Wall clock time and date at job start Sun Mar 29 2020 22:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.47194 * 109.47253 * 239.99939 * 2 1 3 5 5 N 2.60806 * 109.47261 * 239.99802 * 2 1 3 6 6 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 7 7 C 1.46901 * 110.99997 * 176.05050 * 6 2 1 8 8 C 1.46906 * 110.99793 * 299.99861 * 6 2 1 9 9 C 1.53004 * 109.47181 * 295.00232 * 8 6 2 10 10 C 1.52999 * 109.47045 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46917 * 60.00093 * 10 9 8 12 12 C 1.50705 * 109.47209 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00444 * 119.99541 * 12 11 10 14 14 C 1.37882 * 119.99438 * 299.99920 * 12 11 10 15 15 N 1.31517 * 119.99804 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00223 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47100 * 89.99882 * 16 14 12 18 18 H 1.48496 * 109.47310 * 210.00183 * 16 14 12 19 19 H 1.48504 * 109.47293 * 330.00187 * 16 14 12 20 20 C 1.53004 * 109.47187 * 299.99820 * 11 10 9 21 21 C 1.52999 * 109.47045 * 60.00258 * 20 11 10 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.08992 * 109.47449 * 59.99368 * 7 6 2 26 26 H 1.09003 * 109.46802 * 180.02562 * 7 6 2 27 27 H 1.09006 * 109.46956 * 299.99537 * 7 6 2 28 28 H 1.08997 * 109.47037 * 54.99984 * 8 6 2 29 29 H 1.08997 * 109.46933 * 299.99816 * 9 8 6 30 30 H 1.09000 * 109.47040 * 59.99526 * 9 8 6 31 31 H 1.09000 * 109.46937 * 300.00226 * 10 9 8 32 32 H 1.08994 * 109.46905 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.47484 * 59.99850 * 11 10 9 34 34 H 0.96998 * 119.99995 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.46910 * 299.99810 * 20 11 10 36 36 H 1.09004 * 109.46927 * 180.02562 * 20 11 10 37 37 H 1.09004 * 109.46897 * 180.02562 * 21 20 11 38 38 H 1.08997 * 109.47167 * 60.00252 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 7 2.0196 -0.6925 1.1994 7 6 3.4850 -0.7945 1.1871 8 6 1.5486 -0.0264 2.4211 9 6 2.1598 1.3737 2.5067 10 6 1.6687 2.0677 3.7787 11 6 2.0919 1.2508 5.0011 12 6 1.6076 1.9341 6.2541 13 1 0.9319 1.4210 6.9222 14 6 2.0274 3.2143 6.5473 15 7 1.6052 3.8104 7.6409 16 14 3.1967 4.1015 5.3920 17 1 2.4148 4.8562 4.3798 18 1 4.0404 5.0442 6.1695 19 1 4.0645 3.1093 4.7080 20 6 1.4807 -0.1492 4.9156 21 6 1.9718 -0.8432 3.6436 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 3.9186 0.2051 1.1592 26 1 3.8208 -1.3117 2.0860 27 1 3.8030 -1.3532 0.3068 28 1 0.4618 0.0526 2.3958 29 1 3.2466 1.2947 2.5319 30 1 1.8580 1.9557 1.6359 31 1 0.5818 2.1466 3.7529 32 1 2.1045 3.0648 3.8398 33 1 3.1787 1.1718 5.0269 34 1 1.9002 4.7112 7.8470 35 1 0.3939 -0.0702 4.8900 36 1 1.7819 -0.7310 5.7868 37 1 1.5360 -1.8405 3.5824 38 1 3.0586 -0.9223 3.6693 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:44 Heat of formation + Delta-G solvation = 5.560179 kcal Electronic energy + Delta-G solvation = -17395.869077 eV Core-core repulsion = 14851.344978 eV Total energy + Delta-G solvation = -2544.524099 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83302 -38.27723 -36.66223 -34.45053 -32.51677 -31.50712 -30.73797 -27.08758 -25.85080 -24.47944 -23.57057 -21.54539 -20.09333 -18.70061 -18.48041 -17.37558 -16.84148 -16.05958 -15.51146 -15.08604 -15.00530 -14.90172 -14.48953 -14.09354 -14.07124 -13.81867 -13.41561 -13.16310 -13.14681 -12.97097 -12.76880 -12.49834 -12.40742 -12.31124 -11.95821 -11.80408 -11.60057 -11.51583 -11.01204 -10.84996 -10.73249 -10.51684 -9.26315 -8.24610 -6.27064 1.32300 1.38820 1.48934 1.57678 1.73253 2.36562 2.77495 3.09495 3.12208 3.90230 3.97205 4.07022 4.15377 4.34518 4.39010 4.52243 4.58210 4.64746 4.73258 4.80721 4.82397 4.88931 4.89973 4.99923 5.06270 5.14923 5.23060 5.34108 5.43183 5.46076 5.48721 5.69116 5.77163 5.90712 6.01342 6.02154 6.40567 6.51198 6.82227 7.38635 8.92651 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038743 B = 0.006524 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.539119 B = 4290.526551 C = 4490.206618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.169 3.831 3 H 0.105 0.895 4 C 0.244 3.756 5 N -0.478 5.478 6 N -0.527 5.527 7 C 0.010 3.990 8 C 0.096 3.904 9 C -0.150 4.150 10 C -0.113 4.113 11 C 0.011 3.989 12 C -0.515 4.515 13 H 0.031 0.969 14 C 0.008 3.992 15 N -0.956 5.956 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.307 1.307 19 H -0.246 1.246 20 C -0.093 4.093 21 C -0.101 4.101 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -6.379 -15.293 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.058 3.942 3 H 0.122 0.878 4 C -0.074 4.074 5 N -0.155 5.155 6 N -0.252 5.252 7 C -0.138 4.138 8 C -0.012 4.012 9 C -0.189 4.189 10 C -0.151 4.151 11 C -0.008 4.008 12 C -0.553 4.553 13 H 0.049 0.951 14 C -0.188 4.188 15 N -0.597 5.597 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.236 1.236 19 H -0.169 1.169 20 C -0.131 4.131 21 C -0.139 4.139 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.423 -7.543 -16.619 18.255 hybrid contribution 0.736 1.790 0.710 2.061 sum 1.159 -5.753 -15.909 16.957 Atomic orbital electron populations 1.21922 0.89573 1.04214 1.04543 1.19406 0.98017 0.95212 0.81566 0.87784 1.29317 0.91726 0.92341 0.93969 1.81218 1.10453 1.10375 1.13499 1.62401 1.11095 1.50973 1.00697 1.22571 0.87148 1.01078 1.03033 1.21758 1.00951 0.90618 0.87863 1.22267 1.01055 0.97706 0.97891 1.21753 1.00849 0.97458 0.95028 1.19147 0.95572 0.93910 0.92126 1.21520 1.27414 0.99478 1.06901 0.95084 1.25911 0.97785 0.98540 0.96605 1.70071 1.47315 1.14649 1.27646 0.85813 0.79370 0.78507 0.78462 1.19111 1.23585 1.16938 1.21320 0.99897 0.95184 0.96692 1.21556 1.00983 0.98860 0.92505 0.91085 0.89292 0.89873 0.94124 0.89865 0.92318 0.87711 0.92111 0.90215 0.92051 0.95341 0.96492 0.92844 0.92774 0.93666 0.90391 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.92 71.98 0.64 -1.25 16 2 C 0.17 2.78 2.25 43.11 0.10 2.88 16 3 H 0.10 1.45 6.44 -2.39 -0.02 1.44 16 4 C 0.24 5.16 13.24 89.44 1.18 6.34 16 5 N -0.48 -12.63 18.54 20.01 0.37 -12.26 16 6 N -0.53 -10.27 4.60 -882.46 -4.06 -14.33 16 7 C 0.01 0.19 8.44 127.69 1.08 1.27 16 8 C 0.10 2.13 1.97 44.92 0.09 2.22 16 9 C -0.15 -3.86 4.51 30.60 0.14 -3.73 16 10 C -0.11 -4.08 4.69 30.59 0.14 -3.94 16 11 C 0.01 0.48 1.69 -11.54 -0.02 0.46 16 12 C -0.51 -28.31 9.14 25.60 0.23 -28.07 16 13 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 14 C 0.01 0.44 5.45 84.66 0.46 0.90 16 15 N -0.96 -59.37 13.96 21.45 0.30 -59.07 16 16 Si 0.95 43.91 24.37 68.60 1.67 45.58 16 17 H -0.27 -11.51 6.87 99.48 0.68 -10.82 16 18 H -0.31 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.25 -10.38 6.53 99.48 0.65 -9.73 16 20 C -0.09 -3.21 5.14 30.60 0.16 -3.06 16 21 C -0.10 -2.61 5.01 30.59 0.15 -2.46 16 22 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.09 1.11 6.30 -2.39 -0.02 1.09 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.04 0.77 6.51 -2.39 -0.02 0.76 16 26 H 0.08 1.64 6.13 -2.39 -0.01 1.62 16 27 H 0.06 1.18 6.99 -2.38 -0.02 1.16 16 28 H 0.11 2.16 6.05 -2.39 -0.01 2.14 16 29 H 0.06 1.60 6.47 -2.39 -0.02 1.59 16 30 H 0.08 1.64 6.52 -2.39 -0.02 1.63 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.03 1.13 3.27 -2.39 -0.01 1.12 16 33 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 34 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.57 6.34 -2.39 -0.02 1.55 16 Total: -1.00 -65.92 285.78 3.60 -62.31 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.97 Total: 6.21 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 4.36 Total: -28.44 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -3.39 Total: -85.66 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.67 Total: 45.58 kcal Total: -65.92 3.60 -62.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.873 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds