Wall clock time and date at job start Sun Mar 29 2020 21:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99940 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99981 * 3 2 1 5 5 H 1.48503 * 109.47009 * 29.99369 * 3 2 1 6 6 H 1.48495 * 109.47052 * 149.99452 * 3 2 1 7 7 C 1.37874 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46976 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42900 * 109.47477 * 180.02562 * 12 11 10 14 14 C 1.42898 * 114.00068 * 179.97438 * 13 12 11 15 15 H 1.08996 * 110.52411 * 31.33159 * 14 13 12 16 16 C 1.54832 * 110.58221 * 268.54166 * 14 13 12 17 17 C 1.56199 * 103.82036 * 241.22416 * 16 14 13 18 18 H 1.09001 * 116.29117 * 164.08578 * 17 16 14 19 19 C 1.53324 * 104.09503 * 293.57361 * 17 16 14 20 20 C 1.31790 * 108.57011 * 69.86898 * 19 17 16 21 21 C 1.53355 * 108.42814 * 0.05788 * 20 19 17 22 22 H 1.09003 * 116.33265 * 160.59391 * 21 20 19 23 23 C 1.57261 * 99.79813 * 33.33730 * 21 20 19 24 24 H 0.97000 * 120.00185 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46834 * 59.99986 * 9 7 2 26 26 H 1.08989 * 109.47261 * 299.99923 * 9 7 2 27 27 H 1.09000 * 109.47359 * 60.00664 * 10 9 7 28 28 H 1.09002 * 109.47734 * 300.00080 * 10 9 7 29 29 H 1.09000 * 109.47575 * 60.00130 * 11 10 9 30 30 H 1.09001 * 109.47456 * 299.99991 * 11 10 9 31 31 H 1.08994 * 109.47487 * 59.99519 * 12 11 10 32 32 H 1.09002 * 109.47223 * 299.99826 * 12 11 10 33 33 H 1.09002 * 110.58185 * 359.85213 * 16 14 13 34 34 H 1.08997 * 110.58093 * 122.59829 * 16 14 13 35 35 H 1.08004 * 125.63761 * 249.93132 * 19 17 16 36 36 H 1.08004 * 125.78492 * 180.02562 * 20 19 17 37 37 H 1.09001 * 112.51957 * 66.63320 * 23 21 20 38 38 H 1.08999 * 112.52408 * 194.49951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4746 -6.1499 0.0005 13 8 1.7602 -7.3875 -0.0007 14 6 2.6002 -8.5436 -0.0008 15 1 3.5298 -8.3405 0.5308 16 6 2.8913 -9.0048 -1.4499 17 6 2.2931 -10.4464 -1.5099 18 1 2.1435 -10.8661 -2.5047 19 6 3.1754 -11.2569 -0.5530 20 6 2.9276 -10.8643 0.6805 21 6 1.8603 -9.7641 0.6338 22 1 1.3220 -9.5730 1.5622 23 6 1.0195 -10.2589 -0.5996 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 2.8720 -3.6044 0.8906 28 1 2.8721 -3.6043 -0.8894 29 1 0.8540 -5.0446 -0.8903 30 1 0.8534 -5.0451 0.8896 31 1 3.1007 -6.0923 0.8909 32 1 3.1019 -6.0922 -0.8890 33 1 2.3925 -8.3528 -2.1670 34 1 3.9649 -9.0273 -1.6364 35 1 3.8820 -12.0205 -0.8429 36 1 3.3963 -11.2521 1.5729 37 1 0.5047 -11.1995 -0.4036 38 1 0.3443 -9.4921 -0.9793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:59 Heat of formation + Delta-G solvation = -36.851340 kcal Electronic energy + Delta-G solvation = -16135.156676 eV Core-core repulsion = 13556.500724 eV Total energy + Delta-G solvation = -2578.655952 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80548 -37.28230 -34.50081 -32.31338 -30.26813 -29.05550 -28.21416 -27.40506 -24.67359 -21.75589 -21.24741 -20.57321 -19.94666 -18.13688 -16.95921 -16.36272 -16.17617 -15.51300 -15.16555 -14.46384 -13.92524 -13.62568 -12.97494 -12.74962 -12.39928 -11.83339 -11.76466 -11.71594 -11.54821 -11.32715 -11.18590 -11.01391 -10.86899 -10.66677 -10.55806 -10.49146 -10.34422 -9.65871 -9.50387 -9.28642 -9.06218 -9.00427 -8.31698 -5.96706 -3.99142 1.95129 3.33694 3.39659 3.43132 3.76496 4.35279 4.37360 4.45593 4.49787 4.80127 5.00807 5.10343 5.15598 5.28967 5.37668 5.38705 5.42719 5.56086 5.66215 5.73762 5.78270 5.81962 5.89683 5.95068 6.03273 6.14005 6.16564 6.24565 6.51215 6.69753 6.81459 6.95181 7.13757 7.45308 7.71905 7.87175 8.04112 8.46356 9.08230 9.64651 11.14676 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.072576 B = 0.003375 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.707464 B = 8295.167365 C = 8388.282142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.063 3.937 13 O -0.377 6.377 14 C 0.086 3.914 15 H 0.063 0.937 16 C -0.144 4.144 17 C -0.079 4.079 18 H 0.101 0.899 19 C -0.163 4.163 20 C -0.169 4.169 21 C -0.071 4.071 22 H 0.106 0.894 23 C -0.115 4.115 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 -22.215 -0.904 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.013 4.013 13 O -0.297 6.297 14 C 0.028 3.972 15 H 0.081 0.919 16 C -0.181 4.181 17 C -0.097 4.097 18 H 0.119 0.881 19 C -0.181 4.181 20 C -0.187 4.187 21 C -0.090 4.090 22 H 0.124 0.876 23 C -0.153 4.153 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.130 -22.080 -0.902 22.686 hybrid contribution 0.914 0.960 0.017 1.326 sum 6.044 -21.119 -0.884 21.985 Atomic orbital electron populations 1.69972 1.06048 1.26547 1.50949 1.25037 0.94854 0.99249 0.95405 0.86599 0.79837 0.83515 0.78072 1.20685 1.21227 1.19900 1.21279 0.93024 0.91168 1.50440 0.92734 1.19091 0.93998 0.91182 0.97326 1.21577 0.99182 0.93523 1.00258 1.21635 0.98078 0.92919 1.02710 1.22723 0.95396 0.83676 0.99531 1.87916 1.33662 1.13247 1.94826 1.23260 0.93234 0.85853 0.94852 0.91897 1.23230 1.00772 0.96213 0.97927 1.22985 0.94584 0.94334 0.97831 0.88071 1.24164 0.99986 0.98825 0.95152 1.24053 0.99470 0.97554 0.97619 1.22947 0.95083 0.92338 0.98602 0.87621 1.24116 0.96418 1.00866 0.93861 0.93024 0.96548 0.96516 0.93370 0.93385 0.91737 0.91720 0.93729 0.93776 0.90122 0.91397 0.85676 0.85466 0.90952 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -2.10 5.58 -26.73 -0.15 -2.25 16 12 C 0.06 0.96 5.80 37.16 0.22 1.18 16 13 O -0.38 -5.67 10.02 -35.23 -0.35 -6.02 16 14 C 0.09 1.05 2.73 -24.05 -0.07 0.98 16 15 H 0.06 0.75 7.81 -51.93 -0.41 0.34 16 16 C -0.14 -1.55 6.06 -24.05 -0.15 -1.70 16 17 C -0.08 -0.74 5.29 -86.19 -0.46 -1.19 16 18 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 19 C -0.16 -1.41 10.13 -34.88 -0.35 -1.77 16 20 C -0.17 -1.53 10.14 -34.86 -0.35 -1.89 16 21 C -0.07 -0.76 4.99 -86.40 -0.43 -1.19 16 22 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 23 C -0.12 -1.16 6.67 -21.86 -0.15 -1.31 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.46 8.14 -51.94 -0.42 0.04 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 34 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 309.99 15.07 4.67 4.67 Total: -1.00 -30.65 309.99 -9.24 -39.89 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.70 Total: -3.77 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -2.57 Total: -24.99 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.35 Total: -6.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.65 -9.24 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.038 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds