Wall clock time and date at job start Sun Mar 29 2020 21:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.47202 * 109.47138 * 2 1 4 4 N 2.60798 * 109.47187 * 359.97438 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99482 * 2 1 3 6 6 C 1.52997 * 109.47232 * 300.00122 * 5 2 1 7 7 C 1.52999 * 109.47592 * 300.00195 * 6 5 2 8 8 N 1.46899 * 109.47571 * 180.02562 * 7 6 5 9 9 C 1.46897 * 110.99679 * 84.99655 * 8 7 6 10 10 C 1.53002 * 109.46546 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99594 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00060 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00288 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99905 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47087 * 60.00207 * 15 13 11 17 17 H 1.48498 * 109.46992 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47029 * 300.00283 * 15 13 11 19 19 C 1.53006 * 109.46885 * 59.99462 * 7 6 5 20 20 C 1.52997 * 109.47445 * 300.00628 * 19 7 6 21 21 H 1.09001 * 109.47002 * 60.00092 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00358 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 5 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 26 26 H 1.09000 * 109.47140 * 179.97438 * 6 5 2 27 27 H 1.09002 * 109.47045 * 59.99942 * 6 5 2 28 28 H 1.09002 * 109.46724 * 300.00504 * 7 6 5 29 29 H 1.00899 * 110.99679 * 208.95217 * 8 7 6 30 30 H 1.08998 * 109.47446 * 299.99823 * 9 8 7 31 31 H 1.09000 * 109.47060 * 60.00537 * 9 8 7 32 32 H 1.08996 * 109.47555 * 299.99818 * 10 9 8 33 33 H 1.09000 * 109.47032 * 60.00484 * 10 9 8 34 34 H 0.96997 * 120.00004 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.46726 * 180.02562 * 19 7 6 36 36 H 1.09002 * 109.46589 * 60.00959 * 19 7 6 37 37 H 1.09002 * 109.47045 * 300.00058 * 20 19 7 38 38 H 1.09000 * 109.47140 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4588 -0.0011 5 6 2.0401 -0.7213 -1.2492 6 6 1.5301 -2.1638 -1.2491 7 6 2.0399 -2.8851 0.0002 8 7 1.5508 -4.2702 0.0000 9 6 2.4349 -5.1406 -0.7865 10 6 1.8937 -6.5715 -0.7639 11 6 2.8011 -7.4646 -1.5702 12 1 3.6764 -7.0528 -2.0504 13 6 2.5143 -8.8075 -1.6940 14 7 1.4486 -9.3090 -1.1088 15 14 3.6386 -9.9143 -2.6941 16 1 5.0035 -9.8914 -2.1096 17 1 3.1134 -11.3032 -2.6720 18 1 3.6924 -9.4282 -4.0963 19 6 1.5299 -2.1636 1.2494 20 6 2.0399 -0.7212 1.2493 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6767 -0.2075 -2.1392 25 1 3.1301 -0.7217 -1.2489 26 1 1.8930 -2.6776 -2.1392 27 1 0.4400 -2.1638 -1.2491 28 1 3.1299 -2.8850 0.0003 29 1 1.4464 -4.6169 0.9418 30 1 2.4744 -4.7837 -1.8157 31 1 3.4368 -5.1238 -0.3574 32 1 1.8538 -6.9287 0.2651 33 1 0.8920 -6.5878 -1.1933 34 1 1.2471 -10.2538 -1.1956 35 1 1.8936 -2.6772 2.1394 36 1 0.4399 -2.1637 1.2494 37 1 3.1300 -0.7212 1.2493 38 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173588149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:37 Heat of formation + Delta-G solvation = -4.443556 kcal Electronic energy + Delta-G solvation = -16483.445727 eV Core-core repulsion = 13938.487833 eV Total energy + Delta-G solvation = -2544.957894 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96947 -36.74687 -35.21943 -33.06323 -31.17329 -30.94841 -28.51231 -26.64893 -24.19410 -22.97216 -22.09307 -20.44333 -19.35149 -17.63188 -16.34551 -15.36840 -15.09018 -15.03385 -14.47911 -14.33776 -13.91323 -13.53623 -13.35152 -12.85653 -12.71275 -12.53907 -12.33738 -12.21179 -12.05801 -11.67226 -11.33506 -11.15410 -11.08569 -10.98955 -10.92469 -10.57115 -10.40119 -10.11444 -9.89604 -9.34619 -9.15046 -8.35405 -7.83200 -6.00069 -4.02700 2.57474 2.58950 3.33140 3.37710 3.39905 3.62734 4.40119 4.42311 4.47689 4.58063 4.83714 5.00877 5.08737 5.20215 5.35016 5.35893 5.36815 5.50440 5.57171 5.65721 5.73462 5.79196 5.87019 5.89590 6.07392 6.12835 6.29133 6.34241 6.38505 6.53162 6.99363 7.36716 7.49469 7.72888 7.82690 7.96383 8.08565 8.43428 9.04589 9.61185 11.11278 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.056758 B = 0.004030 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.203913 B = 6946.409623 C = 7121.473373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.037 3.963 3 C 0.220 3.780 4 N -0.445 5.445 5 C -0.106 4.106 6 C -0.107 4.107 7 C 0.083 3.917 8 N -0.688 5.688 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.523 4.523 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.121 4.121 20 C -0.103 4.103 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.337 0.663 30 H 0.058 0.942 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 15.850 3.728 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 C -0.098 4.098 4 N -0.119 5.119 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.027 4.027 8 N -0.319 5.319 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.159 4.159 20 C -0.142 4.142 21 H 0.082 0.918 22 H 0.108 0.892 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.155 0.845 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.530 17.413 3.229 17.776 hybrid contribution 1.318 -1.139 0.033 1.743 sum -0.212 16.274 3.262 16.599 Atomic orbital electron populations 1.22015 0.91322 1.04469 1.02619 1.18370 0.97065 0.82481 0.98789 1.29319 0.92961 0.94761 0.92775 1.81193 1.09313 1.12600 1.08832 1.21635 1.01313 0.96462 0.95150 1.21565 1.01955 0.92362 0.98613 1.21528 0.97005 0.89882 0.94281 1.60597 1.51957 1.00731 1.18597 1.22192 0.92438 0.95251 0.96308 1.19062 0.96975 0.88104 0.97070 1.21149 1.09812 0.93349 1.31839 0.92856 1.24994 0.95309 0.98197 0.95812 1.69958 1.26008 1.13452 1.43852 0.86662 0.80932 0.79662 0.80754 1.20308 1.21282 1.20218 1.21768 1.02251 0.93815 0.98023 1.21566 1.01357 0.95921 0.95380 0.91831 0.89155 0.91960 0.90977 0.91231 0.91044 0.90449 0.94225 0.84504 0.92342 0.96749 0.96873 0.95651 0.92936 0.91368 0.90186 0.91122 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.74 37.16 0.29 -0.77 16 2 C 0.04 0.31 0.69 -157.29 -0.11 0.20 16 3 C 0.22 2.36 13.86 -20.76 -0.29 2.07 16 4 N -0.44 -5.94 18.54 42.15 0.78 -5.15 16 5 C -0.11 -0.96 4.69 -26.73 -0.13 -1.08 16 6 C -0.11 -1.17 5.15 -26.73 -0.14 -1.31 16 7 C 0.08 1.01 2.49 -67.71 -0.17 0.84 16 8 N -0.69 -10.93 6.31 -106.72 -0.67 -11.60 16 9 C 0.07 1.32 5.42 -3.82 -0.02 1.30 16 10 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16 11 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 15 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.12 -1.12 4.92 -26.73 -0.13 -1.25 16 20 C -0.10 -0.84 4.69 -26.73 -0.13 -0.96 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.09 0.66 4.81 -51.93 -0.25 0.41 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.90 7.45 -51.93 -0.39 0.51 16 27 H 0.08 0.83 6.43 -51.93 -0.33 0.49 16 28 H 0.04 0.52 7.80 -51.93 -0.40 0.11 16 29 H 0.34 5.18 8.35 -39.29 -0.33 4.85 16 30 H 0.06 1.17 7.44 -51.93 -0.39 0.78 16 31 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.08 0.71 6.43 -51.93 -0.33 0.37 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -30.52 304.50 -7.15 -37.67 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.19 Total: -2.21 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.38 Total: -13.82 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.84 Total: -42.63 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.52 -7.15 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173588149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.224 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds