Wall clock time and date at job start Sun Mar 29 2020 21:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99863 * 2 1 4 4 C 1.50697 * 120.00432 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.81184 * 359.47289 * 4 2 1 6 6 C 1.53028 * 109.64412 * 238.94563 * 4 2 1 7 7 C 1.50066 * 110.14825 * 190.87424 * 6 4 2 8 8 C 1.29257 * 124.01666 * 17.27110 * 7 6 4 9 9 C 1.50693 * 117.81865 * 179.43956 * 8 7 6 10 10 C 1.50066 * 124.21858 * 359.26160 * 8 7 6 11 11 H 1.09002 * 109.35733 * 257.21668 * 10 8 7 12 12 O 1.42899 * 109.35973 * 137.49301 * 10 8 7 13 13 C 1.42906 * 114.00115 * 151.31708 * 12 10 8 14 14 C 1.50697 * 109.46944 * 175.44909 * 13 12 10 15 15 H 1.08003 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00164 * 180.02562 * 14 13 12 17 17 N 1.31525 * 119.99682 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00407 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47047 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.46734 * 299.99685 * 18 16 14 21 21 H 1.48499 * 109.47027 * 59.99650 * 18 16 14 22 22 C 1.53026 * 110.03682 * 17.35433 * 10 8 7 23 23 H 1.07999 * 120.00667 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99737 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46853 * 270.00015 * 3 2 1 26 26 H 1.08999 * 109.46790 * 29.99395 * 3 2 1 27 27 H 1.08996 * 109.47551 * 149.99532 * 3 2 1 28 28 H 1.09000 * 109.36046 * 311.08838 * 6 4 2 29 29 H 1.09003 * 109.35520 * 70.81319 * 6 4 2 30 30 H 1.07995 * 117.96224 * 197.10904 * 7 6 4 31 31 H 1.09000 * 109.47324 * 274.81994 * 9 8 7 32 32 H 1.09001 * 109.47534 * 34.82193 * 9 8 7 33 33 H 1.09001 * 109.47428 * 154.82122 * 9 8 7 34 34 H 1.09002 * 109.46757 * 55.45080 * 13 12 10 35 35 H 1.08993 * 109.47104 * 295.45349 * 13 12 10 36 36 H 0.97001 * 119.99687 * 180.02562 * 17 16 14 37 37 H 1.08990 * 109.64557 * 70.18052 * 22 10 8 38 38 H 1.09006 * 109.64077 * 190.59771 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 1.3602 -2.1378 0.0104 6 6 2.9646 -1.3782 1.2353 7 6 3.9100 -2.5377 1.1173 8 6 4.1728 -3.1464 0.0077 9 6 5.1556 -4.2880 0.0476 10 6 3.5595 -2.7917 -1.3152 11 1 2.7815 -3.5153 -1.5584 12 8 4.5674 -2.8216 -2.3278 13 6 4.0740 -3.1437 -3.6297 14 6 5.1944 -3.0377 -4.6319 15 1 6.1844 -2.7533 -4.3070 16 6 4.9557 -3.3038 -5.9635 17 7 3.7503 -3.6507 -6.3589 18 14 6.3447 -3.1732 -7.2057 19 1 5.8316 -3.5066 -8.5588 20 1 6.8789 -1.7876 -7.2070 21 1 7.4276 -4.1209 -6.8389 22 6 2.9470 -1.3909 -1.2504 23 1 -0.5401 0.9352 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.2451 1.6198 -1.0277 26 1 1.4742 2.0648 0.5137 27 1 3.0158 1.1750 0.5139 28 1 3.5356 -0.4537 1.3212 29 1 2.3483 -1.5063 2.1252 30 1 4.4026 -2.8827 2.0143 31 1 6.1698 -3.8974 -0.0351 32 1 5.0493 -4.8264 0.9894 33 1 4.9587 -4.9661 -0.7828 34 1 3.2786 -2.4486 -3.8990 35 1 3.6825 -4.1609 -3.6285 36 1 3.5824 -3.8383 -7.2957 37 1 3.7407 -0.6463 -1.1903 38 1 2.3445 -1.2129 -2.1412 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:03 Heat of formation + Delta-G solvation = -38.720434 kcal Electronic energy + Delta-G solvation = -16864.170106 eV Core-core repulsion = 14285.433104 eV Total energy + Delta-G solvation = -2578.737002 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.29051 -36.47409 -34.89361 -32.65694 -31.35816 -29.50237 -27.36441 -27.08427 -25.91895 -22.94646 -22.04355 -21.61921 -18.35473 -17.54190 -16.27298 -15.72594 -15.14571 -14.67178 -14.45626 -14.15769 -14.10723 -13.20343 -13.06444 -12.99513 -12.55028 -12.52702 -12.41423 -11.86512 -11.68308 -11.39545 -11.29030 -11.05374 -10.93607 -10.86066 -10.62956 -10.35083 -10.15974 -9.79227 -9.12775 -8.99525 -8.80251 -8.45088 -8.09606 -6.10426 -4.12205 2.28225 2.50665 3.32323 3.35034 3.38959 4.35728 4.73137 4.80429 4.98816 5.06581 5.25696 5.28643 5.34845 5.55956 5.56733 5.68316 5.70687 5.73605 5.80656 5.92323 5.95802 5.96778 6.04823 6.11523 6.19946 6.24687 6.39350 6.52648 6.60290 6.73730 6.90304 7.00646 7.13517 7.29176 7.44374 7.80090 8.16303 8.59169 9.01094 9.52601 11.00980 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.006059 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.976820 B = 4619.829405 C = 5296.616479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.122 4.122 4 C -0.053 4.053 5 H 0.075 0.925 6 C -0.076 4.076 7 C -0.173 4.173 8 C -0.099 4.099 9 C -0.114 4.114 10 C 0.124 3.876 11 H 0.059 0.941 12 O -0.381 6.381 13 C 0.195 3.805 14 C -0.515 4.515 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.899 5.899 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.128 4.128 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.006 0.994 35 H 0.004 0.996 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.927 4.903 14.317 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.108 4.108 3 C -0.178 4.178 4 C -0.071 4.071 5 H 0.093 0.907 6 C -0.113 4.113 7 C -0.191 4.191 8 C -0.099 4.099 9 C -0.170 4.170 10 C 0.066 3.934 11 H 0.077 0.923 12 O -0.300 6.300 13 C 0.121 3.879 14 C -0.553 4.553 15 H 0.084 0.916 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.212 1.212 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.165 4.165 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.825 4.880 14.179 15.475 hybrid contribution 0.276 -0.055 -0.879 0.923 sum -3.550 4.825 13.300 14.586 Atomic orbital electron populations 1.23633 0.95168 1.01574 1.03920 1.21732 0.95178 0.95615 0.98295 1.20888 1.00235 0.94290 1.02418 1.20353 0.96668 0.94624 0.95499 0.90661 1.20417 0.96268 0.97339 0.97258 1.21720 1.01385 0.98545 0.97474 1.20946 0.97539 0.97273 0.94110 1.20804 0.98454 0.96482 1.01286 1.20538 0.90775 0.94992 0.87134 0.92321 1.87945 1.32683 1.91141 1.18275 1.20241 0.95557 0.94259 0.77893 1.21017 0.96299 1.46649 0.91325 0.91629 1.24942 0.96145 0.95120 0.98230 1.69960 1.20414 1.46683 1.16731 0.86409 0.81717 0.78760 0.79676 1.21153 1.20032 1.20003 1.22096 0.98990 0.98600 0.96850 0.88733 0.88637 0.91195 0.92180 0.91588 0.90877 0.91587 0.87896 0.91333 0.92917 0.91497 0.97653 0.97785 0.92612 0.90919 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.39 13.91 29.02 0.40 -1.99 16 2 C -0.11 -1.35 4.89 -101.06 -0.49 -1.85 16 3 C -0.12 -1.36 9.57 36.01 0.34 -1.01 16 4 C -0.05 -0.73 2.41 -91.56 -0.22 -0.95 16 5 H 0.08 1.05 7.79 -51.93 -0.40 0.65 16 6 C -0.08 -0.96 5.39 -28.17 -0.15 -1.11 16 7 C -0.17 -2.42 9.36 -35.85 -0.34 -2.76 16 8 C -0.10 -1.64 5.63 -100.90 -0.57 -2.20 16 9 C -0.11 -1.78 9.36 36.00 0.34 -1.45 16 10 C 0.12 2.41 2.62 -28.18 -0.07 2.33 16 11 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 12 O -0.38 -9.22 9.45 -35.23 -0.33 -9.55 16 13 C 0.19 5.35 5.47 36.00 0.20 5.55 16 14 C -0.51 -15.19 9.43 -34.44 -0.32 -15.52 16 15 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 18 Si 0.91 21.93 29.54 -169.99 -5.02 16.90 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.13 -2.20 4.58 -26.51 -0.12 -2.32 16 23 H 0.09 0.96 8.04 -52.49 -0.42 0.54 16 24 H 0.10 1.07 7.84 -52.49 -0.41 0.66 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 27 H 0.07 0.71 6.40 -51.93 -0.33 0.38 16 28 H 0.07 0.88 6.39 -51.93 -0.33 0.55 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.26 7.85 -52.49 -0.41 0.84 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.68 7.98 -51.93 -0.41 0.26 16 33 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 34 H 0.01 0.16 7.87 -51.93 -0.41 -0.25 16 35 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.07 1.29 8.01 -51.93 -0.42 0.87 16 38 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -30.38 310.37 -7.49 -37.87 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.44 Total: -1.91 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.11 Total: -21.74 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.33 Total: -9.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.38 -7.49 -37.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.848 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds