67.72 -0.12 1.21 16 9 C -0.11 -1.97 5.04 -26.73 -0.13 -2.10 16 10 C -0.11 -2.47 4.98 -26.73 -0.13 -2.61 16 11 C 0.05 1.18 2.10 -91.77 -0.19 0.98 16 12 C -0.51 -13.92 8.56 -34.44 -0.29 -14.22 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.04 11.32 55.43 0.63 -24.42 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C -0.11 -2.21 5.14 -26.75 -0.14 -2.34 16 21 C -0.11 -1.81 4.78 -26.75 -0.13 -1.94 16 22 H 0.06 0.48 6.78 -51.93 -0.35 0.12 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.67 6.50 -51.93 -0.34 0.33 16 26 H 0.08 0.93 5.98 -51.93 -0.31 0.62 16 27 H 0.02 0.30 7.03 -51.93 -0.37 -0.07 16 28 H 0.04 0.66 7.24 -51.93 -0.38 0.29 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.68 6.31 -51.93 -0.33 0.35 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 1.01 8.14 -51.94 -0.42 0.58 16 37 H 0.05 0.70 6.24 -51.93 -0.32 0.38 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 294.35 15.07 4.44 4.44 Total: -1.00 -29.10 294.35 -7.01 -36.11 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.95 Total: -2.53 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.83 Total: -15.61 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.35 Total: -38.63 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.10 -7.01 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.678 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds