Wall clock time and date at job start Sun Mar 29 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.88704 * 2 1 4 4 C 1.54917 * 111.00221 * 236.11908 * 2 1 3 5 5 N 1.47422 * 104.83074 * 204.87784 * 4 2 1 6 6 S 1.65599 * 125.64710 * 204.09161 * 5 4 2 7 7 O 1.42104 * 106.40434 * 203.54297 * 6 5 4 8 8 O 1.42106 * 106.40262 * 336.46480 * 6 5 4 9 9 C 1.76204 * 107.21794 * 90.00112 * 6 5 4 10 10 H 1.08004 * 119.99566 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99984 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00337 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 119.99787 * 180.02562 * 11 9 6 14 14 H 1.48493 * 109.47341 * 60.00303 * 13 11 9 15 15 H 1.48500 * 109.46875 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47057 * 299.99984 * 13 11 9 17 17 C 1.47020 * 108.70191 * 24.12901 * 5 4 2 18 18 C 1.54316 * 107.27568 * 358.94070 * 17 5 4 19 19 H 1.09003 * 110.72312 * 219.44382 * 18 17 5 20 20 F 1.39895 * 110.87367 * 96.23863 * 18 17 5 21 21 H 1.08995 * 109.47758 * 183.88095 * 1 2 3 22 22 H 1.09000 * 109.47186 * 303.87987 * 1 2 3 23 23 H 1.09008 * 109.47286 * 63.87769 * 1 2 3 24 24 H 1.08998 * 110.36726 * 323.71797 * 4 2 1 25 25 H 1.09005 * 110.36534 * 86.04318 * 4 2 1 26 26 H 0.96994 * 120.00544 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.88493 * 239.51822 * 17 5 4 28 28 H 1.09005 * 110.00581 * 118.43132 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4274 -1.2420 -0.7742 6 16 4.6811 -1.6327 -1.7831 7 8 5.5402 -2.4889 -1.0428 8 8 4.0969 -2.0024 -3.0247 9 6 5.5904 -0.1532 -2.0822 10 1 5.2774 0.7744 -1.6260 11 6 6.7019 -0.1801 -2.8975 12 7 7.0832 -1.3097 -3.4525 13 14 7.6662 1.3882 -3.2139 14 1 8.1785 1.9225 -1.9267 15 1 8.8073 1.0938 -4.1174 16 1 6.7789 2.3951 -3.8499 17 6 3.4682 -1.2733 0.6951 18 6 2.0870 -0.8078 1.2019 19 1 2.1930 -0.1699 2.0794 20 9 1.2648 -1.9037 1.4853 21 1 -0.3634 -1.0252 0.0696 22 1 -0.3633 0.5729 0.8532 23 1 -0.3634 0.4525 -0.9228 24 1 1.4522 -1.6702 -1.4027 25 1 2.1553 -0.1714 -2.0840 26 1 7.8649 -1.3286 -4.0264 27 1 4.2432 -0.5986 1.0588 28 1 3.6677 -2.2875 1.0411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951615.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:01 Heat of formation + Delta-G solvation = -145.977286 kcal Electronic energy + Delta-G solvation = -15687.259668 eV Core-core repulsion = 12778.763206 eV Total energy + Delta-G solvation = -2908.496462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.49600 -37.69380 -35.25775 -33.98021 -33.12132 -32.08260 -28.82287 -26.15442 -25.74902 -22.01309 -20.17351 -18.80142 -17.53462 -16.78513 -16.14927 -15.25208 -15.21598 -14.71163 -14.29059 -13.95918 -13.51686 -13.39431 -12.47959 -12.41332 -12.17464 -12.02035 -11.84976 -11.24944 -11.21903 -11.12389 -10.66626 -10.64186 -10.36274 -10.30796 -10.22926 -10.19590 -9.26014 -8.96741 -8.22858 -6.71460 -5.34586 2.18312 3.06805 3.11326 3.16536 4.03353 4.35061 4.39820 4.62143 4.74207 4.87678 4.96058 5.30020 5.49539 5.54948 5.71248 5.84252 5.87620 5.96967 6.06905 6.10677 6.23497 6.31944 6.43904 6.79533 7.30755 7.40341 7.94544 8.86362 10.22230 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.038928 B = 0.008517 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.099603 B = 3286.868087 C = 3501.198732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 H 0.100 0.900 4 C 0.128 3.872 5 N -1.021 6.021 6 S 2.727 3.273 7 O -1.000 7.000 8 O -0.999 6.999 9 C -1.020 5.020 10 H 0.102 0.898 11 C 0.132 3.868 12 N -0.846 5.846 13 Si 0.922 3.078 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.264 1.264 17 C 0.101 3.899 18 C 0.081 3.919 19 H 0.099 0.901 20 F -0.205 7.205 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.292 0.708 27 H 0.079 0.921 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 5.207 7.317 12.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 H 0.118 0.882 4 C 0.002 3.998 5 N -0.856 5.856 6 S 2.829 3.171 7 O -0.991 6.991 8 O -0.989 6.989 9 C -1.154 5.154 10 H 0.120 0.880 11 C -0.086 4.086 12 N -0.475 5.475 13 Si 0.746 3.254 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.189 1.189 17 C -0.026 4.026 18 C 0.044 3.956 19 H 0.117 0.883 20 F -0.186 7.186 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.718 4.136 6.820 11.817 hybrid contribution 0.679 1.384 -0.097 1.545 sum -8.039 5.520 6.723 11.845 Atomic orbital electron populations 1.21647 0.93489 1.02846 1.02018 1.23003 0.96856 1.00197 0.94910 0.88204 1.21886 0.83694 0.97572 0.96622 1.59231 1.25686 1.85584 1.15098 1.00211 0.70520 0.75494 0.70887 1.93359 1.64736 1.67747 1.73216 1.93364 1.78400 1.84546 1.42621 1.30574 1.25697 1.16932 1.42175 0.87996 1.24765 0.94885 0.98072 0.90866 1.69883 1.24789 1.26528 1.26327 0.86175 0.78806 0.81391 0.79008 1.18867 1.20087 1.18865 1.22108 0.95909 1.02537 0.82015 1.22595 0.89192 0.85128 0.98688 0.88315 1.92784 1.74238 1.56791 1.94810 0.91649 0.92401 0.91857 0.91889 0.90203 0.89762 0.90230 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.09 37.16 0.34 -1.18 15 2 C -0.13 -1.68 3.59 -88.47 -0.32 -2.00 15 3 H 0.10 1.16 8.14 -51.93 -0.42 0.74 15 4 C 0.13 2.21 6.45 -2.53 -0.02 2.19 15 5 N -1.02 -21.15 3.70 -111.42 -0.41 -21.56 15 6 S 2.73 73.57 5.22 -107.50 -0.56 73.01 15 7 O -1.00 -29.63 17.60 -57.17 -1.01 -30.63 15 8 O -1.00 -29.57 17.60 -57.17 -1.01 -30.58 15 9 C -1.02 -28.02 9.75 30.60 0.30 -27.73 15 10 H 0.10 2.54 7.81 -52.48 -0.41 2.13 15 11 C 0.13 3.68 5.46 -17.82 -0.10 3.59 15 12 N -0.85 -24.93 13.19 55.43 0.73 -24.20 15 13 Si 0.92 20.44 29.54 -169.99 -5.02 15.42 15 14 H -0.26 -5.64 7.11 56.52 0.40 -5.23 15 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 16 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 17 C 0.10 1.72 6.81 -3.07 -0.02 1.70 15 18 C 0.08 1.09 4.48 -24.90 -0.11 0.98 15 19 H 0.10 0.99 8.14 -51.93 -0.42 0.57 15 20 F -0.21 -3.05 15.96 2.25 0.04 -3.01 15 21 H 0.06 0.75 7.34 -51.93 -0.38 0.36 15 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 23 H 0.06 0.61 8.14 -51.92 -0.42 0.19 15 24 H 0.06 1.06 8.04 -51.93 -0.42 0.64 15 25 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 26 H 0.29 7.73 8.31 -40.82 -0.34 7.39 15 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.08 1.33 8.12 -51.93 -0.42 0.91 15 LS Contribution 258.22 15.07 3.89 3.89 Total: -1.00 -34.67 258.22 -6.58 -41.25 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -3.30 Total: -1.13 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 0.07 Total: -22.45 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.32 Total: -45.76 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -2.01 Total: -61.21 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 73.57 SS G_CDS: -0.56 Total: 73.01 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -34.67 -6.58 -41.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951615.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.728 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds