Wall clock time and date at job start Sun Mar 29 2020 22:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.47194 * 109.47253 * 239.99939 * 2 1 3 5 5 N 2.60806 * 109.47261 * 239.99802 * 2 1 3 6 6 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 7 7 C 1.46901 * 110.99997 * 176.05050 * 6 2 1 8 8 C 1.46906 * 110.99793 * 299.99861 * 6 2 1 9 9 C 1.53004 * 109.47181 * 295.00232 * 8 6 2 10 10 C 1.52999 * 109.47045 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46917 * 60.00093 * 10 9 8 12 12 C 1.50705 * 109.47209 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00444 * 119.99541 * 12 11 10 14 14 C 1.37882 * 119.99438 * 299.99920 * 12 11 10 15 15 N 1.31517 * 119.99804 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00223 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47100 * 89.99882 * 16 14 12 18 18 H 1.48496 * 109.47310 * 210.00183 * 16 14 12 19 19 H 1.48504 * 109.47293 * 330.00187 * 16 14 12 20 20 C 1.53004 * 109.47187 * 299.99820 * 11 10 9 21 21 C 1.52999 * 109.47045 * 60.00258 * 20 11 10 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.08992 * 109.47449 * 59.99368 * 7 6 2 26 26 H 1.09003 * 109.46802 * 180.02562 * 7 6 2 27 27 H 1.09006 * 109.46956 * 299.99537 * 7 6 2 28 28 H 1.08997 * 109.47037 * 54.99984 * 8 6 2 29 29 H 1.08997 * 109.46933 * 299.99816 * 9 8 6 30 30 H 1.09000 * 109.47040 * 59.99526 * 9 8 6 31 31 H 1.09000 * 109.46937 * 300.00226 * 10 9 8 32 32 H 1.08994 * 109.46905 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.47484 * 59.99850 * 11 10 9 34 34 H 0.96998 * 119.99995 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.46910 * 299.99810 * 20 11 10 36 36 H 1.09004 * 109.46927 * 180.02562 * 20 11 10 37 37 H 1.09004 * 109.46897 * 180.02562 * 21 20 11 38 38 H 1.08997 * 109.47167 * 60.00252 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 7 2.0196 -0.6925 1.1994 7 6 3.4850 -0.7945 1.1871 8 6 1.5486 -0.0264 2.4211 9 6 2.1598 1.3737 2.5067 10 6 1.6687 2.0677 3.7787 11 6 2.0919 1.2508 5.0011 12 6 1.6076 1.9341 6.2541 13 1 0.9319 1.4210 6.9222 14 6 2.0274 3.2143 6.5473 15 7 1.6052 3.8104 7.6409 16 14 3.1967 4.1015 5.3920 17 1 2.4148 4.8562 4.3798 18 1 4.0404 5.0442 6.1695 19 1 4.0645 3.1093 4.7080 20 6 1.4807 -0.1492 4.9156 21 6 1.9718 -0.8432 3.6436 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.9186 0.2051 1.1592 26 1 3.8208 -1.3117 2.0860 27 1 3.8030 -1.3532 0.3068 28 1 0.4618 0.0526 2.3958 29 1 3.2466 1.2947 2.5319 30 1 1.8580 1.9557 1.6359 31 1 0.5818 2.1466 3.7529 32 1 2.1045 3.0648 3.8398 33 1 3.1787 1.1718 5.0269 34 1 1.9002 4.7112 7.8470 35 1 0.3939 -0.0702 4.8900 36 1 1.7819 -0.7310 5.7868 37 1 1.5360 -1.8405 3.5824 38 1 3.0586 -0.9223 3.6693 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:45 Heat of formation + Delta-G solvation = 25.244091 kcal Electronic energy + Delta-G solvation = -17395.015519 eV Core-core repulsion = 14851.344978 eV Total energy + Delta-G solvation = -2543.670541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76661 -37.10375 -35.46348 -32.60710 -31.43325 -30.19808 -29.37377 -25.75179 -24.86692 -23.12772 -22.22843 -20.08857 -18.82667 -17.60557 -16.66641 -16.36721 -15.42185 -14.92328 -14.23310 -14.05220 -13.67005 -13.24675 -13.07024 -13.00403 -12.83799 -12.64128 -12.40697 -12.00282 -11.83382 -11.76036 -11.69439 -11.44656 -11.27564 -10.91966 -10.54519 -10.32674 -10.09948 -9.85656 -9.55530 -9.18508 -8.93633 -8.55991 -8.27551 -6.08204 -4.06813 2.50435 2.63779 3.23523 3.34834 3.37312 3.67546 3.97832 4.39128 4.82252 4.90244 4.99532 5.15630 5.21657 5.33466 5.44783 5.49691 5.53824 5.67292 5.80781 5.85103 5.90612 5.97933 6.10772 6.13704 6.17595 6.29428 6.48036 6.54862 6.69722 6.85978 6.86555 6.97180 7.02927 7.28005 7.41353 7.55097 7.77916 8.52608 8.97045 9.54920 11.05344 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038743 B = 0.006524 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.539119 B = 4290.526551 C = 4490.206618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.169 3.831 3 H 0.088 0.912 4 C 0.223 3.777 5 N -0.436 5.436 6 N -0.527 5.527 7 C 0.011 3.989 8 C 0.087 3.913 9 C -0.157 4.157 10 C -0.114 4.114 11 C 0.013 3.987 12 C -0.512 4.512 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.299 1.299 19 H -0.266 1.266 20 C -0.097 4.097 21 C -0.110 4.110 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -6.093 -12.666 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.058 3.942 3 H 0.105 0.895 4 C -0.095 4.095 5 N -0.113 5.113 6 N -0.252 5.252 7 C -0.137 4.137 8 C -0.020 4.020 9 C -0.196 4.196 10 C -0.153 4.153 11 C -0.005 4.005 12 C -0.550 4.550 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.541 5.541 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.227 1.227 19 H -0.191 1.191 20 C -0.136 4.136 21 C -0.148 4.148 22 H 0.091 0.909 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.072 -7.228 -13.965 15.725 hybrid contribution 0.906 1.765 -0.208 1.995 sum 0.979 -5.463 -14.173 15.221 Atomic orbital electron populations 1.21890 0.91077 1.03958 1.03462 1.19190 0.96940 0.95005 0.83086 0.89463 1.29044 0.92910 0.93337 0.94232 1.81186 1.09003 1.09024 1.12087 1.62453 1.10931 1.50998 1.00812 1.22553 0.87271 1.00860 1.03037 1.21901 1.00347 0.91956 0.87844 1.22316 1.01035 0.96778 0.99429 1.21905 1.00834 0.98482 0.94031 1.19159 0.96092 0.91889 0.93402 1.21101 1.28902 0.99544 1.05460 0.90881 1.25038 0.95798 0.97449 0.95012 1.69903 1.45005 1.14073 1.25156 0.86848 0.81400 0.79544 0.80402 1.20741 1.22698 1.19142 1.21431 1.00198 0.97092 0.94834 1.21672 1.00808 0.98332 0.93946 0.90855 0.89850 0.91446 0.94506 0.89872 0.92194 0.88922 0.92105 0.93050 0.92022 0.93657 0.95771 0.92741 0.92576 0.92433 0.92047 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.92 37.16 0.33 -0.92 16 2 C 0.17 1.74 2.25 -70.50 -0.16 1.58 16 3 H 0.09 0.84 6.44 -51.93 -0.33 0.50 16 4 C 0.22 2.69 13.24 -20.76 -0.27 2.42 16 5 N -0.44 -6.21 18.54 42.16 0.78 -5.43 16 6 N -0.53 -6.17 4.60 -230.28 -1.06 -7.23 16 7 C 0.01 0.12 8.44 60.07 0.51 0.63 16 8 C 0.09 1.13 1.97 -67.71 -0.13 1.00 16 9 C -0.16 -2.34 4.51 -26.73 -0.12 -2.46 16 10 C -0.11 -2.21 4.69 -26.73 -0.13 -2.34 16 11 C 0.01 0.29 1.69 -91.77 -0.16 0.13 16 12 C -0.51 -13.74 9.14 -34.44 -0.31 -14.06 16 13 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 14 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 15 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 16 Si 0.89 21.36 24.37 -169.99 -4.14 17.22 16 17 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 18 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.27 -6.10 6.53 56.52 0.37 -5.73 16 20 C -0.10 -1.74 5.14 -26.73 -0.14 -1.88 16 21 C -0.11 -1.57 5.01 -26.73 -0.13 -1.71 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.71 6.30 -51.93 -0.33 0.38 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.42 6.51 -51.93 -0.34 0.09 16 26 H 0.08 0.95 6.13 -51.93 -0.32 0.63 16 27 H 0.06 0.69 6.99 -51.93 -0.36 0.33 16 28 H 0.09 1.16 6.05 -51.93 -0.31 0.84 16 29 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 30 H 0.05 0.67 6.52 -51.93 -0.34 0.33 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.96 3.27 -51.93 -0.17 0.79 16 33 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.84 6.34 -51.93 -0.33 0.51 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -29.66 285.78 -5.83 -35.49 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.68 Total: -2.21 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.81 Total: -15.79 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.50 Total: -39.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.14 Total: 17.22 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.66 -5.83 -35.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.732 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds