Wall clock time and date at job start Sun Mar 29 2020 21:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00068 * 2 1 4 4 C 1.50707 * 120.00342 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.63135 * 359.58456 * 4 2 1 6 6 C 1.53018 * 109.64254 * 120.00367 * 4 2 1 7 7 C 1.50065 * 110.14834 * 169.33978 * 6 4 2 8 8 C 1.29445 * 124.07337 * 342.86273 * 7 6 4 9 9 C 1.50699 * 117.96471 * 180.47221 * 8 7 6 10 10 C 1.50069 * 124.07245 * 0.49594 * 8 7 6 11 11 H 1.09000 * 109.35640 * 222.76783 * 10 8 7 12 12 O 1.42906 * 109.35663 * 103.05600 * 10 8 7 13 13 C 1.42894 * 114.00137 * 89.72055 * 12 10 8 14 14 C 1.50706 * 109.47263 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 C 1.53018 * 110.04290 * 342.91579 * 10 8 7 23 23 H 1.08005 * 120.00049 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99974 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47140 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.47146 * 299.99468 * 3 2 1 27 27 H 1.08998 * 109.47427 * 59.99664 * 3 2 1 28 28 H 1.08996 * 109.36057 * 49.12567 * 6 4 2 29 29 H 1.09004 * 109.35602 * 289.54223 * 6 4 2 30 30 H 1.07993 * 117.96536 * 162.84518 * 7 6 4 31 31 H 1.09004 * 109.47163 * 270.02380 * 9 8 7 32 32 H 1.09000 * 109.46669 * 30.02068 * 9 8 7 33 33 H 1.08996 * 109.47402 * 150.02055 * 9 8 7 34 34 H 1.09001 * 109.47678 * 60.00187 * 13 12 10 35 35 H 1.09006 * 109.47375 * 299.99854 * 13 12 10 36 36 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 37 37 H 1.08992 * 109.64545 * 169.05116 * 22 10 8 38 38 H 1.09001 * 109.63979 * 289.68523 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3576 -2.1356 0.0084 6 6 2.9448 -1.3908 -1.2474 7 6 3.8885 -2.5522 -1.1351 8 6 4.1662 -3.1562 -0.0244 9 6 5.1434 -4.3026 -0.0686 10 6 3.5751 -2.7863 1.3044 11 1 4.3561 -2.8033 2.0646 12 8 2.5579 -3.7290 1.6493 13 6 3.0358 -4.8560 2.3864 14 6 1.8851 -5.7789 2.6952 15 1 0.8886 -5.5299 2.3614 16 6 2.1047 -6.9417 3.4028 17 7 3.3182 -7.2452 3.8087 18 14 0.6782 -8.0853 3.7860 19 1 0.0720 -7.7020 5.0863 20 1 -0.3431 -7.9793 2.7133 21 1 1.1719 -9.4837 3.8631 22 6 2.9651 -1.3846 1.2351 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 3.1351 1.1059 0.0005 26 1 1.8002 1.8767 -0.8901 27 1 1.8001 1.8767 0.8899 28 1 3.5171 -0.4688 -1.3496 29 1 2.3141 -1.5214 -2.1268 30 1 4.3654 -2.9062 -2.0370 31 1 4.6037 -5.2336 -0.2419 32 1 5.8571 -4.1406 -0.8763 33 1 5.6762 -4.3626 0.8804 34 1 3.4881 -4.5157 3.3180 35 1 3.7802 -5.3884 1.7943 36 1 4.0589 -6.6512 3.6100 37 1 2.3724 -1.1983 2.1306 38 1 3.7598 -0.6427 1.1570 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:06 Heat of formation + Delta-G solvation = -41.632068 kcal Electronic energy + Delta-G solvation = -17044.352573 eV Core-core repulsion = 14465.489313 eV Total energy + Delta-G solvation = -2578.863260 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.37124 -36.51538 -34.77891 -32.90569 -31.40594 -29.64750 -27.36962 -26.77502 -25.71236 -22.71276 -22.50133 -21.66893 -18.39096 -17.46558 -16.97450 -15.59618 -15.20162 -14.56308 -14.53390 -13.94973 -13.71464 -13.46198 -13.11003 -13.02931 -12.67451 -12.58360 -12.34018 -11.88652 -11.83688 -11.72023 -11.38299 -11.26443 -10.78329 -10.67243 -10.40974 -10.33654 -10.10709 -9.83966 -8.93114 -8.80906 -8.69762 -8.43346 -8.17443 -6.45528 -4.13708 2.32631 2.50940 3.42822 3.46965 3.63463 4.45981 4.72389 4.86949 4.95329 5.05741 5.23364 5.32286 5.33087 5.41474 5.57426 5.60987 5.63458 5.73783 5.78739 5.86542 5.92703 6.00436 6.04493 6.06726 6.12126 6.22607 6.32531 6.47166 6.55465 6.76063 6.80964 6.90143 7.04286 7.18040 7.30238 7.91965 8.19897 8.65627 8.82447 9.56524 10.94678 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.006327 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.606502 B = 4424.718124 C = 5060.363397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.119 4.119 4 C -0.052 4.052 5 H 0.088 0.912 6 C -0.075 4.075 7 C -0.160 4.160 8 C -0.128 4.128 9 C -0.121 4.121 10 C 0.121 3.879 11 H 0.056 0.944 12 O -0.370 6.370 13 C 0.183 3.817 14 C -0.595 4.595 15 H 0.059 0.941 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 1.080 2.920 19 H -0.286 1.286 20 H -0.287 1.287 21 H -0.283 1.283 22 C -0.102 4.102 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.059 0.941 34 H -0.008 1.008 35 H 0.002 0.998 36 H 0.267 0.733 37 H 0.072 0.928 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 13.748 -8.739 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.115 4.115 3 C -0.176 4.176 4 C -0.070 4.070 5 H 0.107 0.893 6 C -0.112 4.112 7 C -0.178 4.178 8 C -0.129 4.129 9 C -0.177 4.177 10 C 0.062 3.938 11 H 0.074 0.926 12 O -0.289 6.289 13 C 0.108 3.892 14 C -0.633 4.633 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.548 5.548 18 Si 0.907 3.093 19 H -0.213 1.213 20 H -0.213 1.213 21 H -0.209 1.209 22 C -0.140 4.140 23 H 0.111 0.889 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.010 0.990 35 H 0.020 0.980 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.032 12.330 -8.049 14.725 hybrid contribution 0.767 1.324 -0.698 1.682 sum 0.799 13.655 -8.746 16.235 Atomic orbital electron populations 1.23669 0.95330 1.01675 1.03114 1.21761 0.95272 0.95448 0.98976 1.20844 1.00351 0.94777 1.01614 1.20277 0.97062 0.94939 0.94746 0.89348 1.20392 0.96374 0.96723 0.97718 1.21786 1.00451 0.98641 0.96927 1.21476 0.97950 0.97173 0.96277 1.20992 0.97530 0.97537 1.01685 1.20685 0.90985 0.89936 0.92155 0.92609 1.87987 1.32078 1.33986 1.74899 1.20397 0.96354 0.83416 0.89014 1.21935 0.95292 1.07027 1.39047 0.92237 1.25901 1.01883 0.97231 0.93568 1.70775 0.99872 1.39655 1.44521 0.83394 0.73875 0.75697 0.76321 1.21255 1.21261 1.20851 1.21631 0.98821 0.95147 0.98379 0.88873 0.88306 0.91871 0.91901 0.91799 0.91216 0.91461 0.88252 0.90997 0.92520 0.92190 0.99011 0.98047 0.92323 0.90965 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.51 13.95 29.02 0.40 -2.11 16 2 C -0.11 -1.46 4.89 -101.06 -0.49 -1.96 16 3 C -0.12 -1.22 9.36 36.01 0.34 -0.88 16 4 C -0.05 -0.78 2.33 -91.72 -0.21 -0.99 16 5 H 0.09 1.59 7.43 -51.93 -0.39 1.21 16 6 C -0.08 -1.01 5.38 -28.18 -0.15 -1.16 16 7 C -0.16 -2.43 9.37 -35.90 -0.34 -2.76 16 8 C -0.13 -2.24 5.43 -100.94 -0.55 -2.79 16 9 C -0.12 -2.03 8.55 36.01 0.31 -1.72 16 10 C 0.12 2.33 2.65 -28.18 -0.07 2.25 16 11 H 0.06 1.07 7.73 -51.93 -0.40 0.67 16 12 O -0.37 -9.07 9.54 -35.23 -0.34 -9.40 16 13 C 0.18 4.99 4.75 36.01 0.17 5.16 16 14 C -0.59 -17.85 9.43 -34.44 -0.32 -18.18 16 15 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 16 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 17 N -0.91 -28.05 13.65 55.43 0.76 -27.29 16 18 Si 1.08 25.79 29.90 -169.99 -5.08 20.70 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.10 -1.64 4.68 -26.68 -0.12 -1.76 16 23 H 0.09 0.99 8.05 -52.48 -0.42 0.56 16 24 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 25 H 0.06 0.62 6.42 -51.93 -0.33 0.29 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.82 6.90 -51.93 -0.36 0.46 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.35 7.81 -52.49 -0.41 0.94 16 31 H 0.07 1.34 7.77 -51.93 -0.40 0.94 16 32 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 33 H 0.06 1.02 8.00 -51.93 -0.42 0.60 16 34 H -0.01 -0.22 7.95 -51.93 -0.41 -0.63 16 35 H 0.00 0.05 6.25 -51.93 -0.32 -0.27 16 36 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 0.94 7.41 -51.93 -0.38 0.55 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -31.56 305.70 -7.47 -39.02 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.26 Total: -1.15 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -1.14 Total: -26.49 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.76 Total: -27.29 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.34 Total: -9.40 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.56 -7.47 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.610 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds