Wall clock time and date at job start Sun Mar 29 2020 21:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.47202 * 109.47138 * 2 1 4 4 N 2.60798 * 109.47187 * 359.97438 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99482 * 2 1 3 6 6 C 1.52997 * 109.47232 * 300.00122 * 5 2 1 7 7 C 1.52999 * 109.47592 * 300.00195 * 6 5 2 8 8 N 1.46899 * 109.47571 * 180.02562 * 7 6 5 9 9 C 1.46897 * 110.99679 * 84.99655 * 8 7 6 10 10 C 1.53002 * 109.46546 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99594 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00060 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00288 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99905 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47087 * 60.00207 * 15 13 11 17 17 H 1.48498 * 109.46992 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47029 * 300.00283 * 15 13 11 19 19 C 1.53006 * 109.46885 * 59.99462 * 7 6 5 20 20 C 1.52997 * 109.47445 * 300.00628 * 19 7 6 21 21 H 1.09001 * 109.47002 * 60.00092 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00358 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 5 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 26 26 H 1.09000 * 109.47140 * 179.97438 * 6 5 2 27 27 H 1.09002 * 109.47045 * 59.99942 * 6 5 2 28 28 H 1.09002 * 109.46724 * 300.00504 * 7 6 5 29 29 H 1.00899 * 110.99679 * 208.95217 * 8 7 6 30 30 H 1.08998 * 109.47446 * 299.99823 * 9 8 7 31 31 H 1.09000 * 109.47060 * 60.00537 * 9 8 7 32 32 H 1.08996 * 109.47555 * 299.99818 * 10 9 8 33 33 H 1.09000 * 109.47032 * 60.00484 * 10 9 8 34 34 H 0.96997 * 120.00004 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.46726 * 180.02562 * 19 7 6 36 36 H 1.09002 * 109.46589 * 60.00959 * 19 7 6 37 37 H 1.09002 * 109.47045 * 300.00058 * 20 19 7 38 38 H 1.09000 * 109.47140 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4588 -0.0011 5 6 2.0401 -0.7213 -1.2492 6 6 1.5301 -2.1638 -1.2491 7 6 2.0399 -2.8851 0.0002 8 7 1.5508 -4.2702 0.0000 9 6 2.4349 -5.1406 -0.7865 10 6 1.8937 -6.5715 -0.7639 11 6 2.8011 -7.4646 -1.5702 12 1 3.6764 -7.0528 -2.0504 13 6 2.5143 -8.8075 -1.6940 14 7 1.4486 -9.3090 -1.1088 15 14 3.6386 -9.9143 -2.6941 16 1 5.0035 -9.8914 -2.1096 17 1 3.1134 -11.3032 -2.6720 18 1 3.6924 -9.4282 -4.0963 19 6 1.5299 -2.1636 1.2494 20 6 2.0399 -0.7212 1.2493 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6767 -0.2075 -2.1392 25 1 3.1301 -0.7217 -1.2489 26 1 1.8930 -2.6776 -2.1392 27 1 0.4400 -2.1638 -1.2491 28 1 3.1299 -2.8850 0.0003 29 1 1.4464 -4.6169 0.9418 30 1 2.4744 -4.7837 -1.8157 31 1 3.4368 -5.1238 -0.3574 32 1 1.8538 -6.9287 0.2651 33 1 0.8920 -6.5878 -1.1933 34 1 1.2471 -10.2538 -1.1956 35 1 1.8936 -2.6772 2.1394 36 1 0.4399 -2.1637 1.2494 37 1 3.1300 -0.7212 1.2493 38 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173588149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:36 Heat of formation + Delta-G solvation = -23.244811 kcal Electronic energy + Delta-G solvation = -16484.261010 eV Core-core repulsion = 13938.487833 eV Total energy + Delta-G solvation = -2545.773177 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78866 -37.83152 -36.47974 -34.93761 -32.52067 -31.79300 -29.96302 -27.54561 -25.92081 -23.82957 -23.20305 -22.11794 -20.24528 -18.47488 -18.36325 -16.74057 -16.34771 -15.84384 -15.79482 -15.66762 -14.85414 -14.73702 -14.35731 -14.32130 -13.95224 -13.53915 -13.38947 -13.16634 -13.00146 -12.96719 -12.81505 -12.52455 -12.34841 -12.19082 -11.92357 -11.86285 -11.79197 -11.34740 -11.21402 -11.03388 -10.87203 -10.52056 -9.16264 -8.17088 -6.28022 1.42582 1.45261 1.53144 1.72519 1.74783 2.43057 2.81922 3.16424 3.42606 3.68916 3.77714 4.08432 4.18642 4.27794 4.44164 4.49624 4.60122 4.62294 4.70120 4.84414 4.86036 4.95216 4.97899 5.11100 5.13114 5.16564 5.21775 5.30354 5.34964 5.47369 5.51102 5.64710 5.76230 5.85640 6.22087 6.39955 6.53697 6.69259 6.90190 7.41146 8.94639 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.056758 B = 0.004030 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.203913 B = 6946.409623 C = 7121.473373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 C 0.244 3.756 4 N -0.491 5.491 5 C -0.101 4.101 6 C -0.103 4.103 7 C 0.081 3.919 8 N -0.691 5.691 9 C 0.086 3.914 10 C 0.032 3.968 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.112 4.112 20 C -0.099 4.099 21 H 0.067 0.933 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.340 0.660 30 H 0.057 0.943 31 H 0.014 0.986 32 H -0.009 1.009 33 H -0.004 1.004 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 16.533 3.697 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.039 3.961 3 C -0.073 4.073 4 N -0.166 5.166 5 C -0.140 4.140 6 C -0.141 4.141 7 C -0.029 4.029 8 N -0.322 5.322 9 C -0.043 4.043 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.788 3.212 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.150 4.150 20 C -0.138 4.138 21 H 0.086 0.914 22 H 0.111 0.889 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.158 0.842 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.010 0.990 33 H 0.014 0.986 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.132 18.120 3.202 18.435 hybrid contribution 1.158 -1.351 0.061 1.780 sum 0.026 16.769 3.263 17.084 Atomic orbital electron populations 1.22038 0.90017 1.04861 1.03467 1.18450 0.97959 0.81067 0.98645 1.29616 0.91642 0.94734 0.91349 1.81224 1.10912 1.14117 1.10373 1.21568 1.01244 0.95202 0.95981 1.21504 1.02219 0.93196 0.97153 1.21665 0.96802 0.87895 0.96512 1.60512 1.51163 1.02039 1.18461 1.21771 0.92607 0.92865 0.97067 1.18921 0.95333 0.91333 0.95006 1.21619 1.10355 0.94253 1.32157 0.92321 1.25935 0.96848 0.99927 0.96922 1.70091 1.27824 1.13928 1.45261 0.85531 0.78982 0.77401 0.79308 1.19233 1.20883 1.19214 1.21696 1.02764 0.94097 0.96457 1.21547 1.01376 0.95039 0.95825 0.91393 0.88905 0.90893 0.90007 0.91360 0.92886 0.89942 0.94815 0.84172 0.92501 0.96795 0.99048 0.98597 0.92781 0.90877 0.89273 0.91190 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 7.74 71.98 0.56 -1.16 16 2 C 0.04 0.61 0.69 -53.99 -0.04 0.58 16 3 C 0.24 4.77 13.86 89.44 1.24 6.01 16 4 N -0.49 -12.51 18.54 20.01 0.37 -12.14 16 5 C -0.10 -1.62 4.69 30.59 0.14 -1.48 16 6 C -0.10 -2.11 5.15 30.59 0.16 -1.95 16 7 C 0.08 1.85 2.49 44.92 0.11 1.96 16 8 N -0.69 -21.59 6.31 -491.57 -3.10 -24.70 16 9 C 0.09 3.43 5.42 86.30 0.47 3.90 16 10 C 0.03 1.64 5.23 29.85 0.16 1.79 16 11 C -0.55 -30.74 9.11 25.60 0.23 -30.51 16 12 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 13 C 0.00 0.10 5.46 84.65 0.46 0.56 16 14 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 15 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.11 -1.82 4.92 30.60 0.15 -1.67 16 20 C -0.10 -1.34 4.69 30.59 0.14 -1.20 16 21 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.09 1.09 4.81 -2.39 -0.01 1.07 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.29 7.45 -2.39 -0.02 1.28 16 27 H 0.08 1.62 6.43 -2.39 -0.02 1.60 16 28 H 0.03 0.83 7.80 -2.39 -0.02 0.81 16 29 H 0.34 10.28 8.35 -89.69 -0.75 9.53 16 30 H 0.06 2.28 7.44 -2.39 -0.02 2.26 16 31 H 0.01 0.55 8.05 -2.39 -0.02 0.53 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.07 1.15 8.12 -2.39 -0.02 1.14 16 36 H 0.09 1.32 6.43 -2.39 -0.02 1.31 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.87 304.50 3.65 -62.21 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.29 Total: 7.95 kcal Atomic # 6 Polarization: -26.95 SS G_CDS: 3.79 Total: -23.16 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -2.45 Total: -92.82 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.87 3.65 -62.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173588149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.969 kcal (2) G-P(sol) polarization free energy of solvation -65.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds