Wall clock time and date at job start Sun Mar 29 2020 21:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99863 * 2 1 4 4 C 1.50697 * 120.00432 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.81184 * 359.47289 * 4 2 1 6 6 C 1.53028 * 109.64412 * 238.94563 * 4 2 1 7 7 C 1.50066 * 110.14825 * 190.87424 * 6 4 2 8 8 C 1.29257 * 124.01666 * 17.27110 * 7 6 4 9 9 C 1.50693 * 117.81865 * 179.43956 * 8 7 6 10 10 C 1.50066 * 124.21858 * 359.26160 * 8 7 6 11 11 H 1.09002 * 109.35733 * 257.21668 * 10 8 7 12 12 O 1.42899 * 109.35973 * 137.49301 * 10 8 7 13 13 C 1.42906 * 114.00115 * 151.31708 * 12 10 8 14 14 C 1.50697 * 109.46944 * 175.44909 * 13 12 10 15 15 H 1.08003 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00164 * 180.02562 * 14 13 12 17 17 N 1.31525 * 119.99682 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00407 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47047 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.46734 * 299.99685 * 18 16 14 21 21 H 1.48499 * 109.47027 * 59.99650 * 18 16 14 22 22 C 1.53026 * 110.03682 * 17.35433 * 10 8 7 23 23 H 1.07999 * 120.00667 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99737 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46853 * 270.00015 * 3 2 1 26 26 H 1.08999 * 109.46790 * 29.99395 * 3 2 1 27 27 H 1.08996 * 109.47551 * 149.99532 * 3 2 1 28 28 H 1.09000 * 109.36046 * 311.08838 * 6 4 2 29 29 H 1.09003 * 109.35520 * 70.81319 * 6 4 2 30 30 H 1.07995 * 117.96224 * 197.10904 * 7 6 4 31 31 H 1.09000 * 109.47324 * 274.81994 * 9 8 7 32 32 H 1.09001 * 109.47534 * 34.82193 * 9 8 7 33 33 H 1.09001 * 109.47428 * 154.82122 * 9 8 7 34 34 H 1.09002 * 109.46757 * 55.45080 * 13 12 10 35 35 H 1.08993 * 109.47104 * 295.45349 * 13 12 10 36 36 H 0.97001 * 119.99687 * 180.02562 * 17 16 14 37 37 H 1.08990 * 109.64557 * 70.18052 * 22 10 8 38 38 H 1.09006 * 109.64077 * 190.59771 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 1.3602 -2.1378 0.0104 6 6 2.9646 -1.3782 1.2353 7 6 3.9100 -2.5377 1.1173 8 6 4.1728 -3.1464 0.0077 9 6 5.1556 -4.2880 0.0476 10 6 3.5595 -2.7917 -1.3152 11 1 2.7815 -3.5153 -1.5584 12 8 4.5674 -2.8216 -2.3278 13 6 4.0740 -3.1437 -3.6297 14 6 5.1944 -3.0377 -4.6319 15 1 6.1844 -2.7533 -4.3070 16 6 4.9557 -3.3038 -5.9635 17 7 3.7503 -3.6507 -6.3589 18 14 6.3447 -3.1732 -7.2057 19 1 5.8316 -3.5066 -8.5588 20 1 6.8789 -1.7876 -7.2070 21 1 7.4276 -4.1209 -6.8389 22 6 2.9470 -1.3909 -1.2504 23 1 -0.5401 0.9352 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.2451 1.6198 -1.0277 26 1 1.4742 2.0648 0.5137 27 1 3.0158 1.1750 0.5139 28 1 3.5356 -0.4537 1.3212 29 1 2.3483 -1.5063 2.1252 30 1 4.4026 -2.8827 2.0143 31 1 6.1698 -3.8974 -0.0351 32 1 5.0493 -4.8264 0.9894 33 1 4.9587 -4.9661 -0.7828 34 1 3.2786 -2.4486 -3.8990 35 1 3.6825 -4.1609 -3.6285 36 1 3.5824 -3.8383 -7.2957 37 1 3.7407 -0.6463 -1.1903 38 1 2.3445 -1.2129 -2.1412 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:02 Heat of formation + Delta-G solvation = -55.285179 kcal Electronic energy + Delta-G solvation = -16864.888407 eV Core-core repulsion = 14285.433104 eV Total energy + Delta-G solvation = -2579.455303 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.62847 -38.05124 -36.19423 -34.84718 -32.51004 -30.98780 -29.18003 -28.22779 -27.19134 -24.84889 -23.64566 -22.91118 -19.53502 -18.97990 -18.25104 -17.41374 -16.63466 -16.31493 -16.03975 -15.49799 -15.30102 -14.64630 -14.52362 -14.22565 -13.98622 -13.84861 -13.61689 -13.54835 -12.96090 -12.91872 -12.69946 -12.58357 -12.49908 -12.38022 -12.12396 -11.89993 -11.60878 -11.36530 -11.23540 -10.82568 -10.24809 -9.87402 -9.62872 -8.34126 -6.47231 1.21287 1.37743 1.38588 1.43033 1.51638 2.33361 2.99320 3.24205 3.63034 3.77150 3.88390 4.13411 4.16423 4.28114 4.35809 4.43383 4.56536 4.66373 4.74231 4.78760 4.80939 4.84122 4.88456 4.93446 5.03983 5.07901 5.08905 5.14957 5.19463 5.28109 5.34212 5.52933 5.69998 5.76900 5.93961 6.01009 6.05349 6.52302 6.80027 7.24896 8.78084 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.006059 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.976820 B = 4619.829405 C = 5296.616479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.046 4.046 5 H 0.071 0.929 6 C -0.078 4.078 7 C -0.139 4.139 8 C -0.139 4.139 9 C -0.108 4.108 10 C 0.115 3.885 11 H 0.042 0.958 12 O -0.394 6.394 13 C 0.213 3.787 14 C -0.549 4.549 15 H 0.062 0.938 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.274 1.274 20 H -0.265 1.265 21 H -0.264 1.264 22 C -0.120 4.120 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.037 0.963 34 H -0.016 1.016 35 H -0.020 1.020 36 H 0.271 0.729 37 H 0.065 0.935 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 5.859 15.856 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.125 4.125 3 C -0.177 4.177 4 C -0.065 4.065 5 H 0.090 0.910 6 C -0.115 4.115 7 C -0.156 4.156 8 C -0.139 4.139 9 C -0.165 4.165 10 C 0.058 3.942 11 H 0.060 0.940 12 O -0.314 6.314 13 C 0.138 3.862 14 C -0.587 4.587 15 H 0.080 0.920 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.806 3.194 19 H -0.199 1.199 20 H -0.190 1.190 21 H -0.189 1.189 22 C -0.158 4.158 23 H 0.130 0.870 24 H 0.115 0.885 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.002 0.998 35 H -0.002 1.002 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.414 5.837 15.744 17.135 hybrid contribution 0.034 -0.334 -1.269 1.313 sum -3.380 5.503 14.475 15.850 Atomic orbital electron populations 1.23842 0.94969 1.02532 1.02120 1.21750 0.95576 0.95361 0.99840 1.20898 1.00670 0.94092 1.02043 1.20286 0.96349 0.95632 0.94201 0.91027 1.20543 0.96242 0.97266 0.97416 1.22101 0.99304 0.96987 0.97247 1.20816 1.00142 0.99690 0.93250 1.20757 0.97885 0.95984 1.01857 1.20821 0.89923 0.95998 0.87489 0.94011 1.87884 1.34629 1.91113 1.17777 1.19795 0.94568 0.92171 0.79622 1.21351 0.96552 1.48112 0.92656 0.92007 1.25984 0.99155 0.93848 1.00187 1.70077 1.22645 1.46658 1.17646 0.85230 0.78080 0.79318 0.76772 1.19860 1.18973 1.18910 1.21978 0.98955 0.96848 0.98002 0.86989 0.88531 0.92371 0.90166 0.91208 0.89529 0.88661 0.84797 0.91987 0.89638 0.94337 0.99813 1.00219 0.92002 0.91585 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.21 13.91 67.79 0.94 -3.26 16 2 C -0.13 -2.94 4.89 -16.48 -0.08 -3.02 16 3 C -0.12 -2.47 9.57 71.24 0.68 -1.79 16 4 C -0.05 -1.23 2.41 -11.40 -0.03 -1.26 16 5 H 0.07 1.96 7.79 -2.39 -0.02 1.94 16 6 C -0.08 -1.73 5.39 29.66 0.16 -1.57 16 7 C -0.14 -3.50 9.36 27.22 0.25 -3.25 16 8 C -0.14 -4.57 5.63 -14.92 -0.08 -4.65 16 9 C -0.11 -3.39 9.36 71.23 0.67 -2.72 16 10 C 0.12 4.70 2.62 29.66 0.08 4.78 16 11 H 0.04 1.79 7.84 -2.39 -0.02 1.77 16 12 O -0.39 -20.22 9.45 -148.98 -1.41 -21.63 16 13 C 0.21 12.49 5.47 71.24 0.39 12.88 16 14 C -0.55 -33.61 9.43 25.60 0.24 -33.37 16 15 H 0.06 3.73 7.81 -2.91 -0.02 3.71 16 16 C 0.01 0.40 5.46 84.65 0.46 0.86 16 17 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 18 Si 0.98 45.09 29.54 68.60 2.03 47.12 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 22 C -0.12 -4.29 4.58 30.73 0.14 -4.15 16 23 H 0.11 1.98 8.04 -2.91 -0.02 1.96 16 24 H 0.10 2.01 7.84 -2.91 -0.02 1.99 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.30 8.06 -2.39 -0.02 1.28 16 27 H 0.07 1.35 6.40 -2.39 -0.02 1.34 16 28 H 0.09 1.78 6.39 -2.39 -0.02 1.77 16 29 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.13 2.64 7.85 -2.91 -0.02 2.62 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.04 7.98 -2.39 -0.02 2.02 16 33 H 0.04 1.38 8.01 -2.39 -0.02 1.36 16 34 H -0.02 -0.97 7.87 -2.39 -0.02 -0.99 16 35 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.07 2.41 8.01 -2.39 -0.02 2.39 16 38 H 0.04 1.70 7.93 -2.38 -0.02 1.68 16 Total: -1.00 -67.68 310.37 5.73 -61.95 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.00 Total: 9.98 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 3.83 Total: -40.52 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.90 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.41 Total: -21.63 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.68 5.73 -61.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.664 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds