Wall clock time and date at job start Sun Mar 29 2020 21:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 N 1.46903 * 109.47070 * 180.40575 * 3 2 1 5 5 C 1.46899 * 110.99998 * 61.21109 * 4 3 2 6 6 C 1.50702 * 109.47111 * 66.04525 * 5 4 3 7 7 H 1.08002 * 120.00122 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00523 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99409 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00198 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47165 * 60.00099 * 10 8 6 12 12 H 1.48500 * 109.46629 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47187 * 299.99561 * 10 8 6 14 14 C 1.46901 * 110.99795 * 297.26259 * 4 3 2 15 15 C 1.50703 * 109.46609 * 288.40815 * 14 4 3 16 16 C 1.34847 * 125.89116 * 95.40945 * 15 14 4 17 17 C 1.40893 * 107.41922 * 179.97438 * 16 15 14 18 18 C 1.34849 * 107.41364 * 359.97438 * 17 16 15 19 19 N 1.36341 * 108.22158 * 359.73919 * 18 17 16 20 20 C 1.46500 * 125.63534 * 180.26125 * 19 18 17 21 21 H 1.09010 * 109.47190 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46867 * 299.99455 * 1 2 3 23 23 H 1.08996 * 109.47688 * 59.99971 * 1 2 3 24 24 H 1.08998 * 109.46867 * 240.00545 * 2 1 3 25 25 H 1.08992 * 109.47209 * 120.00112 * 2 1 3 26 26 H 1.09003 * 109.46856 * 60.40562 * 3 2 1 27 27 H 1.08996 * 109.47169 * 300.40484 * 3 2 1 28 28 H 1.09000 * 109.47130 * 186.04559 * 5 4 3 29 29 H 1.09002 * 109.47281 * 306.05272 * 5 4 3 30 30 H 0.96997 * 120.00144 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.47733 * 48.40725 * 14 4 3 32 32 H 1.09000 * 109.46701 * 168.41162 * 14 4 3 33 33 H 1.08001 * 126.28847 * 359.97379 * 16 15 14 34 34 H 1.08000 * 126.29094 * 180.02562 * 17 16 15 35 35 H 1.08005 * 125.88633 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47168 * 270.19045 * 20 19 18 37 37 H 1.08993 * 109.47134 * 30.19606 * 20 19 18 38 38 H 1.09004 * 109.46690 * 150.19737 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0098 5 6 4.0274 0.7850 -1.2168 6 6 3.6607 1.6004 -2.4299 7 1 3.0991 2.5158 -2.3157 8 6 4.0430 1.1784 -3.6856 9 7 4.7282 0.0645 -3.8246 10 14 3.5891 2.1896 -5.1892 11 1 4.1816 3.5461 -5.0708 12 1 4.1141 1.5254 -6.4092 13 1 2.1113 2.3013 -5.2829 14 6 4.0435 0.8115 1.2043 15 6 3.8124 1.7187 2.3853 16 6 2.7743 1.6507 3.2432 17 6 2.9443 2.6770 4.1933 18 6 4.0803 3.3328 3.8801 19 7 4.6208 2.7452 2.7748 20 6 5.8625 3.1525 2.1126 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6825 1.9542 0.8936 27 1 1.6707 1.9584 -0.8863 28 1 5.1121 0.7030 -1.1484 29 1 3.5924 -0.2107 -1.3033 30 1 4.9969 -0.2327 -4.7079 31 1 3.5380 -0.1394 1.3723 32 1 5.1127 0.6382 1.0829 33 1 1.9618 0.9400 3.2084 34 1 2.2864 2.8974 5.0209 35 1 4.4929 4.1755 4.4150 36 1 5.6396 3.8982 1.3495 37 1 6.5440 3.5785 2.8489 38 1 6.3276 2.2837 1.6467 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203263355.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:36 Heat of formation + Delta-G solvation = 30.001422 kcal Electronic energy + Delta-G solvation = -17183.244778 eV Core-core repulsion = 14639.780530 eV Total energy + Delta-G solvation = -2543.464247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02515 -38.92970 -34.85758 -33.71623 -33.49684 -31.22155 -28.65667 -27.16969 -27.08307 -25.25689 -23.70365 -21.38977 -21.29460 -19.74816 -18.38742 -17.55768 -16.95674 -16.51843 -16.11147 -15.82317 -15.08434 -14.95516 -14.68360 -14.17620 -14.04612 -13.46548 -13.35062 -13.17358 -13.03274 -12.83981 -12.79262 -12.63517 -12.56953 -12.32516 -12.29185 -12.21719 -11.75403 -11.34973 -11.22993 -10.58801 -9.37859 -8.98459 -8.75807 -8.18520 -6.27776 1.39449 1.42255 1.42973 1.50496 2.19619 2.25695 2.40946 3.13542 3.50302 3.97239 4.08404 4.15358 4.16713 4.33536 4.40787 4.48888 4.53119 4.57461 4.74332 4.78917 4.82688 4.90181 4.91389 5.07134 5.11839 5.19125 5.31930 5.42905 5.48362 5.51217 5.54078 5.68078 6.06723 6.23177 6.34326 6.47915 6.61893 6.68459 6.87998 7.41194 8.91436 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.007193 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.672019 B = 3891.630901 C = 4554.822977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.154 4.154 3 C 0.074 3.926 4 N -0.537 5.537 5 C 0.208 3.792 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.118 3.882 15 C 0.020 3.980 16 C -0.211 4.211 17 C -0.217 4.217 18 C -0.020 4.020 19 N -0.446 5.446 20 C 0.075 3.925 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.054 0.946 28 H -0.001 1.001 29 H -0.022 1.022 30 H 0.264 0.736 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.190 0.810 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 4.381 13.389 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.193 4.193 3 C -0.054 4.054 4 N -0.260 5.260 5 C 0.082 3.918 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.010 4.010 15 C -0.093 4.093 16 C -0.237 4.237 17 C -0.241 4.241 18 C -0.150 4.150 19 N -0.121 5.121 20 C -0.066 4.066 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.017 0.983 29 H -0.004 1.004 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.207 0.793 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.752 4.874 13.060 14.050 hybrid contribution -0.182 -0.717 -1.168 1.382 sum -1.934 4.158 11.892 12.746 Atomic orbital electron populations 1.21597 0.93903 1.01909 1.01954 1.22030 0.97849 0.98835 1.00620 1.21955 0.87085 0.95399 1.00961 1.62234 1.07993 1.54509 1.01283 1.19408 0.93250 0.92103 0.87071 1.21372 1.34612 1.08145 0.91480 0.92518 1.25809 0.95140 0.96250 1.02079 1.70064 1.39527 1.23559 1.24200 0.85539 0.78775 0.78776 0.78165 1.19521 1.20797 1.19461 1.20456 0.99436 0.93738 0.87370 1.20204 0.95091 0.95040 0.98923 1.20806 1.00010 1.03911 0.98953 1.21072 1.00065 0.99819 1.03167 1.22278 0.97785 1.02640 0.92300 1.44106 1.19887 1.24915 1.23184 1.22055 0.84123 1.01668 0.98784 0.92113 0.91437 0.93344 0.94285 0.92040 0.90930 0.92767 0.98283 1.00400 0.92763 0.92897 0.91996 0.85084 0.83184 0.79342 0.91527 0.87136 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.91 71.98 0.71 -3.28 16 2 C -0.15 -5.65 5.30 30.59 0.16 -5.49 16 3 C 0.07 2.97 5.01 86.30 0.43 3.40 16 4 N -0.54 -23.52 4.65 -905.35 -4.21 -27.73 16 5 C 0.21 10.97 4.49 85.56 0.38 11.36 16 6 C -0.52 -29.36 8.50 25.60 0.22 -29.15 16 7 H 0.06 3.20 7.11 -2.91 -0.02 3.18 16 8 C 0.01 0.30 5.46 84.66 0.46 0.76 16 9 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 10 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 14 C 0.12 4.45 4.99 85.56 0.43 4.88 16 15 C 0.02 0.68 5.81 41.08 0.24 0.92 16 16 C -0.21 -6.57 9.81 22.14 0.22 -6.35 16 17 C -0.22 -5.81 10.86 22.14 0.24 -5.57 16 18 C -0.02 -0.50 11.43 83.21 0.95 0.45 16 19 N -0.45 -13.13 3.15 -533.25 -1.68 -14.81 16 20 C 0.07 1.85 10.92 127.77 1.40 3.25 16 21 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.70 6.28 -2.39 -0.01 1.68 16 25 H 0.06 2.11 6.26 -2.39 -0.01 2.09 16 26 H 0.07 2.70 6.66 -2.39 -0.02 2.68 16 27 H 0.05 2.40 6.83 -2.39 -0.02 2.38 16 28 H 0.00 -0.05 7.87 -2.39 -0.02 -0.07 16 29 H -0.02 -1.22 6.03 -2.39 -0.01 -1.23 16 30 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.05 1.95 5.89 -2.39 -0.01 1.94 16 32 H 0.06 2.36 6.89 -2.39 -0.02 2.34 16 33 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.92 7.12 -2.39 -0.02 1.91 16 Total: -1.00 -64.88 304.56 3.28 -61.60 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.02 Total: 14.87 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 5.84 Total: -24.82 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -5.60 Total: -98.17 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.88 3.28 -61.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203263355.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.598 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds