Wall clock time and date at job start Sun Mar 29 2020 21:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00054 * 2 1 4 4 C 1.50699 * 120.00318 * 179.97438 * 2 1 3 5 5 H 1.09008 * 109.80718 * 0.52705 * 4 2 1 6 6 C 1.53021 * 109.64610 * 121.05547 * 4 2 1 7 7 C 1.50058 * 110.14901 * 169.12195 * 6 4 2 8 8 C 1.29445 * 124.07907 * 342.87571 * 7 6 4 9 9 C 1.50702 * 117.96493 * 180.49097 * 8 7 6 10 10 C 1.50069 * 124.07094 * 0.46336 * 8 7 6 11 11 H 1.09002 * 109.24364 * 103.01491 * 10 8 7 12 12 O 1.42906 * 109.35647 * 222.66562 * 10 8 7 13 13 C 1.42902 * 113.99921 * 208.51574 * 12 10 8 14 14 C 1.50698 * 109.47158 * 175.59537 * 13 12 10 15 15 H 1.07999 * 120.00000 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99999 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99723 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99905 * 179.72151 * 16 14 13 19 19 H 1.48503 * 109.46799 * 59.99899 * 18 16 14 20 20 H 1.48496 * 109.47299 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47210 * 299.99783 * 18 16 14 22 22 C 1.53022 * 110.14983 * 342.87104 * 10 8 7 23 23 H 1.08000 * 119.99860 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00089 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47390 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47322 * 300.00084 * 3 2 1 27 27 H 1.09005 * 109.47191 * 59.99803 * 3 2 1 28 28 H 1.09001 * 109.35918 * 289.33591 * 6 4 2 29 29 H 1.09004 * 109.35294 * 48.91474 * 6 4 2 30 30 H 1.08007 * 117.96424 * 162.89250 * 7 6 4 31 31 H 1.08995 * 109.46798 * 275.01226 * 9 8 7 32 32 H 1.08997 * 109.47094 * 35.01277 * 9 8 7 33 33 H 1.08997 * 109.47061 * 155.01298 * 9 8 7 34 34 H 1.09003 * 109.47101 * 55.59385 * 13 12 10 35 35 H 1.09001 * 109.47104 * 295.59828 * 13 12 10 36 36 H 0.97005 * 119.99396 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.64360 * 169.12054 * 22 10 8 38 38 H 1.09002 * 109.64282 * 289.54045 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 1.3601 -2.1378 -0.0085 6 6 2.9646 -1.3794 -1.2340 7 6 3.9099 -2.5386 -1.1149 8 6 4.1719 -3.1498 -0.0043 9 6 5.1537 -4.2926 -0.0410 10 6 3.5592 -2.7907 1.3178 11 1 2.7812 -3.5142 1.5615 12 8 4.5671 -2.8198 2.3304 13 6 4.0725 -3.1340 3.6338 14 6 5.2270 -3.2435 4.5962 15 1 6.2373 -3.0890 4.2474 16 6 4.9934 -3.5419 5.9219 17 7 3.7631 -3.7305 6.3465 18 14 6.4251 -3.6853 7.1133 19 1 7.1611 -2.3964 7.1599 20 1 5.9111 -4.0105 8.4679 21 1 7.3410 -4.7623 6.6591 22 6 2.9468 -1.3899 1.2518 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 3.1351 1.1060 0.0005 26 1 1.8002 1.8767 -0.8899 27 1 1.8001 1.8767 0.8900 28 1 2.3483 -1.5056 -2.1241 29 1 3.5356 -0.4549 -1.3206 30 1 4.4027 -2.8845 -2.0116 31 1 4.6334 -5.2097 -0.3169 32 1 5.9306 -4.0806 -0.7755 33 1 5.6070 -4.4138 0.9427 34 1 3.5364 -4.0825 3.6001 35 1 3.3963 -2.3461 3.9656 36 1 3.5988 -3.9401 7.2793 37 1 2.3412 -1.2125 2.1406 38 1 3.7407 -0.6452 1.1948 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610325.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:08 Heat of formation + Delta-G solvation = -39.243372 kcal Electronic energy + Delta-G solvation = -16857.845328 eV Core-core repulsion = 14279.085650 eV Total energy + Delta-G solvation = -2578.759678 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.28524 -36.48140 -34.87181 -32.65989 -31.34951 -29.49290 -27.37027 -27.08584 -25.91740 -22.94987 -22.02090 -21.62061 -18.35506 -17.53374 -16.28017 -15.72790 -15.13243 -14.69090 -14.45733 -14.14926 -14.07826 -13.22115 -13.10568 -13.04512 -12.58501 -12.46452 -12.39708 -11.77960 -11.69209 -11.41344 -11.29730 -11.07174 -10.93213 -10.86814 -10.62520 -10.33538 -10.16242 -9.76433 -9.16750 -8.98575 -8.77243 -8.44650 -8.11058 -6.10555 -4.12396 2.27559 2.50138 3.32299 3.35064 3.38915 4.35524 4.73135 4.80433 4.99286 5.05961 5.25650 5.29368 5.35355 5.57350 5.60206 5.66038 5.69564 5.71893 5.79424 5.94639 5.96520 6.00568 6.03388 6.07762 6.19026 6.23258 6.43067 6.58320 6.59476 6.72648 6.91414 7.00553 7.12876 7.31200 7.44404 7.79816 8.16039 8.58767 9.00850 9.52419 11.00825 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.026702 B = 0.005962 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.375829 B = 4695.248687 C = 5364.714127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.121 4.121 4 C -0.053 4.053 5 H 0.075 0.925 6 C -0.075 4.075 7 C -0.174 4.174 8 C -0.098 4.098 9 C -0.123 4.123 10 C 0.124 3.876 11 H 0.059 0.941 12 O -0.381 6.381 13 C 0.195 3.805 14 C -0.515 4.515 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.128 4.128 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.005 0.995 35 H 0.006 0.994 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 5.090 -14.225 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.108 4.108 3 C -0.178 4.178 4 C -0.072 4.072 5 H 0.093 0.907 6 C -0.112 4.112 7 C -0.192 4.192 8 C -0.098 4.098 9 C -0.179 4.179 10 C 0.065 3.935 11 H 0.077 0.923 12 O -0.300 6.300 13 C 0.121 3.879 14 C -0.553 4.553 15 H 0.084 0.916 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.734 3.266 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.165 4.165 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.022 0.978 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.877 5.070 -14.086 15.464 hybrid contribution 0.268 -0.182 0.820 0.882 sum -3.609 4.889 -13.265 14.591 Atomic orbital electron populations 1.23613 0.95228 1.01582 1.03930 1.21741 0.95162 0.95606 0.98274 1.20862 1.00670 0.94586 1.01695 1.20369 0.96667 0.94632 0.95505 0.90664 1.20383 0.96252 0.97333 0.97220 1.21772 1.01588 0.98466 0.97352 1.20989 0.97576 0.97223 0.94026 1.20897 0.97469 0.95828 1.03732 1.20523 0.90751 0.94945 0.87256 0.92311 1.87925 1.32674 1.91213 1.18234 1.20250 0.95613 0.94249 0.77818 1.21019 0.93655 1.48062 0.92611 0.91621 1.24940 0.96229 0.95201 0.98055 1.69956 1.19289 1.48127 1.16384 0.86408 0.81906 0.78778 0.79462 1.20021 1.21160 1.20011 1.22101 0.98973 0.98580 0.96878 0.88737 0.88613 0.91553 0.91854 0.91565 0.91608 0.90938 0.87936 0.92281 0.92576 0.89964 0.97762 0.97643 0.92607 0.91394 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.39 13.96 29.02 0.40 -1.98 16 2 C -0.11 -1.34 4.89 -101.07 -0.49 -1.84 16 3 C -0.12 -1.35 9.36 36.01 0.34 -1.01 16 4 C -0.05 -0.74 2.35 -91.56 -0.22 -0.95 16 5 H 0.07 1.05 7.79 -51.92 -0.40 0.65 16 6 C -0.08 -0.95 5.38 -28.18 -0.15 -1.10 16 7 C -0.17 -2.44 9.37 -35.90 -0.34 -2.78 16 8 C -0.10 -1.63 5.64 -100.94 -0.57 -2.20 16 9 C -0.12 -1.94 9.79 36.01 0.35 -1.59 16 10 C 0.12 2.40 2.68 -28.18 -0.08 2.32 16 11 H 0.06 1.16 7.74 -51.93 -0.40 0.76 16 12 O -0.38 -9.19 8.85 -35.23 -0.31 -9.50 16 13 C 0.19 5.34 5.53 36.00 0.20 5.54 16 14 C -0.52 -15.17 9.43 -34.44 -0.32 -15.49 16 15 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 18 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.13 -2.19 4.60 -26.52 -0.12 -2.31 16 23 H 0.09 0.96 8.05 -52.49 -0.42 0.54 16 24 H 0.10 1.07 7.84 -52.48 -0.41 0.66 16 25 H 0.07 0.76 6.40 -51.93 -0.33 0.43 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.88 6.83 -51.93 -0.35 0.52 16 30 H 0.10 1.26 7.87 -52.48 -0.41 0.85 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.77 8.00 -51.93 -0.42 0.36 16 33 H 0.08 1.53 7.09 -51.93 -0.37 1.16 16 34 H 0.00 0.13 7.98 -51.93 -0.41 -0.28 16 35 H 0.01 0.16 8.12 -51.93 -0.42 -0.26 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 1.25 8.12 -51.93 -0.42 0.82 16 38 H 0.07 1.28 7.46 -51.93 -0.39 0.90 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -30.25 309.39 -7.43 -37.68 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.40 Total: -1.66 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -1.09 Total: -21.84 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.31 Total: -9.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.25 -7.43 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610325.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.559 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds