Wall clock time and date at job start Sun Mar 29 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99891 * 2 1 4 4 C 1.54330 * 109.88292 * 238.90375 * 2 1 3 5 5 C 1.55155 * 102.94292 * 218.39370 * 4 2 1 6 6 H 1.09001 * 111.00015 * 277.42463 * 5 4 2 7 7 F 1.39894 * 111.00451 * 153.57499 * 5 4 2 8 8 C 1.54907 * 101.58383 * 35.49718 * 5 4 2 9 9 N 1.47026 * 109.88297 * 121.09824 * 2 1 3 10 10 S 1.65594 * 125.64396 * 298.31770 * 9 2 1 11 11 O 1.42104 * 106.40319 * 203.53901 * 10 9 2 12 12 O 1.42096 * 106.40689 * 336.46278 * 10 9 2 13 13 C 1.76205 * 107.21904 * 90.00201 * 10 9 2 14 14 H 1.08001 * 119.99624 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00285 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99999 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99899 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47355 * 59.99932 * 17 15 13 19 19 H 1.48495 * 109.46804 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47015 * 299.99879 * 17 15 13 21 21 H 1.09000 * 109.46935 * 298.90803 * 1 2 3 22 22 H 1.09003 * 109.47043 * 58.90228 * 1 2 3 23 23 H 1.08995 * 109.47287 * 178.90391 * 1 2 3 24 24 H 1.08998 * 110.71700 * 336.75297 * 4 2 1 25 25 H 1.08991 * 110.72004 * 100.02588 * 4 2 1 26 26 H 1.08997 * 110.36783 * 204.15179 * 8 5 4 27 27 H 1.08997 * 110.45914 * 81.87830 * 8 5 4 28 28 H 0.96994 * 119.99802 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2428 5 6 3.2876 -1.5143 -0.6924 6 1 4.1654 -0.8689 -0.6604 7 9 3.5411 -2.6653 -1.4461 8 6 2.8145 -1.8794 0.7368 9 7 2.0301 -0.7141 1.1839 10 16 1.7580 -0.2806 2.7587 11 8 2.8130 -0.8518 3.5203 12 8 1.4724 1.1114 2.7482 13 6 0.2789 -1.0880 3.2740 14 1 -0.2569 -1.7243 2.5852 15 6 -0.1943 -0.9074 4.5563 16 7 0.4580 -0.1322 5.3949 17 14 -1.7619 -1.7640 5.1026 18 1 -1.5883 -3.2343 4.9880 19 1 -2.0541 -1.4082 6.5144 20 1 -2.8897 -1.3299 4.2396 21 1 -0.3633 0.4968 0.8996 22 1 -0.3633 0.5308 -0.8800 23 1 -0.3633 -1.0274 -0.0197 24 1 1.3052 -1.4459 -1.6182 25 1 2.3529 -0.0461 -2.0200 26 1 3.6716 -2.0339 1.3922 27 1 2.1891 -2.7718 0.7147 28 1 0.1252 -0.0056 6.2971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952152.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:59 Heat of formation + Delta-G solvation = -171.805563 kcal Electronic energy + Delta-G solvation = -15827.675921 eV Core-core repulsion = 12918.059461 eV Total energy + Delta-G solvation = -2909.616460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.59874 -39.35512 -37.48677 -36.19236 -35.20614 -32.14492 -31.22583 -28.27860 -26.66705 -22.89535 -22.19715 -20.53919 -19.32144 -18.31157 -17.85781 -17.10262 -16.39622 -16.01872 -15.80159 -15.77110 -15.14741 -14.67759 -14.22454 -13.96363 -13.54669 -13.34927 -13.30331 -13.09173 -12.97888 -12.56462 -12.49537 -12.34306 -12.17993 -11.97140 -11.65734 -11.46037 -11.25140 -11.01883 -9.87702 -8.76472 -7.49922 0.20281 1.32380 1.34514 1.47605 2.18544 2.55770 2.75667 3.28294 3.50263 3.57334 3.75205 3.96724 4.17349 4.28981 4.42546 4.48148 4.61173 4.77224 4.81792 4.89349 5.07133 5.13848 5.24899 5.39789 5.43123 5.77453 5.89494 6.76227 8.18949 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.035374 B = 0.009125 C = 0.008863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.355086 B = 3067.755342 C = 3158.599732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.132 4.132 5 C 0.086 3.914 6 H 0.120 0.880 7 F -0.207 7.207 8 C 0.087 3.913 9 N -1.018 6.018 10 S 2.733 3.267 11 O -1.042 7.042 12 O -1.032 7.032 13 C -1.035 5.035 14 H 0.119 0.881 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.989 3.011 18 H -0.252 1.252 19 H -0.264 1.264 20 H -0.249 1.249 21 H 0.037 0.963 22 H 0.100 0.900 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 -2.899 -12.813 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.033 3.967 3 H 0.095 0.905 4 C -0.171 4.171 5 C 0.049 3.951 6 H 0.138 0.862 7 F -0.188 7.188 8 C -0.040 4.040 9 N -0.856 5.856 10 S 2.836 3.164 11 O -1.032 7.032 12 O -1.023 7.023 13 C -1.169 5.169 14 H 0.137 0.863 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.807 3.193 18 H -0.175 1.175 19 H -0.188 1.188 20 H -0.173 1.173 21 H 0.056 0.944 22 H 0.118 0.882 23 H 0.085 0.915 24 H 0.118 0.882 25 H 0.141 0.859 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.420 -2.211 -12.079 12.287 hybrid contribution -0.980 -0.637 0.745 1.386 sum -0.560 -2.848 -11.334 11.700 Atomic orbital electron populations 1.22330 0.94701 1.03111 1.03085 1.21468 0.94950 0.96227 0.84050 0.90453 1.23296 0.96773 1.00464 0.96576 1.22733 1.00477 0.83768 0.88158 0.86220 1.92791 1.95693 1.52886 1.77397 1.22551 0.95934 0.89190 0.96301 1.58671 1.66367 1.38423 1.22149 0.99563 0.74928 0.72682 0.69209 1.93295 1.60185 1.80348 1.69371 1.93300 1.87195 1.35736 1.86048 1.30915 1.32526 1.46017 1.07415 0.86334 1.26016 1.01614 0.92150 0.94459 1.69978 1.40747 1.33596 1.08363 0.85173 0.76373 0.79432 0.78285 1.17534 1.18764 1.17271 0.94353 0.88153 0.91517 0.88167 0.85934 0.90386 0.90410 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.31 9.19 71.98 0.66 -4.65 15 2 C 0.14 4.30 3.45 45.34 0.16 4.46 15 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 4 C -0.13 -2.82 6.29 31.78 0.20 -2.62 15 5 C 0.09 2.10 4.86 31.98 0.16 2.26 15 6 H 0.12 2.48 8.14 -2.39 -0.02 2.46 15 7 F -0.21 -5.20 17.24 44.97 0.78 -4.42 15 8 C 0.09 2.87 6.91 86.86 0.60 3.47 15 9 N -1.02 -40.64 3.40 -484.27 -1.65 -42.29 15 10 S 2.73 148.45 4.78 -56.49 -0.27 148.18 15 11 O -1.04 -63.03 17.34 -128.00 -2.22 -65.25 15 12 O -1.03 -61.38 17.42 -128.00 -2.23 -63.61 15 13 C -1.04 -56.99 9.75 67.73 0.66 -56.33 15 14 H 0.12 5.89 7.81 -2.91 -0.02 5.87 15 15 C 0.07 3.92 5.46 84.66 0.46 4.38 15 16 N -0.90 -53.63 13.19 21.45 0.28 -53.35 15 17 Si 0.99 41.26 29.54 68.60 2.03 43.28 15 18 H -0.25 -9.90 7.11 99.48 0.71 -9.20 15 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 20 H -0.25 -9.71 7.11 99.48 0.71 -9.00 15 21 H 0.04 1.46 7.74 -2.39 -0.02 1.44 15 22 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.07 1.93 8.13 -2.39 -0.02 1.91 15 24 H 0.10 1.94 7.84 -2.39 -0.02 1.92 15 25 H 0.12 1.80 8.14 -2.39 -0.02 1.78 15 26 H 0.08 2.71 7.78 -2.39 -0.02 2.69 15 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 28 H 0.30 16.11 8.31 -92.71 -0.77 15.34 15 Total: -1.00 -74.64 258.45 0.77 -73.87 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.16 Total: 12.62 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 2.90 Total: -49.03 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -1.36 Total: -95.64 kcal Atomic # 8 Polarization: -124.41 SS G_CDS: -4.45 Total: -128.86 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.78 Total: -4.42 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 148.45 SS G_CDS: -0.27 Total: 148.18 kcal Total: -74.64 0.77 -73.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952152.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.936 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds