Wall clock time and date at job start Sun Mar 29 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00137 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99744 * 3 2 1 5 5 H 1.48495 * 109.47036 * 29.99519 * 3 2 1 6 6 H 1.48492 * 109.47263 * 149.99551 * 3 2 1 7 7 C 1.37873 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99971 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00003 * 180.02562 * 7 2 1 10 10 O 1.42098 * 106.39987 * 72.54672 * 9 7 2 11 11 O 1.42098 * 106.40335 * 299.62418 * 9 7 2 12 12 N 1.65608 * 107.21760 * 186.08726 * 9 7 2 13 13 C 1.46494 * 120.00061 * 67.24110 * 12 9 7 14 14 C 1.53000 * 113.00078 * 53.62112 * 13 12 9 15 15 O 1.42901 * 109.46757 * 43.96513 * 14 13 12 16 16 C 1.54031 * 113.92794 * 185.55413 * 13 12 9 17 17 O 1.44185 * 85.51825 * 91.66148 * 16 13 12 18 18 C 1.44177 * 93.33589 * 24.19304 * 17 16 13 19 19 H 0.97006 * 119.99773 * 0.02562 * 1 2 3 20 20 H 0.97003 * 119.99911 * 247.24232 * 12 9 7 21 21 H 1.08995 * 109.47425 * 283.96595 * 14 13 12 22 22 H 1.09001 * 109.47680 * 163.96305 * 14 13 12 23 23 H 0.96704 * 113.99722 * 179.97438 * 15 14 13 24 24 H 1.08997 * 113.87040 * 205.80519 * 16 13 12 25 25 H 1.09000 * 113.86524 * 337.51363 * 16 13 12 26 26 H 1.08997 * 113.86272 * 221.65425 * 18 17 16 27 27 H 1.09002 * 113.98231 * 89.97276 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1672 -0.7849 1.3017 11 8 4.1682 -0.5205 -1.1837 12 7 4.2568 -2.7670 -0.1660 13 6 4.0053 -3.4834 -1.4188 14 6 4.5332 -2.7413 -2.6482 15 8 5.8412 -2.2354 -2.3739 16 6 4.3959 -4.9727 -1.3761 17 8 3.0336 -5.2017 -0.9628 18 6 2.5563 -3.9838 -1.5692 19 1 -0.4850 0.8401 -0.0004 20 1 4.7104 -3.2140 0.5657 21 1 3.8661 -1.9130 -2.8870 22 1 4.5789 -3.4266 -3.4946 23 1 6.2388 -1.7526 -3.1114 24 1 4.6372 -5.3936 -2.3521 25 1 5.1349 -5.2131 -0.6118 26 1 1.8361 -3.4398 -0.9580 27 1 2.2351 -4.1005 -2.6042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993623.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:24 Heat of formation + Delta-G solvation = -161.626385 kcal Electronic energy + Delta-G solvation = -16271.892011 eV Core-core repulsion = 13350.344164 eV Total energy + Delta-G solvation = -2921.547847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.055 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65956 -37.81412 -37.21349 -36.39296 -35.19943 -34.69318 -30.28030 -28.68888 -27.48330 -25.77354 -21.60341 -20.69781 -19.44805 -18.69228 -18.25850 -17.58948 -17.10614 -16.82624 -16.44523 -16.07657 -15.60229 -15.23856 -15.08164 -14.83901 -13.88613 -13.58000 -13.39653 -13.03158 -12.79786 -12.64323 -12.54713 -12.45661 -11.96582 -11.65400 -11.34323 -11.06501 -10.86749 -10.58598 -10.14575 -8.94760 -7.51049 0.16928 1.06409 1.14807 1.21050 1.88878 2.42933 2.47279 2.66984 2.96582 3.35385 3.65513 4.08049 4.14151 4.26413 4.35842 4.41916 4.60704 4.71245 4.88297 5.01361 5.16248 5.21430 5.42540 6.07055 6.21224 6.55603 7.04339 8.21668 Molecular weight = 237.05amu Principal moments of inertia in cm(-1) A = 0.032781 B = 0.012272 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.947698 B = 2281.094232 C = 2609.911685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.112 3.888 3 Si 0.841 3.159 4 H -0.233 1.233 5 H -0.229 1.229 6 H -0.251 1.251 7 C -1.040 5.040 8 H 0.115 0.885 9 S 2.699 3.301 10 O -1.042 7.042 11 O -1.003 7.003 12 N -1.083 6.083 13 C 0.106 3.894 14 C 0.062 3.938 15 O -0.573 6.573 16 C 0.054 3.946 17 O -0.395 6.395 18 C 0.012 3.988 19 H 0.291 0.709 20 H 0.418 0.582 21 H 0.051 0.949 22 H 0.097 0.903 23 H 0.391 0.609 24 H 0.130 0.870 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.675 -6.863 -7.471 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.105 4.105 3 Si 0.660 3.340 4 H -0.156 1.156 5 H -0.152 1.152 6 H -0.174 1.174 7 C -1.172 5.172 8 H 0.133 0.867 9 S 2.799 3.201 10 O -1.033 7.033 11 O -0.993 6.993 12 N -0.840 5.840 13 C 0.016 3.984 14 C -0.018 4.018 15 O -0.380 6.380 16 C -0.023 4.023 17 O -0.314 6.314 18 C -0.066 4.066 19 H 0.101 0.899 20 H 0.253 0.747 21 H 0.070 0.930 22 H 0.115 0.885 23 H 0.240 0.760 24 H 0.147 0.853 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.742 -6.430 -6.810 12.152 hybrid contribution -0.437 0.729 0.002 0.850 sum 7.306 -5.701 -6.807 11.499 Atomic orbital electron populations 1.70010 1.07317 1.30410 1.40284 1.25095 0.95543 1.01174 0.88655 0.87256 0.81326 0.82864 0.82570 1.15562 1.15184 1.17435 1.31162 1.17815 1.01858 1.66377 0.86669 1.00552 0.75733 0.71485 0.72328 1.93411 1.85576 1.81125 1.43164 1.93355 1.84232 1.72584 1.49118 1.54691 1.75071 1.32270 1.22010 1.23251 0.95773 0.94894 0.84530 1.22735 0.85631 0.97899 0.95502 1.86392 1.30368 1.75979 1.45277 1.24567 0.85431 0.88927 1.03406 1.89659 1.22950 1.43742 1.75077 1.24923 0.96400 0.84154 1.01113 0.89854 0.74733 0.93049 0.88488 0.75982 0.85263 0.87498 0.89326 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.17 13.96 21.44 0.30 -47.87 15 2 C 0.11 6.33 5.47 84.65 0.46 6.80 15 3 Si 0.84 41.67 26.29 68.60 1.80 43.47 15 4 H -0.23 -10.94 7.11 99.48 0.71 -10.24 15 5 H -0.23 -10.12 7.11 99.48 0.71 -9.41 15 6 H -0.25 -13.08 5.94 99.48 0.59 -12.49 15 7 C -1.04 -57.20 9.59 67.73 0.65 -56.55 15 8 H 0.12 6.41 5.70 -2.91 -0.02 6.39 15 9 S 2.70 134.17 4.21 -56.49 -0.24 133.93 15 10 O -1.04 -57.90 16.68 -128.00 -2.14 -60.03 15 11 O -1.00 -50.14 12.48 -120.63 -1.51 -51.65 15 12 N -1.08 -42.11 5.44 -180.28 -0.98 -43.09 15 13 C 0.11 3.41 1.27 4.30 0.01 3.41 15 14 C 0.06 1.79 5.60 71.98 0.40 2.20 15 15 O -0.57 -17.37 12.25 -131.81 -1.61 -18.98 15 16 C 0.05 1.32 8.50 72.27 0.61 1.93 15 17 O -0.40 -12.56 12.45 -148.98 -1.86 -14.42 15 18 C 0.01 0.39 8.42 72.27 0.61 1.00 15 19 H 0.29 14.88 8.31 -92.70 -0.77 14.11 15 20 H 0.42 14.46 8.76 -96.74 -0.85 13.61 15 21 H 0.05 1.76 6.85 -2.39 -0.02 1.74 15 22 H 0.10 1.86 7.85 -2.39 -0.02 1.84 15 23 H 0.39 8.50 9.12 -74.05 -0.68 7.83 15 24 H 0.13 2.11 7.90 -2.39 -0.02 2.10 15 25 H 0.11 2.31 8.10 -2.39 -0.02 2.29 15 26 H 0.09 3.54 5.05 -2.39 -0.01 3.52 15 27 H 0.12 3.09 8.10 -2.39 -0.02 3.07 15 Total: -1.00 -71.60 238.50 -3.89 -75.49 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.41 Total: 24.37 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 2.74 Total: -41.21 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -0.68 Total: -90.97 kcal Atomic # 8 Polarization: -137.97 SS G_CDS: -7.11 Total: -145.08 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.80 Total: 43.47 kcal Atomic # 16 Polarization: 134.17 SS G_CDS: -0.24 Total: 133.93 kcal Total: -71.60 -3.89 -75.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993623.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.137 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds