Wall clock time and date at job start Sun Mar 29 2020 21:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00366 * 2 1 4 4 C 1.50701 * 109.47283 * 66.04814 * 3 2 1 5 5 H 1.08006 * 119.99271 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00201 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00004 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99820 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47244 * 89.99775 * 8 6 4 10 10 H 1.48499 * 109.47101 * 209.99826 * 8 6 4 11 11 H 1.48499 * 109.47124 * 330.00066 * 8 6 4 12 12 C 1.46899 * 110.99817 * 236.04715 * 2 1 3 13 13 C 1.53006 * 109.47467 * 303.95320 * 12 2 1 14 14 C 1.52997 * 109.47445 * 180.02562 * 13 12 2 15 15 C 1.52999 * 109.47269 * 59.99603 * 14 13 12 16 16 C 1.53006 * 109.46623 * 60.00164 * 15 14 13 17 17 C 1.47202 * 109.46993 * 179.97438 * 15 14 13 18 18 N 6.78222 * 115.93266 * 223.77982 * 2 1 3 19 19 C 1.52997 * 109.47317 * 300.00344 * 15 14 13 20 20 C 1.52997 * 109.47232 * 59.99633 * 19 15 14 21 21 H 1.09005 * 109.47272 * 183.95774 * 1 2 3 22 22 H 1.09001 * 109.46789 * 303.95116 * 1 2 3 23 23 H 1.08992 * 109.47574 * 63.94961 * 1 2 3 24 24 H 1.08995 * 109.47735 * 186.05238 * 3 2 1 25 25 H 1.09006 * 109.46914 * 306.05149 * 3 2 1 26 26 H 0.97000 * 119.99719 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47496 * 63.95107 * 12 2 1 28 28 H 1.09001 * 109.46726 * 59.99747 * 13 12 2 29 29 H 1.09002 * 109.46589 * 300.00343 * 13 12 2 30 30 H 1.09002 * 109.47045 * 300.00058 * 14 13 12 31 31 H 1.09000 * 109.47140 * 180.02562 * 14 13 12 32 32 H 1.09001 * 109.47002 * 179.97438 * 16 15 14 33 33 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 34 34 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 35 35 H 1.09001 * 109.46832 * 179.97438 * 19 15 14 36 36 H 1.09002 * 109.47153 * 299.99641 * 19 15 14 37 37 H 1.09000 * 109.47140 * 179.97438 * 20 19 15 38 38 H 1.09002 * 109.47045 * 59.99942 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0747 1.5111 2.0488 6 6 2.0270 3.3494 1.5285 7 7 2.7121 4.0018 0.6150 8 14 1.5832 4.1867 3.1383 9 1 2.6607 3.9505 4.1326 10 1 1.4304 5.6463 2.9115 11 1 0.3060 3.6289 3.6508 12 6 1.9953 -0.7660 -1.1376 13 6 1.4260 -2.1857 -1.1038 14 6 1.9747 -2.9837 -2.2883 15 6 3.5009 -3.0440 -2.1994 16 6 3.9090 -3.7261 -0.8920 17 6 4.0288 -3.8122 -3.3387 18 7 4.4349 -4.4037 -4.2200 19 6 4.0703 -1.6243 -2.2332 20 6 3.5215 -0.8264 -1.0487 21 1 -0.3634 -1.0253 0.0709 22 1 -0.3633 0.5740 0.8525 23 1 -0.3634 0.4513 -0.9232 24 1 3.0797 1.3444 -0.1083 25 1 1.5610 1.9273 -0.8309 26 1 2.9867 4.9179 0.7770 27 1 1.7042 -0.2799 -2.0688 28 1 0.3386 -2.1426 -1.1667 29 1 1.7171 -2.6718 -0.1726 30 1 1.6840 -2.4977 -3.2197 31 1 1.5687 -3.9950 -2.2644 32 1 4.9963 -3.7695 -0.8288 33 1 3.5180 -3.1577 -0.0482 34 1 3.5033 -4.7375 -0.8679 35 1 5.1576 -1.6673 -2.1694 36 1 3.7796 -1.1383 -3.1646 37 1 3.9276 0.1849 -1.0726 38 1 3.8123 -1.3123 -0.1174 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173592478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:39 Heat of formation + Delta-G solvation = 13.715922 kcal Electronic energy + Delta-G solvation = -17124.403764 eV Core-core repulsion = 14580.233325 eV Total energy + Delta-G solvation = -2544.170440 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.84309 -36.87462 -35.29999 -32.63391 -30.92696 -30.60863 -27.29282 -26.81952 -24.92198 -22.88474 -22.04908 -20.49175 -18.93470 -17.48856 -16.35756 -15.05565 -14.87815 -14.83508 -14.52628 -13.85135 -13.74937 -13.44951 -12.95221 -12.91776 -12.57953 -12.38467 -12.11616 -12.06334 -11.90789 -11.37329 -11.23275 -11.04509 -10.96431 -10.89617 -10.76723 -10.57350 -10.43460 -10.01560 -10.00840 -9.44415 -9.16394 -8.41108 -7.22223 -6.02768 -4.03442 2.71999 2.73282 3.31894 3.38188 3.41308 3.80568 4.41846 4.62964 4.67426 4.78875 5.05229 5.28023 5.32050 5.33383 5.42155 5.59048 5.61597 5.72626 5.76869 5.85294 5.95617 5.98596 6.07303 6.11606 6.20394 6.31345 6.35745 6.43281 6.63057 6.75274 6.79883 7.32749 7.36428 7.51530 7.81245 8.11154 8.21519 8.57126 9.04403 9.60680 11.08077 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.044973 B = 0.005395 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.442243 B = 5188.941029 C = 5435.220258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.536 5.536 3 C 0.188 3.812 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.083 3.917 13 C -0.113 4.113 14 C -0.103 4.103 15 C 0.036 3.964 16 C -0.145 4.145 17 C 0.222 3.778 18 N -0.450 5.450 19 C -0.104 4.104 20 C -0.113 4.113 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.037 0.963 25 H -0.012 1.012 26 H 0.261 0.739 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -12.029 -3.041 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.261 5.261 3 C 0.063 3.937 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.026 4.026 13 C -0.151 4.151 14 C -0.143 4.143 15 C 0.032 3.968 16 C -0.203 4.203 17 C -0.096 4.096 18 N -0.124 5.124 19 C -0.144 4.144 20 C -0.150 4.150 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.027 0.973 24 H 0.055 0.945 25 H 0.006 0.994 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.215 -12.976 -3.989 13.577 hybrid contribution -0.594 1.263 0.288 1.425 sum -0.379 -11.713 -3.701 12.289 Atomic orbital electron populations 1.22255 0.89122 0.99584 1.00431 1.62157 1.06652 1.17697 1.39558 1.19812 0.95862 0.81600 0.96403 1.21179 1.34690 0.96859 1.01746 0.91915 1.24975 0.95381 0.97374 0.96869 1.69953 1.38499 1.11463 1.33987 0.86529 0.78848 0.78456 0.83751 1.20654 1.21407 1.19902 1.21559 0.94526 0.93353 0.93168 1.21703 1.00260 0.95394 0.97761 1.21594 0.91276 1.01108 1.00279 1.18400 0.96352 0.93928 0.88077 1.22008 1.02048 1.00611 0.95675 1.29408 0.92904 0.93184 0.94058 1.81192 1.09575 1.10350 1.11300 1.21630 1.00440 0.91732 1.00556 1.21674 0.95067 1.00987 0.97315 0.93298 0.90853 0.97284 0.94464 0.99406 0.92977 0.95259 0.91357 0.90402 0.91339 0.91255 0.91933 0.89025 0.92119 0.91082 0.91330 0.90159 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 8.92 60.06 0.54 1.17 16 2 N -0.54 -10.59 4.62 -236.34 -1.09 -11.68 16 3 C 0.19 4.63 4.54 -4.98 -0.02 4.61 16 4 C -0.51 -13.70 8.46 -34.44 -0.29 -13.99 16 5 H 0.06 1.68 7.12 -52.48 -0.37 1.31 16 6 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.08 1.30 1.95 -67.71 -0.13 1.17 16 13 C -0.11 -1.37 4.57 -26.73 -0.12 -1.49 16 14 C -0.10 -1.06 4.69 -26.73 -0.13 -1.19 16 15 C 0.04 0.38 0.69 -157.29 -0.11 0.27 16 16 C -0.15 -1.35 7.73 37.16 0.29 -1.06 16 17 C 0.22 2.76 13.86 -20.74 -0.29 2.47 16 18 N -0.45 -6.63 18.54 42.17 0.78 -5.85 16 19 C -0.10 -1.22 4.69 -26.73 -0.13 -1.34 16 20 C -0.11 -1.63 4.72 -26.73 -0.13 -1.76 16 21 H 0.05 0.73 6.24 -51.93 -0.32 0.41 16 22 H 0.07 1.46 6.76 -51.93 -0.35 1.11 16 23 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.04 0.96 5.83 -51.93 -0.30 0.66 16 25 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 29 H 0.08 0.92 6.43 -51.93 -0.33 0.58 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.88 4.81 -51.93 -0.25 0.63 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.37 6.20 -51.93 -0.32 1.04 16 38 H 0.08 1.09 6.43 -51.93 -0.33 0.76 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -29.55 295.30 -6.62 -36.17 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -5.86 Total: -4.16 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.61 Total: -9.72 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.43 Total: -42.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.55 -6.62 -36.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173592478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.887 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds