Wall clock time and date at job start Sun Mar 29 2020 21:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 N 1.46903 * 109.47070 * 180.40575 * 3 2 1 5 5 C 1.46899 * 110.99998 * 61.21109 * 4 3 2 6 6 C 1.50702 * 109.47111 * 66.04525 * 5 4 3 7 7 H 1.08002 * 120.00122 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00523 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99409 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00198 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47165 * 60.00099 * 10 8 6 12 12 H 1.48500 * 109.46629 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47187 * 299.99561 * 10 8 6 14 14 C 1.46901 * 110.99795 * 297.26259 * 4 3 2 15 15 C 1.50703 * 109.46609 * 288.40815 * 14 4 3 16 16 C 1.34847 * 125.89116 * 95.40945 * 15 14 4 17 17 C 1.40893 * 107.41922 * 179.97438 * 16 15 14 18 18 C 1.34849 * 107.41364 * 359.97438 * 17 16 15 19 19 N 1.36341 * 108.22158 * 359.73919 * 18 17 16 20 20 C 1.46500 * 125.63534 * 180.26125 * 19 18 17 21 21 H 1.09010 * 109.47190 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46867 * 299.99455 * 1 2 3 23 23 H 1.08996 * 109.47688 * 59.99971 * 1 2 3 24 24 H 1.08998 * 109.46867 * 240.00545 * 2 1 3 25 25 H 1.08992 * 109.47209 * 120.00112 * 2 1 3 26 26 H 1.09003 * 109.46856 * 60.40562 * 3 2 1 27 27 H 1.08996 * 109.47169 * 300.40484 * 3 2 1 28 28 H 1.09000 * 109.47130 * 186.04559 * 5 4 3 29 29 H 1.09002 * 109.47281 * 306.05272 * 5 4 3 30 30 H 0.96997 * 120.00144 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.47733 * 48.40725 * 14 4 3 32 32 H 1.09000 * 109.46701 * 168.41162 * 14 4 3 33 33 H 1.08001 * 126.28847 * 359.97379 * 16 15 14 34 34 H 1.08000 * 126.29094 * 180.02562 * 17 16 15 35 35 H 1.08005 * 125.88633 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47168 * 270.19045 * 20 19 18 37 37 H 1.08993 * 109.47134 * 30.19606 * 20 19 18 38 38 H 1.09004 * 109.46690 * 150.19737 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0098 5 6 4.0274 0.7850 -1.2168 6 6 3.6607 1.6004 -2.4299 7 1 3.0991 2.5158 -2.3157 8 6 4.0430 1.1784 -3.6856 9 7 4.7282 0.0645 -3.8246 10 14 3.5891 2.1896 -5.1892 11 1 4.1816 3.5461 -5.0708 12 1 4.1141 1.5254 -6.4092 13 1 2.1113 2.3013 -5.2829 14 6 4.0435 0.8115 1.2043 15 6 3.8124 1.7187 2.3853 16 6 2.7743 1.6507 3.2432 17 6 2.9443 2.6770 4.1933 18 6 4.0803 3.3328 3.8801 19 7 4.6208 2.7452 2.7748 20 6 5.8625 3.1525 2.1126 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6825 1.9542 0.8936 27 1 1.6707 1.9584 -0.8863 28 1 5.1121 0.7030 -1.1484 29 1 3.5924 -0.2107 -1.3033 30 1 4.9969 -0.2327 -4.7079 31 1 3.5380 -0.1394 1.3723 32 1 5.1127 0.6382 1.0829 33 1 1.9618 0.9400 3.2084 34 1 2.2864 2.8974 5.0209 35 1 4.4929 4.1755 4.4150 36 1 5.6396 3.8982 1.3495 37 1 6.5440 3.5785 2.8489 38 1 6.3276 2.2837 1.6467 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203263355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:36 Heat of formation + Delta-G solvation = 47.512233 kcal Electronic energy + Delta-G solvation = -17182.485452 eV Core-core repulsion = 14639.780530 eV Total energy + Delta-G solvation = -2542.704922 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83127 -37.26284 -32.81838 -32.45570 -32.09612 -29.67245 -26.79744 -26.00456 -25.70123 -23.48870 -22.06105 -20.18592 -19.71909 -18.45644 -16.54053 -16.05013 -15.31697 -14.88639 -14.53789 -14.30705 -13.69922 -13.34249 -13.28189 -12.90207 -12.42783 -12.12200 -11.95144 -11.91517 -11.71618 -11.41362 -11.19376 -10.93748 -10.90460 -10.76451 -10.64856 -10.46940 -9.89337 -9.66100 -9.22469 -8.43342 -8.20902 -7.64667 -7.12235 -6.02896 -4.03638 2.63989 3.32818 3.35660 3.36856 3.39097 3.41132 4.43111 5.08155 5.13339 5.26381 5.33090 5.46720 5.48867 5.59834 5.61184 5.75922 5.82425 5.92749 5.94515 6.07127 6.12379 6.21389 6.42134 6.48047 6.58337 6.64898 6.69665 6.79397 7.02655 7.29456 7.42852 7.43134 7.64510 7.75338 7.81909 8.09492 8.23936 8.56043 9.03875 9.60316 11.07739 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.007193 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.672019 B = 3891.630901 C = 4554.822977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.067 3.933 4 N -0.531 5.531 5 C 0.190 3.810 6 C -0.503 4.503 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.111 3.889 15 C 0.051 3.949 16 C -0.208 4.208 17 C -0.203 4.203 18 C -0.030 4.030 19 N -0.438 5.438 20 C 0.078 3.922 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.025 0.975 29 H 0.000 1.000 30 H 0.261 0.739 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.154 0.846 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 2.999 12.163 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.061 4.061 4 N -0.254 5.254 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.018 4.018 15 C -0.062 4.062 16 C -0.232 4.232 17 C -0.228 4.228 18 C -0.160 4.160 19 N -0.113 5.113 20 C -0.064 4.064 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.043 0.957 29 H 0.018 0.982 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.171 0.829 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.007 3.487 11.820 12.365 hybrid contribution -0.433 -0.299 -0.886 1.031 sum -1.440 3.188 10.934 11.480 Atomic orbital electron populations 1.21640 0.96485 1.00596 1.01250 1.22155 0.95609 1.00459 1.01952 1.22033 0.88074 0.94434 1.01560 1.62333 1.06910 1.54626 1.01564 1.19791 0.95028 0.93116 0.85573 1.21100 1.34691 1.08135 0.90288 0.92056 1.24961 0.95359 0.95202 0.99004 1.69942 1.38563 1.22025 1.23401 0.86594 0.78773 0.80262 0.81989 1.20273 1.21389 1.20276 1.20572 1.00047 0.93227 0.87941 1.20429 0.93514 0.93593 0.98685 1.20582 1.00357 1.03491 0.98810 1.20738 0.99217 1.00201 1.02684 1.21635 0.98358 1.02611 0.93351 1.43875 1.19453 1.25247 1.22725 1.21934 0.84300 1.02273 0.97932 0.93685 0.93413 0.92819 0.90742 0.93013 0.92359 0.90456 0.95703 0.98227 0.92923 0.93010 0.91317 0.85474 0.85450 0.82881 0.90545 0.90845 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.16 -2.96 5.30 -26.73 -0.14 -3.10 16 3 C 0.07 1.34 5.01 -3.82 -0.02 1.32 16 4 N -0.53 -11.33 4.65 -237.51 -1.10 -12.43 16 5 C 0.19 4.80 4.49 -4.98 -0.02 4.78 16 6 C -0.50 -13.91 8.50 -34.44 -0.29 -14.20 16 7 H 0.06 1.70 7.11 -52.49 -0.37 1.33 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 10 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.11 2.04 4.99 -4.97 -0.02 2.02 16 15 C 0.05 0.88 5.81 -81.79 -0.48 0.40 16 16 C -0.21 -3.40 9.81 -39.78 -0.39 -3.79 16 17 C -0.20 -3.01 10.86 -39.78 -0.43 -3.45 16 18 C -0.03 -0.42 11.43 -16.75 -0.19 -0.61 16 19 N -0.44 -6.82 3.15 -119.90 -0.38 -7.19 16 20 C 0.08 1.01 10.92 59.85 0.65 1.66 16 21 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.57 6.28 -51.93 -0.33 1.24 16 25 H 0.05 0.89 6.26 -51.93 -0.32 0.57 16 26 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 27 H 0.08 1.68 6.83 -51.93 -0.35 1.33 16 28 H 0.02 0.67 7.87 -51.93 -0.41 0.26 16 29 H 0.00 0.00 6.03 -51.93 -0.31 -0.31 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.05 0.94 5.89 -51.93 -0.31 0.63 16 32 H 0.07 1.25 6.89 -51.93 -0.36 0.90 16 33 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.10 7.12 -51.93 -0.37 0.73 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -29.93 304.56 -8.24 -38.17 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.00 Total: 1.27 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.07 Total: -15.32 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.75 Total: -45.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.93 -8.24 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203263355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.680 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds