Wall clock time and date at job start Sun Mar 29 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.41931 * 2 1 4 4 C 1.54918 * 110.36961 * 237.70876 * 2 1 3 5 5 C 1.55157 * 101.58155 * 204.15332 * 4 2 1 6 6 H 1.08996 * 110.71539 * 153.86247 * 5 4 2 7 7 F 1.39894 * 110.71872 * 277.13513 * 5 4 2 8 8 C 1.54325 * 102.94374 * 35.49936 * 5 4 2 9 9 N 1.47015 * 107.27065 * 337.80787 * 8 5 4 10 10 S 1.65604 * 125.64701 * 178.89824 * 9 8 5 11 11 O 1.42101 * 106.40136 * 203.56400 * 10 9 8 12 12 O 1.42095 * 106.39900 * 336.47935 * 10 9 8 13 13 C 1.76193 * 107.22091 * 90.02174 * 10 9 8 14 14 H 1.08009 * 119.99894 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00219 * 179.97438 * 13 10 9 16 16 N 1.31519 * 120.00136 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00265 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46924 * 90.00293 * 17 15 13 19 19 H 1.48495 * 109.47094 * 210.00388 * 17 15 13 20 20 H 1.48505 * 109.46975 * 330.00414 * 17 15 13 21 21 H 1.09007 * 109.47267 * 180.83580 * 1 2 3 22 22 H 1.09000 * 109.47395 * 300.83822 * 1 2 3 23 23 H 1.09002 * 109.47536 * 60.84032 * 1 2 3 24 24 H 1.09001 * 111.00522 * 86.07391 * 4 2 1 25 25 H 1.09000 * 110.99891 * 322.22420 * 4 2 1 26 26 H 1.09000 * 109.88274 * 97.22627 * 8 5 4 27 27 H 1.08998 * 109.88226 * 218.38672 * 8 5 4 28 28 H 0.96995 * 120.00024 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0692 -0.7759 -1.2277 5 6 3.4778 -1.1997 -0.7342 6 1 3.8104 -2.1023 -1.2468 7 9 4.3976 -0.1607 -0.9113 8 6 3.2493 -1.4769 0.7667 9 7 2.0431 -0.7385 1.1682 10 16 1.3713 -0.7375 2.6819 11 8 0.0027 -0.3942 2.5132 12 8 1.7997 -1.9370 3.3117 13 6 2.1096 0.5869 3.5793 14 1 2.8543 1.2104 3.1068 15 6 1.7359 0.8281 4.8843 16 7 0.8287 0.0693 5.4596 17 14 2.5191 2.2318 5.8360 18 1 1.7208 3.4686 5.6404 19 1 2.5567 1.8901 7.2806 20 1 3.9026 2.4526 5.3434 21 1 -0.3634 -1.0276 0.0150 22 1 -0.3634 0.5268 0.8824 23 1 -0.3634 0.5007 -0.8974 24 1 2.1398 -0.1263 -2.1002 25 1 1.4511 -1.6480 -1.4409 26 1 3.1013 -2.5446 0.9282 27 1 4.1064 -1.1281 1.3427 28 1 0.5661 0.2387 6.3778 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952150.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:58 Heat of formation + Delta-G solvation = -166.077244 kcal Electronic energy + Delta-G solvation = -15914.472470 eV Core-core repulsion = 13005.104408 eV Total energy + Delta-G solvation = -2909.368061 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.56045 -39.15551 -37.48337 -36.16031 -35.21008 -32.13558 -31.28429 -28.28090 -26.62869 -22.96062 -22.03361 -20.75752 -19.01576 -18.19603 -17.78508 -17.12205 -16.46776 -16.07452 -15.92374 -15.76334 -15.07064 -14.73040 -14.06848 -13.88818 -13.77759 -13.30679 -13.25826 -13.04719 -12.76651 -12.47482 -12.41766 -12.33469 -12.23877 -11.90076 -11.66659 -11.29154 -11.16270 -10.97297 -9.83659 -8.77926 -7.52039 0.25456 1.29906 1.30301 1.46614 2.17416 2.53425 2.80222 3.31458 3.47895 3.71523 3.81830 3.99081 4.22811 4.33948 4.40202 4.43810 4.63998 4.80372 4.85976 4.93427 5.13661 5.16700 5.26897 5.38948 5.65639 5.82025 5.87615 6.74716 8.16968 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.032458 B = 0.009926 C = 0.009019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.457097 B = 2820.171999 C = 3103.800248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.134 3.866 3 H 0.070 0.930 4 C -0.137 4.137 5 C 0.087 3.913 6 H 0.147 0.853 7 F -0.218 7.218 8 C 0.083 3.917 9 N -1.021 6.021 10 S 2.736 3.264 11 O -1.018 7.018 12 O -1.042 7.042 13 C -1.048 5.048 14 H 0.110 0.890 15 C 0.072 3.928 16 N -0.892 5.892 17 Si 0.987 3.013 18 H -0.252 1.252 19 H -0.259 1.259 20 H -0.253 1.253 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 0.163 -12.603 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.029 3.971 3 H 0.088 0.912 4 C -0.176 4.176 5 C 0.050 3.950 6 H 0.164 0.836 7 F -0.199 7.199 8 C -0.043 4.043 9 N -0.860 5.860 10 S 2.839 3.161 11 O -1.009 7.009 12 O -1.032 7.032 13 C -1.181 5.181 14 H 0.128 0.872 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.805 3.195 18 H -0.176 1.176 19 H -0.183 1.183 20 H -0.176 1.176 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.113 0.887 24 H 0.136 0.864 25 H 0.130 0.870 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.585 -0.513 -12.082 12.613 hybrid contribution 0.590 1.041 1.051 1.593 sum 4.176 0.527 -11.031 11.806 Atomic orbital electron populations 1.22458 0.93937 1.03042 1.04128 1.21868 0.94808 0.95754 0.84711 0.91213 1.23512 0.94378 1.02587 0.97148 1.22733 0.88397 0.89612 0.94299 0.83559 1.92802 1.68692 1.62185 1.96193 1.22481 0.87496 0.97711 0.96590 1.58751 1.39875 1.61537 1.25847 0.99493 0.72617 0.74106 0.69871 1.93298 1.36118 1.85729 1.85714 1.93287 1.83921 1.50754 1.75263 1.31047 1.39095 1.37094 1.10838 0.87225 1.25976 0.92082 0.98711 0.97318 1.69968 1.27775 1.38278 1.16323 0.85182 0.79701 0.77251 0.77389 1.17608 1.18269 1.17609 0.92924 0.91640 0.88725 0.86361 0.87027 0.89332 0.91767 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.02 8.15 71.98 0.59 -5.44 15 2 C 0.13 4.40 3.87 45.47 0.18 4.58 15 3 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 4 C -0.14 -2.99 6.30 31.99 0.20 -2.79 15 5 C 0.09 2.01 4.76 31.78 0.15 2.16 15 6 H 0.15 2.12 8.14 -2.39 -0.02 2.10 15 7 F -0.22 -5.97 17.19 44.97 0.77 -5.20 15 8 C 0.08 2.74 6.80 86.73 0.59 3.33 15 9 N -1.02 -41.88 3.58 -484.38 -1.74 -43.62 15 10 S 2.74 149.61 5.18 -56.49 -0.29 149.31 15 11 O -1.02 -59.11 14.03 -128.00 -1.80 -60.91 15 12 O -1.04 -63.18 17.60 -128.00 -2.25 -65.43 15 13 C -1.05 -59.82 9.74 67.73 0.66 -59.15 15 14 H 0.11 5.83 7.81 -2.91 -0.02 5.81 15 15 C 0.07 4.10 5.46 84.65 0.46 4.57 15 16 N -0.89 -53.86 13.19 21.45 0.28 -53.58 15 17 Si 0.99 42.36 29.54 68.60 2.03 44.39 15 18 H -0.25 -10.16 7.11 99.48 0.71 -9.45 15 19 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 20 H -0.25 -10.33 7.11 99.48 0.71 -9.62 15 21 H 0.05 1.79 8.14 -2.38 -0.02 1.77 15 22 H 0.06 2.80 5.69 -2.39 -0.01 2.79 15 23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.12 1.93 8.14 -2.39 -0.02 1.91 15 25 H 0.11 2.02 8.06 -2.39 -0.02 2.00 15 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 27 H 0.06 2.22 8.11 -2.39 -0.02 2.20 15 28 H 0.30 16.19 8.31 -92.71 -0.77 15.42 15 Total: -1.00 -76.13 253.57 0.99 -75.13 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.16 Total: 12.63 kcal Atomic # 6 Polarization: -55.56 SS G_CDS: 2.83 Total: -52.74 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -1.45 Total: -97.20 kcal Atomic # 8 Polarization: -122.29 SS G_CDS: -4.05 Total: -126.34 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.77 Total: -5.20 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 149.61 SS G_CDS: -0.29 Total: 149.31 kcal Total: -76.13 0.99 -75.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952150.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.943 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds