Wall clock time and date at job start Sun Mar 29 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.88704 * 2 1 4 4 C 1.54917 * 111.00221 * 236.11908 * 2 1 3 5 5 N 1.47422 * 104.83074 * 204.87784 * 4 2 1 6 6 S 1.65599 * 125.64710 * 204.09161 * 5 4 2 7 7 O 1.42104 * 106.40434 * 203.54297 * 6 5 4 8 8 O 1.42106 * 106.40262 * 336.46480 * 6 5 4 9 9 C 1.76204 * 107.21794 * 90.00112 * 6 5 4 10 10 H 1.08004 * 119.99566 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99984 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00337 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 119.99787 * 180.02562 * 11 9 6 14 14 H 1.48493 * 109.47341 * 60.00303 * 13 11 9 15 15 H 1.48500 * 109.46875 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47057 * 299.99984 * 13 11 9 17 17 C 1.47020 * 108.70191 * 24.12901 * 5 4 2 18 18 C 1.54316 * 107.27568 * 358.94070 * 17 5 4 19 19 H 1.09003 * 110.72312 * 219.44382 * 18 17 5 20 20 F 1.39895 * 110.87367 * 96.23863 * 18 17 5 21 21 H 1.08995 * 109.47758 * 183.88095 * 1 2 3 22 22 H 1.09000 * 109.47186 * 303.87987 * 1 2 3 23 23 H 1.09008 * 109.47286 * 63.87769 * 1 2 3 24 24 H 1.08998 * 110.36726 * 323.71797 * 4 2 1 25 25 H 1.09005 * 110.36534 * 86.04318 * 4 2 1 26 26 H 0.96994 * 120.00544 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.88493 * 239.51822 * 17 5 4 28 28 H 1.09005 * 110.00581 * 118.43132 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4274 -1.2420 -0.7742 6 16 4.6811 -1.6327 -1.7831 7 8 5.5402 -2.4889 -1.0428 8 8 4.0969 -2.0024 -3.0247 9 6 5.5904 -0.1532 -2.0822 10 1 5.2774 0.7744 -1.6260 11 6 6.7019 -0.1801 -2.8975 12 7 7.0832 -1.3097 -3.4525 13 14 7.6662 1.3882 -3.2139 14 1 8.1785 1.9225 -1.9267 15 1 8.8073 1.0938 -4.1174 16 1 6.7789 2.3951 -3.8499 17 6 3.4682 -1.2733 0.6951 18 6 2.0870 -0.8078 1.2019 19 1 2.1930 -0.1699 2.0794 20 9 1.2648 -1.9037 1.4853 21 1 -0.3634 -1.0252 0.0696 22 1 -0.3633 0.5729 0.8532 23 1 -0.3634 0.4525 -0.9228 24 1 1.4522 -1.6702 -1.4027 25 1 2.1553 -0.1714 -2.0840 26 1 7.8649 -1.3286 -4.0264 27 1 4.2432 -0.5986 1.0588 28 1 3.6677 -2.2875 1.0411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951615.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:01 Heat of formation + Delta-G solvation = -173.014050 kcal Electronic energy + Delta-G solvation = -15688.432070 eV Core-core repulsion = 12778.763206 eV Total energy + Delta-G solvation = -2909.668864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.61007 -39.01441 -37.48561 -36.20817 -35.21488 -33.29094 -30.12287 -28.29007 -26.91102 -23.38369 -21.27842 -20.80574 -19.30346 -18.46942 -17.77252 -17.03351 -16.45133 -16.26091 -16.03307 -15.70485 -15.01697 -14.73147 -13.99703 -13.82772 -13.59138 -13.42267 -13.22194 -13.11379 -12.99856 -12.58810 -12.53661 -12.32743 -12.17046 -11.96016 -11.69656 -11.35229 -11.24825 -11.03331 -9.87445 -8.76534 -7.52204 0.19197 1.34048 1.36695 1.50074 2.19740 2.55742 2.80241 3.25095 3.40086 3.67238 3.78928 3.93306 4.24472 4.34094 4.37726 4.53488 4.57328 4.72090 4.86488 4.91765 5.12105 5.12684 5.22975 5.31873 5.48219 5.70577 5.88242 6.74803 8.18954 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.038928 B = 0.008517 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.099603 B = 3286.868087 C = 3501.198732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 H 0.123 0.877 4 C 0.112 3.888 5 N -1.024 6.024 6 S 2.729 3.271 7 O -1.041 7.041 8 O -1.040 7.040 9 C -1.036 5.036 10 H 0.124 0.876 11 C 0.067 3.933 12 N -0.896 5.896 13 Si 0.996 3.004 14 H -0.248 1.248 15 H -0.265 1.265 16 H -0.249 1.249 17 C 0.084 3.916 18 C 0.089 3.911 19 H 0.148 0.852 20 F -0.215 7.215 21 H 0.053 0.947 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.300 0.700 27 H 0.095 0.905 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.713 8.000 8.565 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 H 0.141 0.859 4 C -0.013 4.013 5 N -0.863 5.863 6 S 2.833 3.167 7 O -1.031 7.031 8 O -1.030 7.030 9 C -1.170 5.170 10 H 0.142 0.858 11 C -0.146 4.146 12 N -0.528 5.528 13 Si 0.814 3.186 14 H -0.171 1.171 15 H -0.190 1.190 16 H -0.172 1.172 17 C -0.041 4.041 18 C 0.052 3.948 19 H 0.165 0.835 20 F -0.196 7.196 21 H 0.072 0.928 22 H 0.102 0.898 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.404 6.903 8.076 14.188 hybrid contribution 0.809 0.455 -0.448 1.031 sum -8.594 7.358 7.629 13.645 Atomic orbital electron populations 1.21653 0.91440 1.02779 1.03744 1.23046 0.98344 1.00288 0.91998 0.85940 1.22240 0.81978 0.98188 0.98898 1.58650 1.25650 1.85511 1.16463 0.99678 0.70903 0.75636 0.70519 1.93294 1.66687 1.69305 1.73815 1.93298 1.79184 1.85394 1.45146 1.30887 1.26061 1.17598 1.42482 0.85790 1.26117 0.96079 1.02199 0.90182 1.69992 1.25918 1.29362 1.27502 0.85081 0.77469 0.76259 0.79827 1.17138 1.18956 1.17215 1.22496 0.99381 1.02566 0.79701 1.22775 0.86484 0.85000 1.00543 0.83474 1.92775 1.74258 1.57644 1.94890 0.92779 0.89805 0.90897 0.92442 0.90602 0.89025 0.88664 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.09 71.98 0.65 -1.83 15 2 C -0.12 -2.66 3.59 -9.40 -0.03 -2.70 15 3 H 0.12 2.30 8.14 -2.39 -0.02 2.28 15 4 C 0.11 3.78 6.45 86.86 0.56 4.34 15 5 N -1.02 -42.53 3.70 -506.43 -1.87 -44.40 15 6 S 2.73 151.45 5.22 -56.49 -0.29 151.16 15 7 O -1.04 -64.08 17.60 -128.00 -2.25 -66.33 15 8 O -1.04 -64.11 17.60 -128.00 -2.25 -66.37 15 9 C -1.04 -56.94 9.75 67.73 0.66 -56.28 15 10 H 0.12 6.01 7.81 -2.91 -0.02 5.99 15 11 C 0.07 3.72 5.46 84.65 0.46 4.18 15 12 N -0.90 -53.95 13.19 21.45 0.28 -53.67 15 13 Si 1.00 40.70 29.54 68.60 2.03 42.73 15 14 H -0.25 -9.41 7.11 99.48 0.71 -8.70 15 15 H -0.27 -10.25 7.11 99.48 0.71 -9.55 15 16 H -0.25 -9.46 7.11 99.48 0.71 -8.75 15 17 C 0.08 2.79 6.81 86.73 0.59 3.38 15 18 C 0.09 2.11 4.48 31.78 0.14 2.25 15 19 H 0.15 2.19 8.14 -2.39 -0.02 2.17 15 20 F -0.21 -5.91 15.96 44.97 0.72 -5.19 15 21 H 0.05 1.10 7.34 -2.39 -0.02 1.08 15 22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 15 23 H 0.07 1.18 8.14 -2.38 -0.02 1.16 15 24 H 0.06 1.96 8.04 -2.39 -0.02 1.94 15 25 H 0.08 2.57 8.14 -2.38 -0.02 2.55 15 26 H 0.30 16.18 8.31 -92.71 -0.77 15.41 15 27 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 28 H 0.06 2.18 8.12 -2.38 -0.02 2.16 15 Total: -1.00 -77.64 258.22 0.54 -77.09 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.15 Total: 11.63 kcal Atomic # 6 Polarization: -49.69 SS G_CDS: 3.04 Total: -46.66 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -1.59 Total: -98.07 kcal Atomic # 8 Polarization: -128.20 SS G_CDS: -4.51 Total: -132.70 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.72 Total: -5.19 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 151.45 SS G_CDS: -0.29 Total: 151.16 kcal Total: -77.64 0.54 -77.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951615.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.920 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds