Wall clock time and date at job start Sun Mar 29 2020 22:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47308 * 2 1 4 4 C 1.50704 * 109.47028 * 119.99870 * 2 1 3 5 5 H 1.07994 * 120.00106 * 114.31352 * 4 2 1 6 6 C 1.37878 * 119.99859 * 294.31727 * 4 2 1 7 7 N 1.31518 * 120.00131 * 0.94418 * 6 4 2 8 8 Si 1.86802 * 119.99896 * 180.94436 * 6 4 2 9 9 H 1.48497 * 109.47123 * 265.00866 * 8 6 4 10 10 H 1.48498 * 109.47232 * 25.00884 * 8 6 4 11 11 H 1.48497 * 109.47061 * 145.00578 * 8 6 4 12 12 N 1.46901 * 109.47164 * 239.99513 * 2 1 3 13 13 C 1.46905 * 110.99634 * 83.28123 * 12 2 1 14 14 C 1.53003 * 109.46729 * 207.20389 * 13 12 2 15 15 C 1.53006 * 109.46783 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47108 * 59.99792 * 15 14 13 17 17 C 1.52998 * 109.47357 * 180.02562 * 16 15 14 18 18 C 1.47204 * 109.47352 * 60.00006 * 16 15 14 19 19 N 6.29366 * 125.67575 * 263.02925 * 2 1 3 20 20 C 1.52996 * 109.47474 * 300.00081 * 16 15 14 21 21 C 1.52997 * 109.46951 * 87.20311 * 13 12 2 22 22 H 1.08998 * 109.47259 * 66.88607 * 1 2 3 23 23 H 1.09001 * 109.47112 * 186.89346 * 1 2 3 24 24 H 1.09006 * 109.46818 * 306.88732 * 1 2 3 25 25 H 0.96997 * 119.99673 * 180.02562 * 7 6 4 26 26 H 1.00897 * 111.00099 * 207.23498 * 12 2 1 27 27 H 1.08995 * 109.47015 * 327.20344 * 13 12 2 28 28 H 1.08999 * 109.46858 * 299.99870 * 14 13 12 29 29 H 1.08990 * 109.47092 * 60.00307 * 14 13 12 30 30 H 1.08995 * 109.46803 * 299.99858 * 15 14 13 31 31 H 1.08996 * 109.46689 * 179.97438 * 15 14 13 32 32 H 1.08990 * 109.47489 * 180.02562 * 17 16 15 33 33 H 1.09003 * 109.46756 * 300.00036 * 17 16 15 34 34 H 1.08999 * 109.47081 * 59.99564 * 17 16 15 35 35 H 1.09004 * 109.47314 * 300.00137 * 20 16 15 36 36 H 1.08996 * 109.47771 * 179.97438 * 20 16 15 37 37 H 1.08996 * 109.47225 * 300.00091 * 21 13 12 38 38 H 1.09007 * 109.47109 * 59.99777 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5754 -1.6389 1.1341 6 6 1.7985 -0.1749 2.4794 7 7 1.1211 0.9461 2.5979 8 14 2.4440 -1.0418 4.0030 9 1 1.3798 -1.9110 4.5662 10 1 3.6203 -1.8719 3.6393 11 1 2.8450 -0.0315 5.0148 12 7 2.0197 -0.6926 -1.1994 13 6 2.0439 0.2120 -2.3566 14 6 1.8848 -0.6011 -3.6429 15 6 1.9106 0.3410 -4.8482 16 6 3.2436 1.0913 -4.8806 17 6 3.2692 2.0338 -6.0855 18 6 4.3483 0.1245 -4.9898 19 7 5.2005 -0.6205 -5.0747 20 6 3.4027 1.9043 -3.5944 21 6 3.3766 0.9627 -2.3893 22 1 -0.3634 0.4034 -0.9451 23 1 -0.3633 -1.0202 0.1233 24 1 -0.3633 0.6169 0.8220 25 1 0.9570 1.3229 3.4765 26 1 2.9299 -1.0968 -1.0373 27 1 1.2257 0.9276 -2.2755 28 1 2.7030 -1.3167 -3.7239 29 1 0.9353 -1.1358 -3.6195 30 1 1.0926 1.0569 -4.7673 31 1 1.7977 -0.2383 -5.7645 32 1 4.2190 2.5679 -6.1089 33 1 3.1557 1.4549 -7.0021 34 1 2.4512 2.7496 -6.0043 35 1 2.5848 2.6202 -3.5135 36 1 4.3526 2.4384 -3.6172 37 1 3.4900 1.5419 -1.4729 38 1 4.1949 0.2471 -2.4703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173591812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:39 Heat of formation + Delta-G solvation = -1.163680 kcal Electronic energy + Delta-G solvation = -17106.679301 eV Core-core repulsion = 14561.863633 eV Total energy + Delta-G solvation = -2544.815668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.69897 -36.38901 -35.05267 -32.97230 -30.96826 -30.70197 -27.96353 -25.45263 -24.78232 -22.67606 -22.44676 -20.41077 -19.60618 -16.96184 -16.08785 -15.09164 -14.87657 -14.83087 -14.13513 -13.89325 -13.63915 -13.49896 -12.80201 -12.67334 -12.56377 -12.22336 -12.06890 -11.99184 -11.61852 -11.54997 -11.23843 -11.02947 -10.96691 -10.82743 -10.47283 -10.43086 -10.24309 -10.15349 -9.96786 -9.65473 -8.82064 -8.48347 -7.20986 -6.03721 -4.07871 2.85636 2.87234 3.29957 3.36804 3.40667 3.86597 4.40954 4.62250 4.68673 4.81365 5.13079 5.22846 5.30366 5.38979 5.48528 5.52881 5.57559 5.60504 5.75157 5.87782 5.93337 6.04288 6.07799 6.17410 6.29663 6.39330 6.65875 6.67682 6.88187 7.12270 7.22647 7.51194 7.64565 7.80634 7.88037 8.22237 8.40730 8.70721 9.04150 9.58342 11.04573 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.005657 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.265683 B = 4948.426543 C = 5134.723129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.211 3.789 3 H 0.006 0.994 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.686 5.686 13 C 0.090 3.910 14 C -0.111 4.111 15 C -0.105 4.105 16 C 0.034 3.966 17 C -0.140 4.140 18 C 0.225 3.775 19 N -0.445 5.445 20 C -0.102 4.102 21 C -0.152 4.152 22 H 0.007 0.993 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 4.288 -14.518 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 H 0.024 0.976 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.315 5.315 13 C -0.021 4.021 14 C -0.150 4.150 15 C -0.144 4.144 16 C 0.031 3.969 17 C -0.199 4.199 18 C -0.093 4.093 19 N -0.119 5.119 20 C -0.141 4.141 21 C -0.192 4.192 22 H 0.026 0.974 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.414 3.002 -14.635 15.006 hybrid contribution 0.824 0.386 1.244 1.541 sum 2.238 3.387 -13.391 13.992 Atomic orbital electron populations 1.21679 0.98159 0.99926 0.97979 1.19106 0.92216 0.92623 0.85680 0.97644 1.21262 1.35554 1.08105 0.90736 0.92289 1.24914 0.95112 0.94922 0.98981 1.69933 1.40089 1.19361 1.23592 0.86547 0.79203 0.79285 0.82752 1.20708 1.19923 1.21288 1.60772 1.31080 1.34134 1.05514 1.21526 0.95352 0.93576 0.91689 1.21603 1.02567 0.97589 0.93215 1.21673 0.94320 0.99039 0.99415 1.18457 0.89199 0.91261 0.98017 1.21875 1.03222 0.98824 0.95957 1.29033 0.93931 0.93789 0.92549 1.81143 1.11367 1.10297 1.09126 1.21609 1.02916 0.97622 0.91996 1.22368 0.99768 0.99027 0.98003 0.97381 0.94851 0.91423 0.93006 0.85171 0.90736 0.92655 0.90807 0.89775 0.91375 0.91902 0.91887 0.90378 0.89749 0.91549 0.90846 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 9.17 37.16 0.34 -2.53 16 2 C 0.21 5.20 2.33 -68.86 -0.16 5.04 16 3 H 0.01 0.16 7.28 -51.93 -0.38 -0.22 16 4 C -0.52 -14.14 8.49 -34.44 -0.29 -14.43 16 5 H 0.06 1.61 7.70 -52.49 -0.40 1.21 16 6 C 0.06 1.72 5.34 -17.82 -0.10 1.63 16 7 N -0.89 -25.31 11.78 55.43 0.65 -24.66 16 8 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.69 -14.24 6.05 -100.95 -0.61 -14.85 16 13 C 0.09 1.48 2.24 -67.71 -0.15 1.33 16 14 C -0.11 -1.55 5.31 -26.73 -0.14 -1.69 16 15 C -0.11 -1.08 4.71 -26.73 -0.13 -1.21 16 16 C 0.03 0.35 0.72 -157.30 -0.11 0.24 16 17 C -0.14 -1.03 8.43 37.16 0.31 -0.72 16 18 C 0.22 3.02 11.36 -20.79 -0.24 2.78 16 19 N -0.44 -7.14 18.53 42.12 0.78 -6.36 16 20 C -0.10 -1.14 4.70 -26.76 -0.13 -1.27 16 21 C -0.15 -2.31 4.93 -26.76 -0.13 -2.44 16 22 H 0.01 0.16 7.26 -51.93 -0.38 -0.22 16 23 H 0.03 0.81 8.13 -51.93 -0.42 0.38 16 24 H 0.07 1.77 6.67 -51.93 -0.35 1.42 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.33 7.01 8.00 -39.29 -0.31 6.69 16 27 H 0.07 1.27 6.98 -51.93 -0.36 0.91 16 28 H 0.05 0.84 7.22 -51.93 -0.38 0.47 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.26 7.57 -51.93 -0.39 0.86 16 38 H 0.06 0.92 7.21 -51.92 -0.37 0.54 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -29.58 302.42 -6.83 -36.40 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.26 Total: 1.86 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.92 Total: -13.28 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.82 Total: -45.87 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.58 -6.83 -36.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173591812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.238 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds