Wall clock time and date at job start Sun Mar 29 2020 21:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46796 * 2 1 4 4 N 1.46899 * 109.46869 * 174.87241 * 3 2 1 5 5 C 1.46905 * 110.99992 * 199.74611 * 4 3 2 6 6 C 1.50696 * 109.46860 * 66.05074 * 5 4 3 7 7 H 1.07993 * 120.00271 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99659 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00048 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00187 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47177 * 90.00347 * 10 8 6 12 12 H 1.48501 * 109.47226 * 210.00480 * 10 8 6 13 13 H 1.48498 * 109.47323 * 330.00681 * 10 8 6 14 14 C 1.46900 * 110.99905 * 75.79343 * 4 3 2 15 15 C 1.50705 * 109.47138 * 199.67328 * 14 4 3 16 16 C 1.34847 * 125.89176 * 264.33820 * 15 14 4 17 17 C 1.40892 * 107.41525 * 179.88627 * 16 15 14 18 18 C 1.34848 * 107.41928 * 0.38202 * 17 16 15 19 19 C 1.50701 * 125.89435 * 179.73573 * 18 17 16 20 20 N 1.36341 * 108.21783 * 359.76720 * 18 17 16 21 21 H 0.97001 * 125.64149 * 180.02562 * 20 18 17 22 22 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47043 * 299.99444 * 1 2 3 24 24 H 1.08997 * 109.47344 * 59.99443 * 1 2 3 25 25 H 1.09000 * 109.46530 * 240.00583 * 2 1 3 26 26 H 1.08999 * 109.47233 * 120.00030 * 2 1 3 27 27 H 1.08997 * 109.47325 * 54.87668 * 3 2 1 28 28 H 1.09000 * 109.47584 * 294.87489 * 3 2 1 29 29 H 1.08999 * 109.46850 * 186.04785 * 5 4 3 30 30 H 1.08999 * 109.47124 * 306.04706 * 5 4 3 31 31 H 0.96996 * 120.00117 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.47308 * 79.67639 * 14 4 3 33 33 H 1.09000 * 109.47148 * 319.67700 * 14 4 3 34 34 H 1.08001 * 126.29146 * 0.02877 * 16 15 14 35 35 H 1.08005 * 126.29349 * 180.17338 * 17 16 15 36 36 H 1.09003 * 109.46755 * 270.03968 * 19 18 17 37 37 H 1.08995 * 109.47090 * 30.03930 * 19 18 17 38 38 H 1.08994 * 109.47425 * 150.04284 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4444 0.1238 5 6 3.9908 2.7491 0.5912 6 6 3.5117 2.9889 1.9997 7 1 2.9056 2.2467 2.4977 8 6 3.8463 4.1565 2.6522 9 7 3.4277 4.3661 3.8813 10 14 4.8941 5.4408 1.7906 11 1 4.0142 6.3912 1.0642 12 1 5.6976 6.1803 2.7969 13 1 5.8033 4.7717 0.8258 14 6 4.1399 1.0690 -1.1460 15 6 5.5525 0.6137 -0.8848 16 6 6.6595 1.3780 -0.9786 17 6 7.7623 0.5649 -0.6501 18 6 7.2880 -0.6674 -0.3764 19 6 8.1140 -1.8646 0.0180 20 7 5.9323 -0.6436 -0.5188 21 1 5.3363 -1.3966 -0.3820 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8900 27 1 1.6036 1.9822 0.8405 28 1 1.7535 1.9292 -0.9323 29 1 5.0806 2.7583 0.5716 30 1 3.6091 3.5345 -0.0612 31 1 3.6634 5.1874 4.3405 32 1 4.1534 1.9302 -1.8142 33 1 3.5766 0.2588 -1.6090 34 1 6.6942 2.4221 -1.2526 35 1 8.7977 0.8713 -0.6256 36 1 8.4126 -2.4107 -0.8769 37 1 9.0028 -1.5320 0.5542 38 1 7.5241 -2.5169 0.6617 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209572117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:37 Heat of formation + Delta-G solvation = 13.785583 kcal Electronic energy + Delta-G solvation = -16922.344305 eV Core-core repulsion = 14378.176886 eV Total energy + Delta-G solvation = -2544.167419 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.01084 -38.71622 -34.90670 -34.13542 -32.50256 -31.77779 -30.21532 -28.52320 -26.04193 -24.74403 -22.67591 -21.58502 -21.13714 -20.93829 -18.99758 -17.68550 -16.61413 -16.34674 -15.94157 -15.38768 -15.17601 -14.81691 -14.52803 -14.31833 -14.10832 -13.82100 -13.79511 -13.39283 -13.17889 -12.96219 -12.67250 -12.62829 -12.56360 -12.41607 -12.12469 -11.83310 -11.68061 -11.39848 -11.30183 -10.78557 -9.66728 -9.08251 -8.66921 -8.28941 -6.30425 1.30914 1.34168 1.37557 1.45862 2.09976 2.33591 2.52934 3.04862 3.33252 4.09102 4.09700 4.20001 4.22998 4.33726 4.49476 4.52385 4.57901 4.63553 4.72330 4.82667 4.86573 4.93199 4.96586 5.05978 5.07822 5.17239 5.22792 5.38071 5.41005 5.46672 5.52771 5.57705 5.98114 6.19861 6.29103 6.42148 6.63711 6.74913 6.89712 7.32664 8.87657 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.009435 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.058853 B = 2966.875416 C = 4293.364993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.059 3.941 4 N -0.537 5.537 5 C 0.174 3.826 6 C -0.509 4.509 7 H 0.038 0.962 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.940 3.060 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.253 1.253 14 C 0.119 3.881 15 C 0.029 3.971 16 C -0.221 4.221 17 C -0.225 4.225 18 C 0.011 3.989 19 C -0.076 4.076 20 N -0.539 5.539 21 H 0.420 0.580 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.029 0.971 30 H -0.018 1.018 31 H 0.266 0.734 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 -11.804 -12.636 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.069 4.069 4 N -0.261 5.261 5 C 0.047 3.953 6 C -0.548 4.548 7 H 0.056 0.944 8 C -0.187 4.187 9 N -0.589 5.589 10 Si 0.764 3.236 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.177 1.177 14 C -0.009 4.009 15 C -0.085 4.085 16 C -0.247 4.247 17 C -0.250 4.250 18 C -0.103 4.103 19 C -0.134 4.134 20 N -0.136 5.136 21 H 0.258 0.742 22 H 0.090 0.910 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.047 0.953 30 H -0.001 1.001 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.666 -12.153 -12.129 17.557 hybrid contribution -0.152 1.488 -0.169 1.505 sum 3.514 -10.665 -12.298 16.654 Atomic orbital electron populations 1.21699 0.94606 1.02347 1.01646 1.21444 0.96180 0.95073 1.01842 1.22111 0.87158 0.97960 0.99665 1.61871 1.05922 1.30941 1.27359 1.19911 0.95768 0.86039 0.93569 1.21242 1.31853 1.03000 0.98677 0.94385 1.25769 0.97179 1.00381 0.95411 1.70042 1.48038 1.27362 1.13445 0.85815 0.79673 0.79212 0.78939 1.19093 1.20673 1.17658 1.20596 0.89418 1.00159 0.90760 1.20180 0.95499 0.85610 1.07239 1.20812 0.93164 0.99254 1.11424 1.20851 0.99051 0.93554 1.11513 1.20849 0.83200 0.98478 1.07731 1.20357 0.98332 0.92516 1.02183 1.41801 1.07138 1.10467 1.54157 0.74162 0.90977 0.94011 0.92009 0.90855 0.93033 0.92920 0.94772 0.95255 1.00083 0.92521 0.93202 0.88321 0.86390 0.84101 0.89534 0.89641 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.11 -3.11 5.98 30.59 0.18 -2.93 16 3 C 0.06 2.19 4.79 86.30 0.41 2.60 16 4 N -0.54 -22.14 4.35 -905.35 -3.93 -26.08 16 5 C 0.17 8.68 3.61 85.55 0.31 8.98 16 6 C -0.51 -30.31 8.79 25.60 0.22 -30.08 16 7 H 0.04 2.51 7.56 -2.91 -0.02 2.49 16 8 C 0.01 0.58 5.47 84.65 0.46 1.05 16 9 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 10 Si 0.94 45.95 27.47 68.60 1.88 47.83 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 13 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 14 C 0.12 3.94 5.35 85.56 0.46 4.40 16 15 C 0.03 0.98 6.22 41.08 0.26 1.24 16 16 C -0.22 -8.04 9.78 22.14 0.22 -7.82 16 17 C -0.23 -7.23 10.76 22.14 0.24 -6.99 16 18 C 0.01 0.31 7.16 41.08 0.29 0.60 16 19 C -0.08 -1.40 10.42 71.24 0.74 -0.66 16 20 N -0.54 -15.58 6.07 -171.11 -1.04 -16.61 16 21 H 0.42 9.78 8.96 -92.71 -0.83 8.94 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.76 6.89 -2.39 -0.02 1.74 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 2.38 6.58 -2.39 -0.02 2.36 16 28 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 29 H 0.03 1.52 5.70 -2.39 -0.01 1.51 16 30 H -0.02 -0.91 7.55 -2.39 -0.02 -0.93 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.05 1.65 8.00 -2.39 -0.02 1.63 16 33 H 0.10 2.64 6.56 -2.39 -0.02 2.62 16 34 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.89 308.06 1.86 -69.03 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.14 Total: 18.61 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 4.51 Total: -32.46 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -4.67 Total: -103.02 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.83 kcal Total: -70.89 1.86 -69.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209572117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.817 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds