Wall clock time and date at job start Sun Mar 29 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.41931 * 2 1 4 4 C 1.54918 * 110.36961 * 237.70876 * 2 1 3 5 5 C 1.55157 * 101.58155 * 204.15332 * 4 2 1 6 6 H 1.08996 * 110.71539 * 153.86247 * 5 4 2 7 7 F 1.39894 * 110.71872 * 277.13513 * 5 4 2 8 8 C 1.54325 * 102.94374 * 35.49936 * 5 4 2 9 9 N 1.47015 * 107.27065 * 337.80787 * 8 5 4 10 10 S 1.65604 * 125.64701 * 178.89824 * 9 8 5 11 11 O 1.42101 * 106.40136 * 203.56400 * 10 9 8 12 12 O 1.42095 * 106.39900 * 336.47935 * 10 9 8 13 13 C 1.76193 * 107.22091 * 90.02174 * 10 9 8 14 14 H 1.08009 * 119.99894 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00219 * 179.97438 * 13 10 9 16 16 N 1.31519 * 120.00136 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00265 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46924 * 90.00293 * 17 15 13 19 19 H 1.48495 * 109.47094 * 210.00388 * 17 15 13 20 20 H 1.48505 * 109.46975 * 330.00414 * 17 15 13 21 21 H 1.09007 * 109.47267 * 180.83580 * 1 2 3 22 22 H 1.09000 * 109.47395 * 300.83822 * 1 2 3 23 23 H 1.09002 * 109.47536 * 60.84032 * 1 2 3 24 24 H 1.09001 * 111.00522 * 86.07391 * 4 2 1 25 25 H 1.09000 * 110.99891 * 322.22420 * 4 2 1 26 26 H 1.09000 * 109.88274 * 97.22627 * 8 5 4 27 27 H 1.08998 * 109.88226 * 218.38672 * 8 5 4 28 28 H 0.96995 * 120.00024 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7759 -1.2277 5 6 3.4778 -1.1997 -0.7342 6 1 3.8104 -2.1023 -1.2468 7 9 4.3976 -0.1607 -0.9113 8 6 3.2493 -1.4769 0.7667 9 7 2.0431 -0.7385 1.1682 10 16 1.3713 -0.7375 2.6819 11 8 0.0027 -0.3942 2.5132 12 8 1.7997 -1.9370 3.3117 13 6 2.1096 0.5869 3.5793 14 1 2.8543 1.2104 3.1068 15 6 1.7359 0.8281 4.8843 16 7 0.8287 0.0693 5.4596 17 14 2.5191 2.2318 5.8360 18 1 1.7208 3.4686 5.6404 19 1 2.5567 1.8901 7.2806 20 1 3.9026 2.4526 5.3434 21 1 -0.3634 -1.0276 0.0150 22 1 -0.3634 0.5268 0.8824 23 1 -0.3634 0.5007 -0.8974 24 1 2.1398 -0.1263 -2.1002 25 1 1.4511 -1.6480 -1.4409 26 1 3.1013 -2.5446 0.9282 27 1 4.1064 -1.1281 1.3427 28 1 0.5661 0.2387 6.3778 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952150.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:58 Heat of formation + Delta-G solvation = -140.102594 kcal Electronic energy + Delta-G solvation = -15913.346124 eV Core-core repulsion = 13005.104408 eV Total energy + Delta-G solvation = -2908.241716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.44418 -37.79476 -35.34627 -33.99610 -33.08379 -30.75145 -29.98323 -26.12163 -25.30909 -21.55711 -20.80595 -18.72970 -17.16024 -16.60711 -16.29156 -15.32280 -14.92992 -14.82326 -14.21718 -13.95865 -13.55286 -13.13721 -12.53070 -12.32244 -12.00893 -11.96720 -11.46796 -11.25155 -11.21266 -11.06077 -10.67801 -10.59635 -10.44590 -10.30871 -10.23856 -9.52345 -9.24159 -8.92641 -8.21208 -6.69971 -5.31856 2.20747 3.07196 3.13732 3.21108 4.05662 4.36150 4.46358 4.64530 4.75879 4.95526 5.03466 5.42895 5.58011 5.75173 5.81866 5.86543 5.91398 6.07826 6.11039 6.28213 6.34050 6.59732 6.84422 7.15153 7.33535 7.46560 7.99280 8.89316 10.23434 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.009926 C = 0.009019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.457097 B = 2820.171999 C = 3103.800248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.150 3.850 3 H 0.071 0.929 4 C -0.152 4.152 5 C 0.078 3.922 6 H 0.099 0.901 7 F -0.207 7.207 8 C 0.101 3.899 9 N -1.017 6.017 10 S 2.729 3.271 11 O -0.993 6.993 12 O -1.003 7.003 13 C -1.021 5.021 14 H 0.102 0.898 15 C 0.133 3.867 16 N -0.847 5.847 17 Si 0.920 3.080 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.262 1.262 21 H 0.056 0.944 22 H 0.107 0.893 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -0.486 -10.837 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.043 3.957 3 H 0.089 0.911 4 C -0.191 4.191 5 C 0.040 3.960 6 H 0.116 0.884 7 F -0.188 7.188 8 C -0.026 4.026 9 N -0.853 5.853 10 S 2.831 3.169 11 O -0.983 6.983 12 O -0.993 6.993 13 C -1.154 5.154 14 H 0.120 0.880 15 C -0.084 4.084 16 N -0.477 5.477 17 Si 0.744 3.256 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.187 1.187 21 H 0.075 0.925 22 H 0.125 0.875 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.505 -1.155 -10.311 10.673 hybrid contribution 0.934 1.265 0.586 1.678 sum 3.439 0.110 -9.724 10.315 Atomic orbital electron populations 1.22535 0.93500 1.03490 1.04174 1.21499 0.94936 0.95222 0.83999 0.91057 1.23494 0.95065 1.01872 0.98678 1.22571 0.88055 0.88200 0.97160 0.88356 1.92814 1.68242 1.61370 1.96399 1.22103 0.89397 0.97593 0.93488 1.59249 1.38600 1.60713 1.26718 1.00118 0.72942 0.74957 0.68875 1.93315 1.34551 1.85670 1.84789 1.93351 1.83403 1.49364 1.73202 1.30635 1.38635 1.36408 1.09737 0.88013 1.24747 0.91762 0.95774 0.96164 1.69890 1.26206 1.36207 1.15367 0.86171 0.80323 0.80785 0.78351 1.19142 1.19940 1.18650 0.92457 0.87467 0.92733 0.89469 0.89114 0.90225 0.90654 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.15 37.15 0.30 -2.81 15 2 C 0.15 2.58 3.87 -66.42 -0.26 2.32 15 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 4 C -0.15 -1.96 6.30 -24.58 -0.15 -2.12 15 5 C 0.08 1.04 4.76 -24.90 -0.12 0.92 15 6 H 0.10 0.98 8.14 -51.93 -0.42 0.55 15 7 F -0.21 -3.17 17.19 2.25 0.04 -3.13 15 8 C 0.10 1.73 6.80 -3.07 -0.02 1.71 15 9 N -1.02 -20.93 3.58 -104.45 -0.37 -21.31 15 10 S 2.73 72.40 5.18 -107.50 -0.56 71.84 15 11 O -0.99 -27.71 14.03 -57.17 -0.80 -28.52 15 12 O -1.00 -29.35 17.60 -57.17 -1.01 -30.36 15 13 C -1.02 -28.52 9.74 30.60 0.30 -28.22 15 14 H 0.10 2.66 7.81 -52.48 -0.41 2.25 15 15 C 0.13 3.75 5.46 -17.82 -0.10 3.65 15 16 N -0.85 -24.94 13.19 55.43 0.73 -24.21 15 17 Si 0.92 20.84 29.54 -169.99 -5.02 15.82 15 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 20 H -0.26 -5.79 7.11 56.52 0.40 -5.38 15 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.11 2.24 5.69 -51.93 -0.30 1.94 15 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.09 1.04 8.06 -51.93 -0.42 0.62 15 26 H 0.08 1.27 8.14 -51.93 -0.42 0.84 15 27 H 0.08 1.31 8.11 -51.93 -0.42 0.89 15 28 H 0.29 7.69 8.31 -40.82 -0.34 7.35 15 LS Contribution 253.57 15.07 3.82 3.82 Total: -1.00 -33.81 253.57 -6.43 -40.24 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.22 Total: 0.34 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -0.05 Total: -24.54 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.36 Total: -45.52 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -1.81 Total: -58.88 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 72.40 SS G_CDS: -0.56 Total: 71.84 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.81 -6.43 -40.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952150.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.858 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds