Wall clock time and date at job start Sun Mar 29 2020 22:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46814 * 2 1 4 4 C 1.47201 * 109.46921 * 119.99743 * 2 1 3 5 5 N 2.60798 * 109.47158 * 119.99730 * 2 1 3 6 6 N 1.46893 * 109.47339 * 240.00065 * 2 1 3 7 7 C 1.46905 * 111.00094 * 297.62099 * 6 2 1 8 8 C 1.46897 * 110.99997 * 173.67072 * 6 2 1 9 9 C 1.52994 * 109.47145 * 297.98915 * 8 6 2 10 10 C 1.53004 * 109.47393 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47182 * 60.00041 * 10 9 8 12 12 C 1.50702 * 109.47191 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00410 * 119.99979 * 12 11 10 14 14 C 1.37880 * 119.99583 * 299.99455 * 12 11 10 15 15 N 1.31522 * 120.00128 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99894 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47344 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46892 * 120.00208 * 16 14 12 19 19 H 1.48494 * 109.47820 * 240.00505 * 16 14 12 20 20 C 1.53003 * 109.47139 * 300.00219 * 11 10 9 21 21 C 1.53002 * 109.47070 * 177.99177 * 8 6 2 22 22 H 1.08994 * 109.46822 * 186.18907 * 1 2 3 23 23 H 1.09002 * 109.46769 * 66.19155 * 1 2 3 24 24 H 1.08995 * 109.46981 * 306.19064 * 1 2 3 25 25 H 1.09006 * 109.46628 * 60.00080 * 7 6 2 26 26 H 1.08996 * 109.47441 * 180.02562 * 7 6 2 27 27 H 1.09003 * 109.47045 * 300.00578 * 7 6 2 28 28 H 1.09001 * 109.47441 * 57.99325 * 8 6 2 29 29 H 1.09002 * 109.47565 * 300.00034 * 9 8 6 30 30 H 1.08997 * 109.47428 * 60.00056 * 9 8 6 31 31 H 1.09001 * 109.47058 * 299.99785 * 10 9 8 32 32 H 1.08999 * 109.47523 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.47334 * 59.99912 * 11 10 9 34 34 H 0.96998 * 119.99401 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.47037 * 300.00516 * 20 11 10 36 36 H 1.08988 * 109.47344 * 180.02562 * 20 11 10 37 37 H 1.09002 * 109.47552 * 299.99689 * 21 8 6 38 38 H 1.09001 * 109.47334 * 59.99540 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3994 -1.2293 2.1295 6 7 2.0197 -0.6924 -1.1994 7 6 1.5958 -2.0990 -1.2052 8 6 3.4803 -0.5825 -1.3113 9 6 3.8716 0.8899 -1.4514 10 6 5.3929 1.0045 -1.5686 11 6 5.8693 0.2309 -2.7996 12 6 7.3677 0.3432 -2.9147 13 1 7.9794 -0.5465 -2.8905 14 6 7.9576 1.5819 -3.0509 15 7 7.2128 2.6655 -3.0800 16 14 9.8150 1.7213 -3.1929 17 1 10.4192 0.3660 -3.1328 18 1 10.1659 2.3623 -4.4857 19 1 10.3366 2.5462 -2.0737 20 6 5.4780 -1.2416 -2.6595 21 6 3.9572 -1.3562 -2.5421 22 1 -0.3633 -1.0216 0.1108 23 1 -0.3633 0.4149 -0.9402 24 1 -0.3633 0.6068 0.8293 25 1 0.5070 -2.1503 -1.1921 26 1 1.9721 -2.5882 -2.1036 27 1 1.9939 -2.6021 -0.3240 28 1 3.9456 -0.9987 -0.4177 29 1 3.4065 1.3062 -2.3450 30 1 3.5319 1.4412 -0.5746 31 1 5.8585 0.5883 -0.6752 32 1 5.6717 2.0535 -1.6679 33 1 5.4037 0.6471 -3.6930 34 1 7.6279 3.5369 -3.1754 35 1 5.9435 -1.6579 -1.7661 36 1 5.8177 -1.7928 -3.5362 37 1 3.6785 -2.4053 -2.4423 38 1 3.4919 -0.9401 -3.4356 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:43 Heat of formation + Delta-G solvation = -2.100951 kcal Electronic energy + Delta-G solvation = -17273.091964 eV Core-core repulsion = 14728.235654 eV Total energy + Delta-G solvation = -2544.856311 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69084 -38.28197 -36.57634 -34.54549 -32.31260 -31.64779 -29.91306 -27.51307 -26.03319 -23.97423 -23.03625 -21.93142 -20.48207 -18.44222 -18.24433 -17.38735 -16.67488 -16.13768 -15.46279 -15.02976 -14.83055 -14.70999 -14.41515 -14.18958 -13.93717 -13.73326 -13.41262 -13.16551 -12.95047 -12.77016 -12.75838 -12.60827 -12.29727 -12.18066 -11.99147 -11.83227 -11.71317 -11.61047 -11.17341 -10.70564 -10.42839 -10.33778 -9.61806 -8.05731 -6.18596 1.39181 1.41790 1.52126 1.59509 1.69807 2.44457 2.76595 3.03106 3.20731 3.87719 3.96161 4.09396 4.27499 4.39370 4.48770 4.53932 4.60853 4.73812 4.82201 4.82721 4.90287 4.94541 4.99469 5.06332 5.14154 5.21038 5.32455 5.40366 5.43554 5.51664 5.63630 5.72308 5.98247 5.98706 6.08138 6.24559 6.45269 6.45497 6.93739 7.48890 8.98162 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040336 B = 0.005872 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.997930 B = 4767.344550 C = 4907.647309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.163 3.837 3 H 0.136 0.864 4 C 0.201 3.799 5 N -0.486 5.486 6 N -0.506 5.506 7 C 0.009 3.991 8 C 0.092 3.908 9 C -0.099 4.099 10 C -0.101 4.101 11 C 0.045 3.955 12 C -0.536 4.536 13 H 0.045 0.955 14 C 0.015 3.985 15 N -0.913 5.913 16 Si 0.947 3.053 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.282 1.282 20 C -0.103 4.103 21 C -0.100 4.100 22 H 0.066 0.934 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.009 0.991 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.002 0.998 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 -4.629 2.440 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.051 3.949 3 H 0.153 0.847 4 C -0.119 4.119 5 N -0.164 5.164 6 N -0.229 5.229 7 C -0.139 4.139 8 C -0.016 4.016 9 C -0.137 4.137 10 C -0.140 4.140 11 C 0.027 3.973 12 C -0.574 4.574 13 H 0.064 0.936 14 C -0.184 4.184 15 N -0.553 5.553 16 Si 0.773 3.227 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.208 1.208 20 C -0.141 4.141 21 C -0.138 4.138 22 H 0.085 0.915 23 H 0.120 0.880 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.334 -5.029 3.381 15.563 hybrid contribution 1.847 0.049 0.435 1.898 sum -12.487 -4.980 3.816 13.975 Atomic orbital electron populations 1.21856 0.88216 1.03728 1.05282 1.20254 0.98950 0.98170 0.77546 0.84672 1.31328 0.92178 0.93191 0.95178 1.81153 1.10536 1.11267 1.13459 1.62541 1.11320 1.15348 1.33666 1.22709 1.02991 0.87124 1.01045 1.21603 0.86240 0.96860 0.96918 1.21570 0.96126 0.94442 1.01585 1.21397 0.93304 1.02229 0.97061 1.18636 0.93673 0.91371 0.93624 1.21665 0.93904 0.92307 1.49512 0.93636 1.25669 1.01856 0.95794 0.95086 1.70002 1.36059 0.98067 1.51150 0.85678 0.81357 0.77983 0.77666 1.19596 1.20419 1.20799 1.21493 0.95054 0.97964 0.99590 1.21574 0.95120 0.99513 0.97570 0.91549 0.88030 0.89903 0.88028 0.89583 0.97235 0.96443 0.91373 0.92049 0.96783 0.91888 0.97977 0.93083 0.94638 0.93146 0.90887 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.80 71.98 0.63 -1.00 16 2 C 0.16 3.25 2.62 43.11 0.11 3.36 16 3 H 0.14 2.58 6.05 -2.39 -0.01 2.56 16 4 C 0.20 5.32 12.05 89.44 1.08 6.40 16 5 N -0.49 -15.83 18.54 20.01 0.37 -15.46 16 6 N -0.51 -11.71 4.61 -882.47 -4.07 -15.78 16 7 C 0.01 0.17 8.51 127.69 1.09 1.26 16 8 C 0.09 2.85 1.75 44.91 0.08 2.92 16 9 C -0.10 -3.51 5.04 30.59 0.15 -3.36 16 10 C -0.10 -4.72 4.98 30.60 0.15 -4.57 16 11 C 0.05 2.24 2.10 -11.54 -0.02 2.22 16 12 C -0.54 -29.87 8.56 25.60 0.22 -29.65 16 13 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 14 C 0.01 0.81 5.30 84.65 0.45 1.26 16 15 N -0.91 -52.42 11.32 21.45 0.24 -52.17 16 16 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 C -0.10 -4.19 5.14 30.58 0.16 -4.04 16 21 C -0.10 -3.20 4.78 30.58 0.15 -3.06 16 22 H 0.07 0.77 6.78 -2.39 -0.02 0.75 16 23 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.10 1.45 6.50 -2.38 -0.02 1.43 16 26 H 0.09 1.65 5.98 -2.39 -0.01 1.63 16 27 H 0.01 0.21 7.03 -2.39 -0.02 0.20 16 28 H 0.02 0.62 7.24 -2.39 -0.02 0.60 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 30 H 0.06 1.91 6.31 -2.39 -0.02 1.90 16 31 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 33 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.98 6.24 -2.39 -0.01 1.97 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -64.29 294.35 3.85 -60.43 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.03 Total: 5.11 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 4.24 Total: -28.24 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -3.45 Total: -83.41 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -64.29 3.85 -60.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.334 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds