Wall clock time and date at job start Sun Mar 29 2020 22:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36865 * 120.00033 * 2 1 4 4 H 1.08000 * 119.99935 * 154.96363 * 3 2 1 5 5 C 1.39051 * 120.00289 * 334.96375 * 3 2 1 6 6 N 1.31363 * 119.99813 * 349.54078 * 5 3 2 7 7 Si 1.86801 * 120.00201 * 169.53819 * 5 3 2 8 8 H 1.48500 * 109.47234 * 60.00207 * 7 5 3 9 9 H 1.48499 * 109.46788 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46833 * 299.99999 * 7 5 3 11 11 C 1.34776 * 119.99772 * 180.02562 * 2 1 3 12 12 O 1.21586 * 119.99503 * 185.85586 * 11 2 1 13 13 C 1.47750 * 120.00014 * 5.84770 * 11 2 1 14 14 C 1.39701 * 120.10900 * 215.20164 * 13 11 2 15 15 C 1.37980 * 120.00311 * 180.02562 * 14 13 11 16 16 C 1.38234 * 120.24358 * 359.72813 * 15 14 13 17 17 C 1.39068 * 120.22413 * 0.55001 * 16 15 14 18 18 S 1.76207 * 120.00446 * 179.72131 * 17 16 15 19 19 C 1.38717 * 119.98607 * 359.44853 * 17 16 15 20 20 H 1.08997 * 109.47295 * 204.87711 * 1 2 3 21 21 H 1.09003 * 109.46912 * 324.87693 * 1 2 3 22 22 H 1.08995 * 109.46866 * 84.87646 * 1 2 3 23 23 H 0.96998 * 120.00423 * 180.02562 * 6 5 3 24 24 H 1.08001 * 119.99965 * 0.02562 * 14 13 11 25 25 H 1.08007 * 119.87666 * 180.02562 * 15 14 13 26 26 H 1.08004 * 119.89392 * 180.30135 * 16 15 14 27 27 H 1.34503 * 102.99541 * 269.72617 * 18 17 16 28 28 H 1.07998 * 120.11980 * 180.25136 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1533 1.2292 0.3958 5 6 1.5522 2.3330 -0.5096 6 7 0.4224 2.2457 -1.1742 7 14 2.3564 3.9988 -0.2491 8 1 3.7094 3.9964 -0.8613 9 1 1.5268 5.0537 -0.8848 10 1 2.4719 4.2704 1.2062 11 6 2.1389 -1.1672 -0.0005 12 8 3.3500 -1.1700 0.1069 13 6 1.4059 -2.4434 -0.1315 14 6 1.8497 -3.5795 0.5495 15 6 1.1638 -4.7703 0.4253 16 6 0.0336 -4.8433 -0.3673 17 6 -0.4136 -3.7198 -1.0541 18 16 -1.8508 -3.8213 -2.0686 19 6 0.2687 -2.5179 -0.9359 20 1 -0.3634 -0.9323 0.4323 21 1 -0.3633 0.8406 0.5913 22 1 -0.3633 0.0918 -1.0235 23 1 0.0060 3.0462 -1.5300 24 1 2.7297 -3.5259 1.1733 25 1 1.5085 -5.6474 0.9530 26 1 -0.5018 -5.7771 -0.4567 27 1 -1.3499 -4.1621 -3.2695 28 1 -0.0790 -1.6430 -1.4652 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186149749.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:29 Heat of formation + Delta-G solvation = -9.611148 kcal Electronic energy + Delta-G solvation = -14401.430854 eV Core-core repulsion = 11929.616897 eV Total energy + Delta-G solvation = -2471.813957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.10886 -39.08743 -36.80068 -33.92119 -32.08441 -32.04203 -28.28255 -26.88721 -24.32494 -23.75139 -21.38620 -19.15899 -18.78129 -17.88133 -17.46568 -16.80902 -16.44833 -15.97192 -15.60955 -15.38388 -14.68326 -14.48315 -13.94764 -13.72573 -13.39142 -13.12346 -12.76702 -12.73985 -12.47969 -12.30730 -12.14091 -11.69812 -11.07582 -10.58040 -9.94893 -9.90235 -9.74481 -9.14814 -8.39423 -6.06972 -0.17252 0.11356 0.67718 1.38806 1.39964 1.50937 1.73594 2.05950 2.24128 2.71625 2.97126 3.08070 3.78575 3.91820 4.10900 4.29418 4.38809 4.51931 4.62422 4.86980 4.93708 5.17972 5.26947 5.31734 5.38110 5.40942 5.79317 6.03198 6.40259 7.06458 7.33238 7.90477 8.61906 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.033504 B = 0.007343 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.519200 B = 3812.374109 C = 4526.062482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.446 5.446 3 C -0.352 4.352 4 H 0.074 0.926 5 C 0.002 3.998 6 N -0.890 5.890 7 Si 0.995 3.005 8 H -0.275 1.275 9 H -0.267 1.267 10 H -0.266 1.266 11 C 0.466 3.534 12 O -0.633 6.633 13 C -0.132 4.132 14 C -0.060 4.060 15 C -0.117 4.117 16 C -0.050 4.050 17 C -0.125 4.125 18 S -0.121 6.121 19 C -0.058 4.058 20 H 0.061 0.939 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.278 0.722 24 H 0.128 0.872 25 H 0.175 0.825 26 H 0.172 0.828 27 H 0.082 0.918 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.295 -11.757 0.755 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.162 5.162 3 C -0.480 4.480 4 H 0.092 0.908 5 C -0.201 4.201 6 N -0.527 5.527 7 Si 0.817 3.183 8 H -0.201 1.201 9 H -0.191 1.191 10 H -0.191 1.191 11 C 0.257 3.743 12 O -0.523 6.523 13 C -0.137 4.137 14 C -0.080 4.080 15 C -0.137 4.137 16 C -0.071 4.071 17 C -0.236 4.236 18 S 0.036 5.964 19 C -0.079 4.079 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.146 0.854 25 H 0.192 0.808 26 H 0.189 0.811 27 H 0.046 0.954 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.801 -11.559 0.345 13.416 hybrid contribution 1.796 1.092 -0.394 2.138 sum -5.005 -10.467 -0.049 11.602 Atomic orbital electron populations 1.21724 0.79297 0.99491 1.01686 1.43697 1.06815 1.04622 1.61033 1.19624 1.00882 0.86222 1.41263 0.90760 1.26198 0.96882 1.03071 0.93910 1.70001 1.18599 1.31337 1.32785 0.84986 0.78017 0.76275 0.78997 1.20074 1.19085 1.19078 1.18784 0.87030 0.84701 0.83783 1.90541 1.15742 1.87860 1.58124 1.20067 0.97126 0.94509 1.02006 1.21572 0.98700 0.91798 0.95900 1.21501 0.95027 0.97660 0.99492 1.22084 0.94567 0.97827 0.92629 1.21255 1.00709 0.96175 1.05491 1.85855 1.08830 1.93089 1.08660 1.22030 0.92128 0.98027 0.95764 0.92036 0.93146 0.92105 0.91248 0.85375 0.80812 0.81105 0.95422 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.61 7.09 127.77 0.91 6.52 15 2 N -0.45 -24.17 3.01 -662.30 -1.99 -26.16 15 3 C -0.35 -20.52 9.26 84.10 0.78 -19.74 15 4 H 0.07 4.59 7.40 -2.91 -0.02 4.57 15 5 C 0.00 0.13 5.15 84.96 0.44 0.57 15 6 N -0.89 -47.20 10.69 21.68 0.23 -46.97 15 7 Si 0.99 42.51 29.57 68.60 2.03 44.54 15 8 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 9 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 11 C 0.47 24.64 7.31 86.76 0.63 25.28 15 12 O -0.63 -37.98 16.53 -3.99 -0.07 -38.04 15 13 C -0.13 -5.39 5.16 -20.11 -0.10 -5.50 15 14 C -0.06 -1.98 9.61 22.56 0.22 -1.77 15 15 C -0.12 -2.68 10.02 22.21 0.22 -2.46 15 16 C -0.05 -1.12 9.78 22.47 0.22 -0.90 15 17 C -0.12 -3.53 6.11 22.58 0.14 -3.39 15 18 S -0.12 -3.00 25.77 -56.49 -1.46 -4.46 15 19 C -0.06 -2.10 7.34 22.69 0.17 -1.93 15 20 H 0.06 2.48 5.74 -2.39 -0.01 2.47 15 21 H 0.05 2.42 7.41 -2.39 -0.02 2.40 15 22 H 0.06 2.90 6.22 -2.39 -0.01 2.88 15 23 H 0.28 13.70 8.31 -92.71 -0.77 12.93 15 24 H 0.13 4.25 8.00 -2.91 -0.02 4.22 15 25 H 0.17 2.47 8.06 -2.91 -0.02 2.45 15 26 H 0.17 2.49 8.06 -2.91 -0.02 2.47 15 27 H 0.08 1.86 9.07 73.35 0.67 2.53 15 28 H 0.13 5.06 5.54 -2.91 -0.02 5.05 15 Total: -1.00 -68.10 257.52 4.23 -63.88 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 1.86 Total: 10.55 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 3.62 Total: -3.33 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.76 Total: -73.13 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.07 Total: -38.04 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -1.46 Total: -4.46 kcal Total: -68.10 4.23 -63.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186149749.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.265 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds