Wall clock time and date at job start Sun Mar 29 2020 22:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47308 * 2 1 4 4 C 1.50704 * 109.47028 * 119.99870 * 2 1 3 5 5 H 1.07994 * 120.00106 * 114.31352 * 4 2 1 6 6 C 1.37878 * 119.99859 * 294.31727 * 4 2 1 7 7 N 1.31518 * 120.00131 * 0.94418 * 6 4 2 8 8 Si 1.86802 * 119.99896 * 180.94436 * 6 4 2 9 9 H 1.48497 * 109.47123 * 265.00866 * 8 6 4 10 10 H 1.48498 * 109.47232 * 25.00884 * 8 6 4 11 11 H 1.48497 * 109.47061 * 145.00578 * 8 6 4 12 12 N 1.46901 * 109.47164 * 239.99513 * 2 1 3 13 13 C 1.46905 * 110.99634 * 83.28123 * 12 2 1 14 14 C 1.53003 * 109.46729 * 207.20389 * 13 12 2 15 15 C 1.53006 * 109.46783 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47108 * 59.99792 * 15 14 13 17 17 C 1.52998 * 109.47357 * 180.02562 * 16 15 14 18 18 C 1.47204 * 109.47352 * 60.00006 * 16 15 14 19 19 N 6.29366 * 125.67575 * 263.02925 * 2 1 3 20 20 C 1.52996 * 109.47474 * 300.00081 * 16 15 14 21 21 C 1.52997 * 109.46951 * 87.20311 * 13 12 2 22 22 H 1.08998 * 109.47259 * 66.88607 * 1 2 3 23 23 H 1.09001 * 109.47112 * 186.89346 * 1 2 3 24 24 H 1.09006 * 109.46818 * 306.88732 * 1 2 3 25 25 H 0.96997 * 119.99673 * 180.02562 * 7 6 4 26 26 H 1.00897 * 111.00099 * 207.23498 * 12 2 1 27 27 H 1.08995 * 109.47015 * 327.20344 * 13 12 2 28 28 H 1.08999 * 109.46858 * 299.99870 * 14 13 12 29 29 H 1.08990 * 109.47092 * 60.00307 * 14 13 12 30 30 H 1.08995 * 109.46803 * 299.99858 * 15 14 13 31 31 H 1.08996 * 109.46689 * 179.97438 * 15 14 13 32 32 H 1.08990 * 109.47489 * 180.02562 * 17 16 15 33 33 H 1.09003 * 109.46756 * 300.00036 * 17 16 15 34 34 H 1.08999 * 109.47081 * 59.99564 * 17 16 15 35 35 H 1.09004 * 109.47314 * 300.00137 * 20 16 15 36 36 H 1.08996 * 109.47771 * 179.97438 * 20 16 15 37 37 H 1.08996 * 109.47225 * 300.00091 * 21 13 12 38 38 H 1.09007 * 109.47109 * 59.99777 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5754 -1.6389 1.1341 6 6 1.7985 -0.1749 2.4794 7 7 1.1211 0.9461 2.5979 8 14 2.4440 -1.0418 4.0030 9 1 1.3798 -1.9110 4.5662 10 1 3.6203 -1.8719 3.6393 11 1 2.8450 -0.0315 5.0148 12 7 2.0197 -0.6926 -1.1994 13 6 2.0439 0.2120 -2.3566 14 6 1.8848 -0.6011 -3.6429 15 6 1.9106 0.3410 -4.8482 16 6 3.2436 1.0913 -4.8806 17 6 3.2692 2.0338 -6.0855 18 6 4.3483 0.1245 -4.9898 19 7 5.2005 -0.6205 -5.0747 20 6 3.4027 1.9043 -3.5944 21 6 3.3766 0.9627 -2.3893 22 1 -0.3634 0.4034 -0.9451 23 1 -0.3633 -1.0202 0.1233 24 1 -0.3633 0.6169 0.8220 25 1 0.9570 1.3229 3.4765 26 1 2.9299 -1.0968 -1.0373 27 1 1.2257 0.9276 -2.2755 28 1 2.7030 -1.3167 -3.7239 29 1 0.9353 -1.1358 -3.6195 30 1 1.0926 1.0569 -4.7673 31 1 1.7977 -0.2383 -5.7645 32 1 4.2190 2.5679 -6.1089 33 1 3.1557 1.4549 -7.0021 34 1 2.4512 2.7496 -6.0043 35 1 2.5848 2.6202 -3.5135 36 1 4.3526 2.4384 -3.6172 37 1 3.4900 1.5419 -1.4729 38 1 4.1949 0.2471 -2.4703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173591812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:39 Heat of formation + Delta-G solvation = -19.562687 kcal Electronic energy + Delta-G solvation = -17107.477142 eV Core-core repulsion = 14561.863633 eV Total energy + Delta-G solvation = -2545.613508 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.75887 -37.84850 -36.40208 -34.66561 -32.49274 -31.77519 -29.49909 -27.31534 -26.06790 -23.73674 -23.48068 -21.89382 -21.26833 -18.62381 -17.55149 -16.75871 -16.18424 -15.82510 -15.57394 -15.43753 -14.84605 -14.57045 -14.20935 -14.10482 -13.65905 -13.53305 -13.37283 -13.05783 -12.89328 -12.76393 -12.70099 -12.57618 -12.40717 -12.24815 -12.22485 -11.97253 -11.93093 -11.55260 -11.12344 -11.05604 -10.82402 -10.57169 -8.92137 -8.14966 -6.25968 1.39629 1.40932 1.51100 1.81015 1.84748 2.40865 2.94654 3.16016 3.57778 3.75561 3.85741 4.01136 4.11675 4.32773 4.48666 4.56688 4.57511 4.84952 4.85743 4.90924 4.96563 4.99920 5.07240 5.11431 5.16825 5.22240 5.27364 5.28472 5.40884 5.42575 5.48660 5.57289 5.73369 5.89014 6.22058 6.51395 6.62577 6.85563 7.02328 7.44485 8.92536 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.005657 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.265683 B = 4948.426543 C = 5134.723129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.218 3.782 3 H -0.021 1.021 4 C -0.539 4.539 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.281 1.281 12 N -0.689 5.689 13 C 0.088 3.912 14 C -0.105 4.105 15 C -0.100 4.100 16 C 0.038 3.962 17 C -0.136 4.136 18 C 0.242 3.758 19 N -0.499 5.499 20 C -0.097 4.097 21 C -0.146 4.146 22 H 0.034 0.966 23 H 0.024 0.976 24 H 0.043 0.957 25 H 0.262 0.738 26 H 0.324 0.676 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 5.134 -16.049 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 H -0.003 1.003 4 C -0.577 4.577 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.207 1.207 12 N -0.317 5.317 13 C -0.023 4.023 14 C -0.143 4.143 15 C -0.138 4.138 16 C 0.035 3.965 17 C -0.194 4.194 18 C -0.075 4.075 19 N -0.175 5.175 20 C -0.136 4.136 21 C -0.186 4.186 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.141 0.859 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.837 3.848 -16.188 16.660 hybrid contribution 0.999 0.121 1.719 1.992 sum 1.836 3.969 -14.469 15.115 Atomic orbital electron populations 1.21494 0.97688 0.98930 0.98393 1.18879 0.92469 0.91112 0.86580 1.00336 1.21588 1.35750 1.08100 0.92266 0.93093 1.25652 0.95307 0.95599 1.01725 1.70036 1.40812 1.20391 1.24287 0.85582 0.78646 0.78311 0.79306 1.20177 1.19705 1.20687 1.60741 1.30690 1.34960 1.05357 1.21661 0.95987 0.93461 0.91145 1.21524 1.01611 0.97746 0.93446 1.21709 0.95025 0.99022 0.98079 1.18693 0.87906 0.90961 0.98973 1.21902 1.04583 0.98548 0.94372 1.29760 0.93638 0.93162 0.90914 1.81154 1.13220 1.12093 1.11033 1.21619 1.04605 0.97095 0.90275 1.22232 0.98262 0.99049 0.99039 0.94756 0.95714 0.93779 0.92857 0.85896 0.90804 0.94528 0.91085 0.87045 0.89402 0.91568 0.90947 0.87768 0.87343 0.90511 0.93557 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.17 9.17 71.98 0.66 -4.51 16 2 C 0.22 10.96 2.33 44.17 0.10 11.06 16 3 H -0.02 -1.15 7.28 -2.39 -0.02 -1.17 16 4 C -0.54 -30.01 8.49 25.60 0.22 -29.80 16 5 H 0.05 2.85 7.70 -2.91 -0.02 2.83 16 6 C 0.02 0.93 5.34 84.65 0.45 1.38 16 7 N -0.92 -52.70 11.78 21.45 0.25 -52.44 16 8 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.69 -29.09 6.05 -473.29 -2.86 -31.96 16 13 C 0.09 2.84 2.24 44.91 0.10 2.94 16 14 C -0.10 -2.77 5.31 30.60 0.16 -2.60 16 15 C -0.10 -1.69 4.71 30.60 0.14 -1.54 16 16 C 0.04 0.67 0.72 -53.99 -0.04 0.63 16 17 C -0.14 -1.39 8.43 71.98 0.61 -0.79 16 18 C 0.24 6.17 11.36 89.45 1.02 7.19 16 19 N -0.50 -15.96 18.53 20.00 0.37 -15.59 16 20 C -0.10 -1.93 4.70 30.58 0.14 -1.78 16 21 C -0.15 -4.43 4.93 30.58 0.15 -4.28 16 22 H 0.03 1.43 7.26 -2.39 -0.02 1.41 16 23 H 0.02 1.19 8.13 -2.39 -0.02 1.17 16 24 H 0.04 2.33 6.67 -2.38 -0.02 2.31 16 25 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.32 14.25 8.00 -89.70 -0.72 13.53 16 27 H 0.07 2.42 6.98 -2.39 -0.02 2.40 16 28 H 0.04 1.10 7.22 -2.39 -0.02 1.08 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.63 7.57 -2.39 -0.02 1.61 16 38 H 0.04 1.29 7.21 -2.38 -0.02 1.28 16 Total: -1.00 -65.72 302.42 3.82 -61.90 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.32 Total: 14.03 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 3.72 Total: -22.10 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -2.24 Total: -99.99 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -65.72 3.82 -61.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173591812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.338 kcal (2) G-P(sol) polarization free energy of solvation -65.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds