Wall clock time and date at job start Sun Mar 29 2020 22:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36865 * 120.00033 * 2 1 4 4 H 1.08000 * 119.99935 * 154.96363 * 3 2 1 5 5 C 1.39051 * 120.00289 * 334.96375 * 3 2 1 6 6 N 1.31363 * 119.99813 * 349.54078 * 5 3 2 7 7 Si 1.86801 * 120.00201 * 169.53819 * 5 3 2 8 8 H 1.48500 * 109.47234 * 60.00207 * 7 5 3 9 9 H 1.48499 * 109.46788 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46833 * 299.99999 * 7 5 3 11 11 C 1.34776 * 119.99772 * 180.02562 * 2 1 3 12 12 O 1.21586 * 119.99503 * 185.85586 * 11 2 1 13 13 C 1.47750 * 120.00014 * 5.84770 * 11 2 1 14 14 C 1.39701 * 120.10900 * 215.20164 * 13 11 2 15 15 C 1.37980 * 120.00311 * 180.02562 * 14 13 11 16 16 C 1.38234 * 120.24358 * 359.72813 * 15 14 13 17 17 C 1.39068 * 120.22413 * 0.55001 * 16 15 14 18 18 S 1.76207 * 120.00446 * 179.72131 * 17 16 15 19 19 C 1.38717 * 119.98607 * 359.44853 * 17 16 15 20 20 H 1.08997 * 109.47295 * 204.87711 * 1 2 3 21 21 H 1.09003 * 109.46912 * 324.87693 * 1 2 3 22 22 H 1.08995 * 109.46866 * 84.87646 * 1 2 3 23 23 H 0.96998 * 120.00423 * 180.02562 * 6 5 3 24 24 H 1.08001 * 119.99965 * 0.02562 * 14 13 11 25 25 H 1.08007 * 119.87666 * 180.02562 * 15 14 13 26 26 H 1.08004 * 119.89392 * 180.30135 * 16 15 14 27 27 H 1.34503 * 102.99541 * 269.72617 * 18 17 16 28 28 H 1.07998 * 120.11980 * 180.25136 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1533 1.2292 0.3958 5 6 1.5522 2.3330 -0.5096 6 7 0.4224 2.2457 -1.1742 7 14 2.3564 3.9988 -0.2491 8 1 3.7094 3.9964 -0.8613 9 1 1.5268 5.0537 -0.8848 10 1 2.4719 4.2704 1.2062 11 6 2.1389 -1.1672 -0.0005 12 8 3.3500 -1.1700 0.1069 13 6 1.4059 -2.4434 -0.1315 14 6 1.8497 -3.5795 0.5495 15 6 1.1638 -4.7703 0.4253 16 6 0.0336 -4.8433 -0.3673 17 6 -0.4136 -3.7198 -1.0541 18 16 -1.8508 -3.8213 -2.0686 19 6 0.2687 -2.5179 -0.9359 20 1 -0.3634 -0.9323 0.4323 21 1 -0.3633 0.8406 0.5913 22 1 -0.3633 0.0918 -1.0235 23 1 0.0060 3.0462 -1.5300 24 1 2.7297 -3.5259 1.1733 25 1 1.5085 -5.6474 0.9530 26 1 -0.5018 -5.7771 -0.4567 27 1 -1.3499 -4.1621 -3.2695 28 1 -0.0790 -1.6430 -1.4652 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186149749.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:29 Heat of formation + Delta-G solvation = 8.864499 kcal Electronic energy + Delta-G solvation = -14400.629690 eV Core-core repulsion = 11929.616897 eV Total energy + Delta-G solvation = -2471.012793 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.48665 -37.48382 -34.79153 -32.02704 -30.75464 -30.57657 -26.38242 -25.02847 -22.77602 -22.46906 -19.76217 -17.59300 -17.01174 -16.34806 -16.00593 -15.06088 -14.97862 -14.27066 -14.00783 -13.81898 -13.28454 -12.76519 -12.49470 -11.96093 -11.70809 -11.50551 -11.26242 -11.01615 -10.78792 -10.53262 -10.44543 -10.34129 -9.10231 -8.71840 -8.69284 -8.45059 -8.05469 -7.74651 -6.40100 -3.96493 1.07992 1.42230 1.83922 2.87188 3.16060 3.20991 3.24748 3.62186 4.06850 4.26321 4.74179 5.00951 5.10761 5.22075 5.46843 5.63417 5.66682 5.90696 6.11163 6.31660 6.43427 6.53236 6.72764 6.81074 7.02035 7.17001 7.48144 8.05459 8.39970 9.08786 9.30605 9.88193 10.62392 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.033504 B = 0.007343 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.519200 B = 3812.374109 C = 4526.062482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.429 5.429 3 C -0.308 4.308 4 H 0.101 0.899 5 C 0.034 3.966 6 N -0.876 5.876 7 Si 0.931 3.069 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.475 3.525 12 O -0.587 6.587 13 C -0.100 4.100 14 C -0.054 4.054 15 C -0.137 4.137 16 C -0.072 4.072 17 C -0.119 4.119 18 S -0.134 6.134 19 C -0.050 4.050 20 H 0.036 0.964 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.271 0.729 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.072 0.928 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -9.842 0.740 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.146 5.146 3 C -0.436 4.436 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.514 5.514 7 Si 0.757 3.243 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.198 1.198 11 C 0.263 3.737 12 O -0.474 6.474 13 C -0.106 4.106 14 C -0.073 4.073 15 C -0.157 4.157 16 C -0.094 4.094 17 C -0.230 4.230 18 S 0.023 5.977 19 C -0.071 4.071 20 H 0.054 0.946 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.150 0.850 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.036 0.964 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.398 -9.632 0.334 11.047 hybrid contribution 1.427 0.659 -0.343 1.609 sum -3.971 -8.973 -0.009 9.813 Atomic orbital electron populations 1.21856 0.80967 0.98858 1.02341 1.43478 1.05689 1.04681 1.60704 1.19644 1.00923 0.84337 1.38700 0.88151 1.25429 0.96425 1.00295 0.94934 1.69935 1.18102 1.30171 1.33163 0.85925 0.79107 0.80467 0.78805 1.19654 1.20806 1.19751 1.17927 0.87127 0.83105 0.85504 1.90607 1.13596 1.86757 1.56394 1.20429 0.95541 0.96032 0.98582 1.21445 0.98364 0.91397 0.96109 1.21071 0.96128 0.97957 1.00564 1.21551 0.95353 0.97252 0.95194 1.21063 1.00399 0.96617 1.04957 1.85871 1.10342 1.93059 1.08431 1.22242 0.92111 0.97131 0.95611 0.94583 0.91728 0.91261 0.91866 0.84965 0.85363 0.85265 0.96403 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.32 7.09 59.85 0.42 2.74 15 2 N -0.43 -11.10 3.01 -123.31 -0.37 -11.47 15 3 C -0.31 -8.54 9.26 -15.00 -0.14 -8.68 15 4 H 0.10 2.90 7.40 -52.49 -0.39 2.51 15 5 C 0.03 0.88 5.15 -17.45 -0.09 0.79 15 6 N -0.88 -22.86 10.69 55.50 0.59 -22.27 15 7 Si 0.93 20.44 29.57 -169.99 -5.03 15.41 15 8 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 10 H -0.27 -5.89 7.11 56.52 0.40 -5.48 15 11 C 0.47 11.95 7.31 -12.37 -0.09 11.86 15 12 O -0.59 -16.64 16.53 5.29 0.09 -16.55 15 13 C -0.10 -2.03 5.16 -104.99 -0.54 -2.57 15 14 C -0.05 -0.92 9.61 -39.13 -0.38 -1.29 15 15 C -0.14 -1.87 10.02 -39.68 -0.40 -2.26 15 16 C -0.07 -0.98 9.78 -39.28 -0.38 -1.36 15 17 C -0.12 -1.84 6.11 -39.10 -0.24 -2.08 15 18 S -0.13 -1.85 25.77 -107.50 -2.77 -4.62 15 19 C -0.05 -0.91 7.34 -38.94 -0.29 -1.19 15 20 H 0.04 0.71 5.74 -51.93 -0.30 0.41 15 21 H 0.06 1.50 7.41 -51.93 -0.38 1.12 15 22 H 0.07 1.59 6.22 -51.93 -0.32 1.27 15 23 H 0.27 6.70 8.31 -40.82 -0.34 6.36 15 24 H 0.13 2.20 8.00 -52.49 -0.42 1.78 15 25 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 26 H 0.13 1.38 8.06 -52.48 -0.42 0.96 15 27 H 0.07 0.93 9.07 97.61 0.89 1.81 15 28 H 0.15 2.83 5.54 -52.49 -0.29 2.54 15 LS Contribution 257.52 15.07 3.88 3.88 Total: -1.00 -29.84 257.52 -6.92 -36.76 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -1.20 Total: 2.91 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.12 Total: -4.06 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.22 Total: -33.74 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.09 Total: -16.55 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.77 Total: -4.62 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.84 -6.92 -36.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186149749.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.627 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds