Wall clock time and date at job start Sun Mar 29 2020 21:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46796 * 2 1 4 4 N 1.46899 * 109.46869 * 174.87241 * 3 2 1 5 5 C 1.46905 * 110.99992 * 199.74611 * 4 3 2 6 6 C 1.50696 * 109.46860 * 66.05074 * 5 4 3 7 7 H 1.07993 * 120.00271 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99659 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00048 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00187 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47177 * 90.00347 * 10 8 6 12 12 H 1.48501 * 109.47226 * 210.00480 * 10 8 6 13 13 H 1.48498 * 109.47323 * 330.00681 * 10 8 6 14 14 C 1.46900 * 110.99905 * 75.79343 * 4 3 2 15 15 C 1.50705 * 109.47138 * 199.67328 * 14 4 3 16 16 C 1.34847 * 125.89176 * 264.33820 * 15 14 4 17 17 C 1.40892 * 107.41525 * 179.88627 * 16 15 14 18 18 C 1.34848 * 107.41928 * 0.38202 * 17 16 15 19 19 C 1.50701 * 125.89435 * 179.73573 * 18 17 16 20 20 N 1.36341 * 108.21783 * 359.76720 * 18 17 16 21 21 H 0.97001 * 125.64149 * 180.02562 * 20 18 17 22 22 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47043 * 299.99444 * 1 2 3 24 24 H 1.08997 * 109.47344 * 59.99443 * 1 2 3 25 25 H 1.09000 * 109.46530 * 240.00583 * 2 1 3 26 26 H 1.08999 * 109.47233 * 120.00030 * 2 1 3 27 27 H 1.08997 * 109.47325 * 54.87668 * 3 2 1 28 28 H 1.09000 * 109.47584 * 294.87489 * 3 2 1 29 29 H 1.08999 * 109.46850 * 186.04785 * 5 4 3 30 30 H 1.08999 * 109.47124 * 306.04706 * 5 4 3 31 31 H 0.96996 * 120.00117 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.47308 * 79.67639 * 14 4 3 33 33 H 1.09000 * 109.47148 * 319.67700 * 14 4 3 34 34 H 1.08001 * 126.29146 * 0.02877 * 16 15 14 35 35 H 1.08005 * 126.29349 * 180.17338 * 17 16 15 36 36 H 1.09003 * 109.46755 * 270.03968 * 19 18 17 37 37 H 1.08995 * 109.47090 * 30.03930 * 19 18 17 38 38 H 1.08994 * 109.47425 * 150.04284 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4444 0.1238 5 6 3.9908 2.7491 0.5912 6 6 3.5117 2.9889 1.9997 7 1 2.9056 2.2467 2.4977 8 6 3.8463 4.1565 2.6522 9 7 3.4277 4.3661 3.8813 10 14 4.8941 5.4408 1.7906 11 1 4.0142 6.3912 1.0642 12 1 5.6976 6.1803 2.7969 13 1 5.8033 4.7717 0.8258 14 6 4.1399 1.0690 -1.1460 15 6 5.5525 0.6137 -0.8848 16 6 6.6595 1.3780 -0.9786 17 6 7.7623 0.5649 -0.6501 18 6 7.2880 -0.6674 -0.3764 19 6 8.1140 -1.8646 0.0180 20 7 5.9323 -0.6436 -0.5188 21 1 5.3363 -1.3966 -0.3820 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 1.6036 1.9822 0.8405 28 1 1.7535 1.9292 -0.9323 29 1 5.0806 2.7583 0.5716 30 1 3.6091 3.5345 -0.0612 31 1 3.6634 5.1874 4.3405 32 1 4.1534 1.9302 -1.8142 33 1 3.5766 0.2588 -1.6090 34 1 6.6942 2.4221 -1.2526 35 1 8.7977 0.8713 -0.6256 36 1 8.4126 -2.4107 -0.8769 37 1 9.0028 -1.5320 0.5542 38 1 7.5241 -2.5169 0.6617 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209572117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:38 Heat of formation + Delta-G solvation = 34.865010 kcal Electronic energy + Delta-G solvation = -16921.430233 eV Core-core repulsion = 14378.176886 eV Total energy + Delta-G solvation = -2543.253346 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76414 -37.13536 -33.15210 -32.44253 -31.23717 -30.51482 -28.49555 -27.10388 -24.59378 -23.20180 -21.10152 -20.12361 -19.78401 -19.64190 -16.86893 -16.32491 -14.91428 -14.71497 -14.52716 -14.00009 -13.68316 -13.42788 -13.00515 -12.99337 -12.62696 -12.50964 -12.30152 -12.17109 -11.84971 -11.57741 -11.43607 -11.27650 -10.85783 -10.76551 -10.65327 -10.24749 -9.89146 -9.74571 -9.20601 -8.52968 -8.38054 -7.52576 -7.32073 -6.00524 -3.96864 2.62837 3.32703 3.39987 3.41825 3.45601 3.69653 4.47809 4.85196 5.22486 5.32241 5.35704 5.38124 5.43015 5.50747 5.59271 5.63024 5.77667 5.84051 5.91633 5.98976 6.03890 6.18823 6.19786 6.22425 6.41758 6.63406 6.67806 6.75095 6.78538 6.95474 7.06432 7.46122 7.58458 7.68581 7.94074 8.00211 8.11159 8.70078 9.07305 9.61987 11.12653 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.009435 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.058853 B = 2966.875416 C = 4293.364993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.058 3.942 4 N -0.525 5.525 5 C 0.160 3.840 6 C -0.506 4.506 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.872 3.128 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.263 1.263 14 C 0.114 3.886 15 C 0.049 3.951 16 C -0.195 4.195 17 C -0.197 4.197 18 C 0.001 3.999 19 C -0.078 4.078 20 N -0.544 5.544 21 H 0.408 0.592 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.019 0.981 29 H 0.039 0.961 30 H -0.019 1.019 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 -10.507 -10.774 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.070 4.070 4 N -0.249 5.249 5 C 0.034 3.966 6 C -0.544 4.544 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.542 5.542 10 Si 0.700 3.300 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.188 1.188 14 C -0.014 4.014 15 C -0.064 4.064 16 C -0.221 4.221 17 C -0.222 4.222 18 C -0.112 4.112 19 C -0.136 4.136 20 N -0.139 5.139 21 H 0.244 0.756 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.038 0.962 29 H 0.057 0.943 30 H -0.001 1.001 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.929 -10.827 -10.251 15.194 hybrid contribution 0.106 1.181 -0.776 1.417 sum 3.035 -9.646 -11.026 14.961 Atomic orbital electron populations 1.21725 0.96324 1.00851 1.01789 1.21528 0.94762 0.97786 1.01455 1.22111 0.88379 0.95705 1.00785 1.61968 1.04670 1.33405 1.24812 1.20246 0.96590 0.83792 0.95964 1.21020 1.32723 1.03910 0.96749 0.90299 1.24877 0.95733 0.97941 0.94741 1.69897 1.46279 1.26352 1.11647 0.86893 0.81254 0.82053 0.79846 1.20472 1.21223 1.18793 1.20562 0.89260 0.99148 0.92475 1.20159 0.95627 0.84611 1.06045 1.20622 0.91816 0.99168 1.10444 1.20560 0.98585 0.92851 1.10180 1.20185 0.83196 0.97607 1.10213 1.20218 0.98592 0.93940 1.00832 1.41752 1.06585 1.10755 1.54826 0.75593 0.93316 0.92398 0.93275 0.93415 0.91401 0.88880 0.96233 0.94332 1.00105 0.92765 0.93373 0.91339 0.85450 0.85418 0.91800 0.90570 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.79 5.98 -26.73 -0.16 -1.95 16 3 C 0.06 1.09 4.79 -3.82 -0.02 1.07 16 4 N -0.52 -10.89 4.35 -237.51 -1.03 -11.92 16 5 C 0.16 3.96 3.61 -4.97 -0.02 3.94 16 6 C -0.51 -14.56 8.79 -34.44 -0.30 -14.86 16 7 H 0.08 2.46 7.56 -52.49 -0.40 2.07 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 10 Si 0.87 22.06 27.47 -169.99 -4.67 17.39 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 14 C 0.11 1.99 5.35 -4.97 -0.03 1.96 16 15 C 0.05 0.87 6.22 -81.79 -0.51 0.36 16 16 C -0.20 -3.60 9.78 -39.78 -0.39 -3.99 16 17 C -0.20 -3.28 10.76 -39.78 -0.43 -3.70 16 18 C 0.00 0.01 7.16 -81.79 -0.59 -0.58 16 19 C -0.08 -0.84 10.42 36.01 0.38 -0.47 16 20 N -0.54 -8.40 6.07 -5.44 -0.03 -8.43 16 21 H 0.41 5.26 8.96 -40.82 -0.37 4.89 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.65 6.89 -51.93 -0.36 0.29 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.09 2.02 6.58 -51.93 -0.34 1.68 16 28 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 29 H 0.04 1.00 5.70 -51.93 -0.30 0.70 16 30 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.05 0.83 8.00 -51.93 -0.42 0.42 16 33 H 0.07 1.02 6.56 -51.93 -0.34 0.68 16 34 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -31.95 308.06 -8.40 -40.35 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.29 Total: 3.13 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -1.79 Total: -17.89 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.29 Total: -47.62 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.95 -8.40 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209572117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.213 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds