Wall clock time and date at job start Sun Mar 29 2020 21:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00068 * 2 1 4 4 C 1.50707 * 120.00342 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.63135 * 359.58456 * 4 2 1 6 6 C 1.53018 * 109.64254 * 120.00367 * 4 2 1 7 7 C 1.50065 * 110.14834 * 169.33978 * 6 4 2 8 8 C 1.29445 * 124.07337 * 342.86273 * 7 6 4 9 9 C 1.50699 * 117.96471 * 180.47221 * 8 7 6 10 10 C 1.50069 * 124.07245 * 0.49594 * 8 7 6 11 11 H 1.09000 * 109.35640 * 222.76783 * 10 8 7 12 12 O 1.42906 * 109.35663 * 103.05600 * 10 8 7 13 13 C 1.42894 * 114.00137 * 89.72055 * 12 10 8 14 14 C 1.50706 * 109.47263 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 C 1.53018 * 110.04290 * 342.91579 * 10 8 7 23 23 H 1.08005 * 120.00049 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99974 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47140 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.47146 * 299.99468 * 3 2 1 27 27 H 1.08998 * 109.47427 * 59.99664 * 3 2 1 28 28 H 1.08996 * 109.36057 * 49.12567 * 6 4 2 29 29 H 1.09004 * 109.35602 * 289.54223 * 6 4 2 30 30 H 1.07993 * 117.96536 * 162.84518 * 7 6 4 31 31 H 1.09004 * 109.47163 * 270.02380 * 9 8 7 32 32 H 1.09000 * 109.46669 * 30.02068 * 9 8 7 33 33 H 1.08996 * 109.47402 * 150.02055 * 9 8 7 34 34 H 1.09001 * 109.47678 * 60.00187 * 13 12 10 35 35 H 1.09006 * 109.47375 * 299.99854 * 13 12 10 36 36 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 37 37 H 1.08992 * 109.64545 * 169.05116 * 22 10 8 38 38 H 1.09001 * 109.63979 * 289.68523 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3576 -2.1356 0.0084 6 6 2.9448 -1.3908 -1.2474 7 6 3.8885 -2.5522 -1.1351 8 6 4.1662 -3.1562 -0.0244 9 6 5.1434 -4.3026 -0.0686 10 6 3.5751 -2.7863 1.3044 11 1 4.3561 -2.8033 2.0646 12 8 2.5579 -3.7290 1.6493 13 6 3.0358 -4.8560 2.3864 14 6 1.8851 -5.7789 2.6952 15 1 0.8886 -5.5299 2.3614 16 6 2.1047 -6.9417 3.4028 17 7 3.3182 -7.2452 3.8087 18 14 0.6782 -8.0853 3.7860 19 1 0.0720 -7.7020 5.0863 20 1 -0.3431 -7.9793 2.7133 21 1 1.1719 -9.4837 3.8631 22 6 2.9651 -1.3846 1.2351 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 3.1351 1.1059 0.0005 26 1 1.8002 1.8767 -0.8901 27 1 1.8001 1.8767 0.8899 28 1 3.5171 -0.4688 -1.3496 29 1 2.3141 -1.5214 -2.1268 30 1 4.3654 -2.9062 -2.0370 31 1 4.6037 -5.2336 -0.2419 32 1 5.8571 -4.1406 -0.8763 33 1 5.6762 -4.3626 0.8804 34 1 3.4881 -4.5157 3.3180 35 1 3.7802 -5.3884 1.7943 36 1 4.0589 -6.6512 3.6100 37 1 2.3724 -1.1983 2.1306 38 1 3.7598 -0.6427 1.1570 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:06 Heat of formation + Delta-G solvation = -59.429319 kcal Electronic energy + Delta-G solvation = -17045.124320 eV Core-core repulsion = 14465.489313 eV Total energy + Delta-G solvation = -2579.635006 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75136 -38.07388 -36.15764 -35.09491 -32.61052 -31.07711 -28.76335 -28.20867 -27.21505 -24.73904 -24.05008 -22.92531 -19.56388 -19.17462 -18.86707 -17.14426 -16.60245 -16.13877 -15.78900 -15.66297 -15.19514 -14.79773 -14.67881 -14.41371 -14.03147 -13.88036 -13.67926 -13.45595 -13.35397 -13.09078 -12.66641 -12.62085 -12.40233 -12.34804 -11.94271 -11.73849 -11.67604 -11.23354 -10.86045 -10.79756 -10.29283 -9.89596 -9.74953 -8.85421 -6.55922 1.17213 1.35875 1.49388 1.59070 1.79138 2.47439 3.01426 3.15433 3.63176 3.68603 3.82211 4.05369 4.13356 4.28513 4.30694 4.44388 4.52629 4.57124 4.60900 4.66054 4.71092 4.79333 4.80607 4.85199 4.90831 5.01121 5.07146 5.09111 5.15373 5.19594 5.35559 5.63848 5.67529 5.75604 5.91393 6.00423 6.05306 6.31496 6.67324 7.24559 8.55377 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.006327 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.606502 B = 4424.718124 C = 5060.363397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.116 4.116 4 C -0.051 4.051 5 H 0.047 0.953 6 C -0.076 4.076 7 C -0.132 4.132 8 C -0.167 4.167 9 C -0.115 4.115 10 C 0.110 3.890 11 H 0.046 0.954 12 O -0.390 6.390 13 C 0.197 3.803 14 C -0.624 4.624 15 H 0.048 0.952 16 C -0.027 4.027 17 N -0.927 5.927 18 Si 1.128 2.872 19 H -0.267 1.267 20 H -0.272 1.272 21 H -0.273 1.273 22 C -0.096 4.096 23 H 0.116 0.884 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.045 0.955 34 H -0.027 1.027 35 H -0.006 1.006 36 H 0.255 0.745 37 H 0.057 0.943 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 15.320 -10.145 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.118 4.118 3 C -0.172 4.172 4 C -0.069 4.069 5 H 0.066 0.934 6 C -0.112 4.112 7 C -0.150 4.150 8 C -0.168 4.168 9 C -0.172 4.172 10 C 0.053 3.947 11 H 0.064 0.936 12 O -0.310 6.310 13 C 0.122 3.878 14 C -0.661 4.661 15 H 0.067 0.933 16 C -0.224 4.224 17 N -0.563 5.563 18 Si 0.947 3.053 19 H -0.192 1.192 20 H -0.197 1.197 21 H -0.198 1.198 22 C -0.133 4.133 23 H 0.134 0.866 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.142 0.858 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.065 0.935 34 H -0.009 1.009 35 H 0.012 0.988 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.275 13.937 -9.465 16.849 hybrid contribution 0.893 0.926 -0.325 1.327 sum 0.618 14.863 -9.790 17.808 Atomic orbital electron populations 1.23786 0.95550 1.01983 1.03058 1.21819 0.95348 0.95515 0.99104 1.20871 1.00245 0.93208 1.02904 1.20184 0.96558 0.95064 0.95115 0.93407 1.20503 0.96221 0.97309 0.97176 1.22180 0.98622 0.97543 0.96660 1.21358 1.00191 0.99127 0.96098 1.20929 0.97758 0.96248 1.02260 1.21022 0.90060 0.90429 0.93234 0.93642 1.87926 1.34490 1.33986 1.74591 1.20018 0.95258 0.84159 0.88364 1.22289 0.95527 1.08381 1.39933 0.93330 1.27564 1.03667 0.98737 0.92481 1.70898 1.00347 1.39646 1.45416 0.82818 0.71061 0.73989 0.77405 1.19222 1.19695 1.19810 1.21628 0.99648 0.93562 0.98476 0.86555 0.90121 0.91219 0.90019 0.91064 0.88015 0.90025 0.85813 0.93851 0.89200 0.93549 1.00898 0.98822 0.93560 0.92463 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.90 13.95 67.79 0.95 -3.95 16 2 C -0.12 -2.77 4.89 -16.48 -0.08 -2.85 16 3 C -0.12 -1.93 9.36 71.24 0.67 -1.27 16 4 C -0.05 -1.47 2.33 -11.51 -0.03 -1.50 16 5 H 0.05 1.76 7.43 -2.39 -0.02 1.75 16 6 C -0.08 -1.80 5.38 29.66 0.16 -1.64 16 7 C -0.13 -3.70 9.37 27.03 0.25 -3.44 16 8 C -0.17 -5.81 5.43 -15.10 -0.08 -5.89 16 9 C -0.12 -3.94 8.55 71.24 0.61 -3.33 16 10 C 0.11 4.37 2.65 29.66 0.08 4.44 16 11 H 0.05 1.84 7.73 -2.39 -0.02 1.82 16 12 O -0.39 -20.08 9.54 -148.98 -1.42 -21.51 16 13 C 0.20 11.36 4.75 71.24 0.34 11.70 16 14 C -0.62 -38.76 9.43 25.60 0.24 -38.52 16 15 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 16 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 17 N -0.93 -58.21 13.65 21.45 0.29 -57.92 16 18 Si 1.13 51.69 29.90 68.60 2.05 53.74 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C -0.10 -3.03 4.68 30.63 0.14 -2.88 16 23 H 0.12 2.18 8.05 -2.91 -0.02 2.16 16 24 H 0.08 2.17 7.84 -2.91 -0.02 2.14 16 25 H 0.07 1.07 6.42 -2.39 -0.02 1.06 16 26 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.88 6.90 -2.39 -0.02 1.87 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.12 2.90 7.81 -2.91 -0.02 2.88 16 31 H 0.04 1.68 7.77 -2.39 -0.02 1.67 16 32 H 0.09 2.37 7.90 -2.39 -0.02 2.35 16 33 H 0.05 1.65 8.00 -2.39 -0.02 1.63 16 34 H -0.03 -1.59 7.95 -2.39 -0.02 -1.61 16 35 H -0.01 -0.34 6.25 -2.38 -0.01 -0.36 16 36 H 0.26 16.21 7.22 -92.71 -0.67 15.54 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.10 2.51 7.41 -2.39 -0.02 2.49 16 Total: -1.00 -70.43 305.70 5.74 -64.70 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.11 Total: 11.26 kcal Atomic # 6 Polarization: -53.98 SS G_CDS: 3.71 Total: -50.27 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.29 Total: -57.92 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.42 Total: -21.51 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -70.43 5.74 -64.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.268 kcal (2) G-P(sol) polarization free energy of solvation -70.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds