Wall clock time and date at job start Sun Mar 29 2020 21:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 C 1.52995 * 109.47046 * 184.75058 * 3 2 1 5 5 N 1.46500 * 109.47173 * 184.82027 * 4 3 2 6 6 C 1.36937 * 119.99954 * 94.57557 * 5 4 3 7 7 H 1.08007 * 119.99987 * 37.96419 * 6 5 4 8 8 C 1.38809 * 120.00189 * 217.68777 * 6 5 4 9 9 N 1.31616 * 119.99944 * 211.89641 * 8 6 5 10 10 Si 1.86797 * 119.99813 * 31.89233 * 8 6 5 11 11 H 1.48501 * 109.47213 * 85.99044 * 10 8 6 12 12 H 1.48504 * 109.47306 * 205.99350 * 10 8 6 13 13 H 1.48500 * 109.47341 * 325.99511 * 10 8 6 14 14 C 1.46498 * 119.99725 * 274.57601 * 5 4 3 15 15 C 1.50702 * 109.47110 * 275.33325 * 14 5 4 16 16 C 1.34849 * 125.88869 * 264.68990 * 15 14 5 17 17 C 1.40899 * 107.41340 * 179.88754 * 16 15 14 18 18 C 1.34855 * 107.41313 * 0.37948 * 17 16 15 19 19 C 1.50702 * 125.88643 * 179.72855 * 18 17 16 20 20 N 1.36332 * 108.22202 * 359.77137 * 18 17 16 21 21 H 0.97003 * 125.63505 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46734 * 299.99924 * 1 2 3 24 24 H 1.08994 * 109.47048 * 60.00334 * 1 2 3 25 25 H 1.09005 * 109.46713 * 239.99518 * 2 1 3 26 26 H 1.09003 * 109.46875 * 119.99945 * 2 1 3 27 27 H 1.08997 * 109.46947 * 64.75115 * 3 2 1 28 28 H 1.09001 * 109.46681 * 304.75209 * 3 2 1 29 29 H 1.09002 * 109.47320 * 64.81920 * 4 3 2 30 30 H 1.09004 * 109.46831 * 304.82318 * 4 3 2 31 31 H 0.97006 * 119.99388 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47302 * 35.33822 * 14 5 4 33 33 H 1.09005 * 109.46754 * 155.33731 * 14 5 4 34 34 H 1.07998 * 126.29372 * 0.03554 * 16 15 14 35 35 H 1.07996 * 126.29423 * 180.17647 * 17 16 15 36 36 H 1.08995 * 109.47722 * 270.05097 * 19 18 17 37 37 H 1.09012 * 109.46975 * 30.04899 * 19 18 17 38 38 H 1.09003 * 109.47048 * 150.04213 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5654 1.4441 -0.1195 5 7 4.0628 2.8172 -0.0039 6 6 4.4758 3.2959 1.2107 7 1 5.0121 2.6511 1.8913 8 6 4.2103 4.6115 1.5651 9 7 5.0510 5.2677 2.3363 10 14 2.6600 5.4505 0.9471 11 1 1.5333 5.1474 1.8658 12 1 2.8776 6.9187 0.8981 13 1 2.3365 4.9523 -0.4139 14 6 4.1183 3.6782 -1.1879 15 6 5.4016 3.4221 -1.9355 16 6 6.5431 4.1292 -1.8118 17 6 7.4904 3.5567 -2.6836 18 6 6.8889 2.5268 -3.3130 19 6 7.5243 1.6282 -4.3425 20 7 5.6067 2.4393 -2.8580 21 1 4.9492 1.7856 -3.1431 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.7479 1.9311 0.9295 28 1 1.6089 1.9803 -0.8444 29 1 3.8545 1.0331 -1.0867 30 1 3.9928 0.8346 0.6767 31 1 4.8656 6.1873 2.5836 32 1 3.2701 3.4593 -1.8365 33 1 4.0798 4.7230 -0.8795 34 1 6.7027 4.9770 -1.1619 35 1 8.5097 3.8845 -2.8245 36 1 7.3695 2.0479 -5.3364 37 1 8.5932 1.5478 -4.1445 38 1 7.0699 0.6387 -4.2911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209578630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:31 Heat of formation + Delta-G solvation = 48.419571 kcal Electronic energy + Delta-G solvation = -17049.089822 eV Core-core repulsion = 14506.424246 eV Total energy + Delta-G solvation = -2542.665576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45470 -36.51002 -34.15126 -31.78457 -31.11197 -30.23932 -28.73375 -27.00786 -24.18716 -23.50026 -21.13433 -20.18090 -19.74787 -19.31751 -17.12986 -15.74298 -15.17368 -14.78328 -14.45317 -13.82924 -13.66895 -13.23295 -13.04559 -12.80680 -12.52546 -12.39343 -12.16282 -12.07760 -11.91385 -11.73788 -11.19852 -10.90391 -10.74666 -10.69394 -10.56118 -10.35966 -10.13434 -9.91813 -9.49010 -8.45253 -8.12298 -7.16212 -6.84464 -6.04165 -3.35128 2.88903 3.36577 3.48438 3.51337 3.74471 3.92958 4.55209 5.05355 5.19754 5.29474 5.38300 5.46863 5.48986 5.55106 5.72911 5.82565 5.88642 6.00379 6.03216 6.06686 6.17805 6.19922 6.23387 6.26478 6.43684 6.49864 6.54832 6.70026 6.83820 6.96893 7.03212 7.15323 7.79554 7.91104 8.03536 8.27737 8.42368 8.98929 9.72168 10.14194 11.11406 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.010104 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.457017 B = 2770.630701 C = 4104.773814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.143 4.143 4 C 0.152 3.848 5 N -0.592 5.592 6 C -0.273 4.273 7 H 0.074 0.926 8 C 0.047 3.953 9 N -0.879 5.879 10 Si 0.849 3.151 11 H -0.288 1.288 12 H -0.295 1.295 13 H -0.262 1.262 14 C 0.208 3.792 15 C 0.028 3.972 16 C -0.188 4.188 17 C -0.197 4.197 18 C -0.017 4.017 19 C -0.074 4.074 20 N -0.556 5.556 21 H 0.402 0.598 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 -7.663 -10.665 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.183 4.183 4 C 0.026 3.974 5 N -0.312 5.312 6 C -0.401 4.401 7 H 0.091 0.909 8 C -0.155 4.155 9 N -0.518 5.518 10 Si 0.676 3.324 11 H -0.216 1.216 12 H -0.222 1.222 13 H -0.187 1.187 14 C 0.081 3.919 15 C -0.087 4.087 16 C -0.212 4.212 17 C -0.223 4.223 18 C -0.129 4.129 19 C -0.132 4.132 20 N -0.152 5.152 21 H 0.237 0.763 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.584 -7.594 -10.571 13.270 hybrid contribution -1.123 0.329 -0.240 1.195 sum -3.707 -7.265 -10.811 13.543 Atomic orbital electron populations 1.21775 0.96678 1.00692 1.01622 1.21496 0.95138 0.98064 1.01273 1.22256 0.99153 0.94885 1.01981 1.20899 0.91091 0.87184 0.98220 1.44110 1.72960 1.10106 1.04069 1.18628 1.30963 0.96631 0.93860 0.90855 1.25440 0.97142 0.96586 0.96306 1.70046 1.33243 1.10201 1.38347 0.87452 0.87225 0.78108 0.79639 1.21568 1.22152 1.18697 1.19945 0.88640 0.96462 0.86874 1.21861 1.00725 0.91810 0.94307 1.20673 0.92953 1.03867 1.03750 1.20588 0.99454 0.99588 1.02626 1.20120 0.86082 1.02541 1.04109 1.20167 1.00307 0.96851 0.95888 1.41930 1.11096 1.27730 1.34435 0.76326 0.93449 0.92855 0.93190 0.92829 0.92246 0.91570 0.93363 0.95446 0.92803 0.92697 0.94394 0.90167 0.85106 0.85840 0.92064 0.90908 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.15 2.96 5.69 -4.04 -0.02 2.94 16 5 N -0.59 -13.78 2.03 -174.61 -0.35 -14.14 16 6 C -0.27 -7.52 9.78 -15.06 -0.15 -7.67 16 7 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 8 C 0.05 1.34 5.04 -17.43 -0.09 1.25 16 9 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 10 Si 0.85 21.15 26.49 -169.99 -4.50 16.64 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.26 -6.11 5.49 56.52 0.31 -5.80 16 14 C 0.21 4.54 4.39 -5.19 -0.02 4.52 16 15 C 0.03 0.58 6.74 -81.79 -0.55 0.02 16 16 C -0.19 -4.05 10.77 -39.78 -0.43 -4.48 16 17 C -0.20 -3.68 10.77 -39.78 -0.43 -4.11 16 18 C -0.02 -0.28 7.16 -81.79 -0.59 -0.87 16 19 C -0.07 -0.89 10.42 36.01 0.38 -0.51 16 20 N -0.56 -9.59 6.07 -5.44 -0.03 -9.62 16 21 H 0.40 5.80 8.96 -40.82 -0.37 5.43 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 30 H 0.05 1.08 8.00 -51.93 -0.42 0.67 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.04 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.08 1.91 4.45 -51.93 -0.23 1.68 16 34 H 0.13 2.98 8.06 -52.49 -0.42 2.56 16 35 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -30.33 311.93 -7.83 -38.16 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.58 Total: 4.77 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.84 Total: -14.90 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.39 Total: -49.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.50 Total: 16.64 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.33 -7.83 -38.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209578630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.580 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds