Wall clock time and date at job start Sun Mar 29 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00137 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99744 * 3 2 1 5 5 H 1.48495 * 109.47036 * 29.99519 * 3 2 1 6 6 H 1.48492 * 109.47263 * 149.99551 * 3 2 1 7 7 C 1.37873 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99971 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00003 * 180.02562 * 7 2 1 10 10 O 1.42098 * 106.39987 * 72.54672 * 9 7 2 11 11 O 1.42098 * 106.40335 * 299.62418 * 9 7 2 12 12 N 1.65608 * 107.21760 * 186.08726 * 9 7 2 13 13 C 1.46494 * 120.00061 * 67.24110 * 12 9 7 14 14 C 1.53000 * 113.00078 * 53.62112 * 13 12 9 15 15 O 1.42901 * 109.46757 * 43.96513 * 14 13 12 16 16 C 1.54031 * 113.92794 * 185.55413 * 13 12 9 17 17 O 1.44185 * 85.51825 * 91.66148 * 16 13 12 18 18 C 1.44177 * 93.33589 * 24.19304 * 17 16 13 19 19 H 0.97006 * 119.99773 * 0.02562 * 1 2 3 20 20 H 0.97003 * 119.99911 * 247.24232 * 12 9 7 21 21 H 1.08995 * 109.47425 * 283.96595 * 14 13 12 22 22 H 1.09001 * 109.47680 * 163.96305 * 14 13 12 23 23 H 0.96704 * 113.99722 * 179.97438 * 15 14 13 24 24 H 1.08997 * 113.87040 * 205.80519 * 16 13 12 25 25 H 1.09000 * 113.86524 * 337.51363 * 16 13 12 26 26 H 1.08997 * 113.86272 * 221.65425 * 18 17 16 27 27 H 1.09002 * 113.98231 * 89.97276 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1672 -0.7849 1.3017 11 8 4.1682 -0.5205 -1.1837 12 7 4.2568 -2.7670 -0.1660 13 6 4.0053 -3.4834 -1.4188 14 6 4.5332 -2.7413 -2.6482 15 8 5.8412 -2.2354 -2.3739 16 6 4.3959 -4.9727 -1.3761 17 8 3.0336 -5.2017 -0.9628 18 6 2.5563 -3.9838 -1.5692 19 1 -0.4850 0.8401 -0.0004 20 1 4.7104 -3.2140 0.5657 21 1 3.8661 -1.9130 -2.8870 22 1 4.5789 -3.4266 -3.4946 23 1 6.2388 -1.7526 -3.1114 24 1 4.6372 -5.3936 -2.3521 25 1 5.1349 -5.2131 -0.6118 26 1 1.8361 -3.4398 -0.9580 27 1 2.2351 -4.1005 -2.6042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993623.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:24 Heat of formation + Delta-G solvation = -129.681003 kcal Electronic energy + Delta-G solvation = -16270.506756 eV Core-core repulsion = 13350.344164 eV Total energy + Delta-G solvation = -2920.162591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.055 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40236 -36.30144 -35.45563 -34.36556 -33.26243 -33.03978 -28.90330 -26.81816 -26.07691 -24.53883 -20.08689 -18.86569 -17.56385 -17.03245 -16.89725 -16.01451 -15.58793 -15.39906 -15.02340 -14.37305 -13.85414 -13.69762 -13.36008 -12.90368 -12.52613 -12.02266 -11.53324 -11.38275 -11.20777 -10.75816 -10.59933 -10.47859 -10.43103 -10.03221 -9.57572 -9.32261 -9.24990 -9.11385 -8.57581 -6.83279 -5.38446 2.07536 3.06943 3.15721 3.24571 3.86061 3.92643 4.11907 4.25467 4.56656 4.80591 5.22534 5.38761 5.40446 5.44211 5.59366 5.65924 5.97440 6.10598 6.22972 6.32898 6.35771 6.65061 7.44877 7.70850 8.05098 8.17024 8.67326 10.28123 Molecular weight = 237.05amu Principal moments of inertia in cm(-1) A = 0.032781 B = 0.012272 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.947698 B = 2281.094232 C = 2609.911685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.153 3.847 3 Si 0.820 3.180 4 H -0.246 1.246 5 H -0.260 1.260 6 H -0.234 1.234 7 C -1.023 5.023 8 H 0.125 0.875 9 S 2.681 3.319 10 O -1.010 7.010 11 O -0.998 6.998 12 N -1.090 6.090 13 C 0.129 3.871 14 C 0.063 3.937 15 O -0.554 6.554 16 C 0.041 3.959 17 O -0.375 6.375 18 C 0.015 3.985 19 H 0.281 0.719 20 H 0.409 0.591 21 H 0.078 0.922 22 H 0.048 0.952 23 H 0.374 0.626 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 -6.120 -6.224 10.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.067 4.067 3 Si 0.641 3.359 4 H -0.169 1.169 5 H -0.185 1.185 6 H -0.157 1.157 7 C -1.157 5.157 8 H 0.143 0.857 9 S 2.782 3.218 10 O -1.000 7.000 11 O -0.988 6.988 12 N -0.843 5.843 13 C 0.038 3.962 14 C -0.016 4.016 15 O -0.358 6.358 16 C -0.038 4.038 17 O -0.294 6.294 18 C -0.063 4.063 19 H 0.091 0.909 20 H 0.241 0.759 21 H 0.096 0.904 22 H 0.066 0.934 23 H 0.220 0.780 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.141 0.859 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.677 -5.702 -5.554 10.390 hybrid contribution -0.126 0.609 -0.353 0.715 sum 6.551 -5.094 -5.907 10.186 Atomic orbital electron populations 1.69991 1.06569 1.29099 1.39396 1.24439 0.94798 0.98845 0.88603 0.87581 0.82395 0.84248 0.81642 1.16935 1.18454 1.15726 1.30700 1.15876 1.02105 1.67001 0.85718 1.01293 0.76989 0.70336 0.73202 1.93460 1.85576 1.79502 1.41509 1.93367 1.84659 1.71436 1.49342 1.55117 1.75499 1.33493 1.20167 1.22785 0.95102 0.92799 0.85551 1.22684 0.86391 0.97790 0.94762 1.86448 1.30288 1.75461 1.43622 1.24303 0.86595 0.92046 1.00840 1.89677 1.21203 1.44091 1.74414 1.24926 0.97101 0.84182 1.00052 0.90871 0.75858 0.90374 0.93386 0.77973 0.89397 0.88813 0.85851 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.13 13.96 55.43 0.77 -22.36 15 2 C 0.15 4.28 5.47 -17.82 -0.10 4.19 15 3 Si 0.82 20.80 26.29 -169.99 -4.47 16.33 15 4 H -0.25 -6.02 7.11 56.52 0.40 -5.61 15 5 H -0.26 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.23 -6.16 5.94 56.52 0.34 -5.83 15 7 C -1.02 -27.72 9.59 30.60 0.29 -27.43 15 8 H 0.13 3.36 5.70 -52.49 -0.30 3.06 15 9 S 2.68 66.72 4.21 -107.50 -0.45 66.27 15 10 O -1.01 -27.91 16.68 -57.17 -0.95 -28.86 15 11 O -1.00 -25.23 12.48 -64.88 -0.81 -26.04 15 12 N -1.09 -21.69 5.44 -4.84 -0.03 -21.71 15 13 C 0.13 2.22 1.27 -130.75 -0.17 2.05 15 14 C 0.06 1.01 5.60 37.16 0.21 1.22 15 15 O -0.55 -9.11 12.25 -53.18 -0.65 -9.76 15 16 C 0.04 0.57 8.50 37.61 0.32 0.89 15 17 O -0.38 -6.38 12.45 -35.23 -0.44 -6.81 15 18 C 0.02 0.26 8.42 37.61 0.32 0.58 15 19 H 0.28 7.19 8.31 -40.82 -0.34 6.86 15 20 H 0.41 7.27 8.76 -34.48 -0.30 6.97 15 21 H 0.08 1.40 6.85 -51.93 -0.36 1.04 15 22 H 0.05 0.58 7.85 -51.93 -0.41 0.17 15 23 H 0.37 4.54 9.12 45.56 0.42 4.95 15 24 H 0.09 0.97 7.90 -51.93 -0.41 0.56 15 25 H 0.09 1.19 8.10 -51.93 -0.42 0.77 15 26 H 0.12 2.42 5.05 -51.93 -0.26 2.16 15 27 H 0.09 1.23 8.10 -51.93 -0.42 0.81 15 LS Contribution 238.50 15.07 3.59 3.59 Total: -1.00 -33.42 238.50 -4.22 -37.64 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -1.66 Total: 10.21 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 0.87 Total: -18.50 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.75 Total: -44.07 kcal Atomic # 8 Polarization: -68.62 SS G_CDS: -2.85 Total: -71.48 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.47 Total: 16.33 kcal Atomic # 16 Polarization: 66.72 SS G_CDS: -0.45 Total: 66.27 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -33.42 -4.22 -37.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993623.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.037 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds