Wall clock time and date at job start Sun Mar 29 2020 22:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99891 * 2 1 4 4 C 1.54330 * 109.88292 * 238.90375 * 2 1 3 5 5 C 1.55155 * 102.94292 * 218.39370 * 4 2 1 6 6 H 1.09001 * 111.00015 * 277.42463 * 5 4 2 7 7 F 1.39894 * 111.00451 * 153.57499 * 5 4 2 8 8 C 1.54907 * 101.58383 * 35.49718 * 5 4 2 9 9 N 1.47026 * 109.88297 * 121.09824 * 2 1 3 10 10 S 1.65594 * 125.64396 * 298.31770 * 9 2 1 11 11 O 1.42104 * 106.40319 * 203.53901 * 10 9 2 12 12 O 1.42096 * 106.40689 * 336.46278 * 10 9 2 13 13 C 1.76205 * 107.21904 * 90.00201 * 10 9 2 14 14 H 1.08001 * 119.99624 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00285 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99999 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99899 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47355 * 59.99932 * 17 15 13 19 19 H 1.48495 * 109.46804 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47015 * 299.99879 * 17 15 13 21 21 H 1.09000 * 109.46935 * 298.90803 * 1 2 3 22 22 H 1.09003 * 109.47043 * 58.90228 * 1 2 3 23 23 H 1.08995 * 109.47287 * 178.90391 * 1 2 3 24 24 H 1.08998 * 110.71700 * 336.75297 * 4 2 1 25 25 H 1.08991 * 110.72004 * 100.02588 * 4 2 1 26 26 H 1.08997 * 110.36783 * 204.15179 * 8 5 4 27 27 H 1.08997 * 110.45914 * 81.87830 * 8 5 4 28 28 H 0.96994 * 119.99802 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2428 5 6 3.2876 -1.5143 -0.6924 6 1 4.1654 -0.8689 -0.6604 7 9 3.5411 -2.6653 -1.4461 8 6 2.8145 -1.8794 0.7368 9 7 2.0301 -0.7141 1.1839 10 16 1.7580 -0.2806 2.7587 11 8 2.8130 -0.8518 3.5203 12 8 1.4724 1.1114 2.7482 13 6 0.2789 -1.0880 3.2740 14 1 -0.2569 -1.7243 2.5852 15 6 -0.1943 -0.9074 4.5563 16 7 0.4580 -0.1322 5.3949 17 14 -1.7619 -1.7640 5.1026 18 1 -1.5883 -3.2343 4.9880 19 1 -2.0541 -1.4082 6.5144 20 1 -2.8897 -1.3299 4.2396 21 1 -0.3633 0.4968 0.8996 22 1 -0.3633 0.5308 -0.8800 23 1 -0.3633 -1.0274 -0.0197 24 1 1.3052 -1.4459 -1.6182 25 1 2.3529 -0.0461 -2.0200 26 1 3.6716 -2.0339 1.3922 27 1 2.1891 -2.7718 0.7147 28 1 0.1252 -0.0056 6.2971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952152.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:00 Heat of formation + Delta-G solvation = -146.127196 kcal Electronic energy + Delta-G solvation = -15826.562424 eV Core-core repulsion = 12918.059461 eV Total energy + Delta-G solvation = -2908.502962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.49382 -38.02080 -35.31591 -34.01094 -33.11510 -30.80411 -29.93126 -26.16783 -25.37084 -21.55404 -20.90335 -18.56072 -17.64458 -16.65587 -16.30340 -15.26799 -14.76925 -14.67394 -14.33079 -14.01325 -13.70548 -13.09334 -12.85776 -12.23052 -12.12827 -11.98659 -11.79415 -11.23110 -11.20190 -10.81061 -10.67616 -10.63382 -10.42325 -10.33325 -10.27340 -10.14888 -9.25774 -8.97656 -8.27800 -6.71934 -5.34085 2.15241 3.07256 3.11660 3.17106 4.02595 4.31481 4.49649 4.63101 4.70370 4.90447 4.96228 5.40184 5.63442 5.69608 5.76501 5.78724 5.85739 6.02721 6.07977 6.20964 6.31430 6.45351 6.73745 6.82498 7.30962 7.39788 7.95804 8.86715 10.21876 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.035374 B = 0.009125 C = 0.008863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.355086 B = 3067.755342 C = 3158.599732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.153 3.847 3 H 0.078 0.922 4 C -0.148 4.148 5 C 0.076 3.924 6 H 0.099 0.901 7 F -0.208 7.208 8 C 0.101 3.899 9 N -1.016 6.016 10 S 2.727 3.273 11 O -1.001 7.001 12 O -0.997 6.997 13 C -1.017 5.017 14 H 0.103 0.897 15 C 0.133 3.867 16 N -0.847 5.847 17 Si 0.921 3.079 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.264 1.264 21 H 0.076 0.924 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -1.994 -10.821 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.046 3.954 3 H 0.096 0.904 4 C -0.187 4.187 5 C 0.038 3.962 6 H 0.117 0.883 7 F -0.189 7.189 8 C -0.026 4.026 9 N -0.851 5.851 10 S 2.829 3.171 11 O -0.992 6.992 12 O -0.988 6.988 13 C -1.151 5.151 14 H 0.121 0.879 15 C -0.085 4.085 16 N -0.476 5.476 17 Si 0.745 3.255 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.188 1.188 21 H 0.095 0.905 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.427 -1.313 -10.076 10.261 hybrid contribution -1.351 -0.918 0.209 1.646 sum 0.077 -2.231 -9.867 10.116 Atomic orbital electron populations 1.22312 0.94884 1.02744 1.03211 1.21072 0.94542 0.95828 0.83965 0.90410 1.23308 0.97346 1.00114 0.97972 1.22792 0.99103 0.83694 0.90615 0.88286 1.92782 1.95655 1.52656 1.77770 1.22273 0.96412 0.90020 0.93939 1.59274 1.65783 1.37040 1.23000 1.00212 0.75422 0.73424 0.68060 1.93358 1.59018 1.79958 1.66862 1.93359 1.86927 1.33760 1.84759 1.30571 1.32073 1.45817 1.06625 0.87905 1.24754 0.97678 0.91646 0.94424 1.69881 1.38484 1.31765 1.07509 0.86194 0.81097 0.80284 0.77946 1.18859 1.20111 1.18839 0.90489 0.91955 0.91975 0.89465 0.89681 0.89297 0.90974 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.19 37.16 0.34 -2.44 15 2 C 0.15 2.51 3.45 -66.95 -0.23 2.28 15 3 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 4 C -0.15 -1.88 6.29 -24.89 -0.16 -2.04 15 5 C 0.08 1.04 4.86 -24.58 -0.12 0.92 15 6 H 0.10 1.19 8.14 -51.93 -0.42 0.77 15 7 F -0.21 -2.95 17.24 2.25 0.04 -2.91 15 8 C 0.10 1.71 6.91 -2.53 -0.02 1.70 15 9 N -1.02 -20.42 3.40 -104.42 -0.35 -20.78 15 10 S 2.73 72.09 4.78 -107.50 -0.51 71.58 15 11 O -1.00 -29.21 17.34 -57.17 -0.99 -30.20 15 12 O -1.00 -28.63 17.42 -57.17 -1.00 -29.62 15 13 C -1.02 -27.67 9.75 30.60 0.30 -27.37 15 14 H 0.10 2.56 7.81 -52.49 -0.41 2.15 15 15 C 0.13 3.68 5.46 -17.82 -0.10 3.58 15 16 N -0.85 -24.76 13.19 55.43 0.73 -24.03 15 17 Si 0.92 20.45 29.54 -169.99 -5.02 15.43 15 18 H -0.26 -5.69 7.11 56.52 0.40 -5.29 15 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 20 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 21 H 0.08 1.47 7.74 -51.93 -0.40 1.07 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.06 0.96 8.13 -51.93 -0.42 0.54 15 24 H 0.09 1.04 7.84 -51.93 -0.41 0.64 15 25 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.09 1.53 7.78 -51.93 -0.40 1.13 15 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 28 H 0.29 7.68 8.31 -40.82 -0.34 7.34 15 LS Contribution 258.45 15.07 3.89 3.89 Total: -1.00 -33.50 258.45 -6.49 -39.99 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.29 Total: 0.02 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 0.02 Total: -23.38 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.38 Total: -44.81 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -1.99 Total: -59.82 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 72.09 SS G_CDS: -0.51 Total: 71.58 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.50 -6.49 -39.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952152.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.135 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds