Wall clock time and date at job start Sun Mar 29 2020 21:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99940 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99981 * 3 2 1 5 5 H 1.48503 * 109.47009 * 29.99369 * 3 2 1 6 6 H 1.48495 * 109.47052 * 149.99452 * 3 2 1 7 7 C 1.37874 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46976 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42900 * 109.47477 * 180.02562 * 12 11 10 14 14 C 1.42898 * 114.00068 * 179.97438 * 13 12 11 15 15 H 1.08996 * 110.52411 * 31.33159 * 14 13 12 16 16 C 1.54832 * 110.58221 * 268.54166 * 14 13 12 17 17 C 1.56199 * 103.82036 * 241.22416 * 16 14 13 18 18 H 1.09001 * 116.29117 * 164.08578 * 17 16 14 19 19 C 1.53324 * 104.09503 * 293.57361 * 17 16 14 20 20 C 1.31790 * 108.57011 * 69.86898 * 19 17 16 21 21 C 1.53355 * 108.42814 * 0.05788 * 20 19 17 22 22 H 1.09003 * 116.33265 * 160.59391 * 21 20 19 23 23 C 1.57261 * 99.79813 * 33.33730 * 21 20 19 24 24 H 0.97000 * 120.00185 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46834 * 59.99986 * 9 7 2 26 26 H 1.08989 * 109.47261 * 299.99923 * 9 7 2 27 27 H 1.09000 * 109.47359 * 60.00664 * 10 9 7 28 28 H 1.09002 * 109.47734 * 300.00080 * 10 9 7 29 29 H 1.09000 * 109.47575 * 60.00130 * 11 10 9 30 30 H 1.09001 * 109.47456 * 299.99991 * 11 10 9 31 31 H 1.08994 * 109.47487 * 59.99519 * 12 11 10 32 32 H 1.09002 * 109.47223 * 299.99826 * 12 11 10 33 33 H 1.09002 * 110.58185 * 359.85213 * 16 14 13 34 34 H 1.08997 * 110.58093 * 122.59829 * 16 14 13 35 35 H 1.08004 * 125.63761 * 249.93132 * 19 17 16 36 36 H 1.08004 * 125.78492 * 180.02562 * 20 19 17 37 37 H 1.09001 * 112.51957 * 66.63320 * 23 21 20 38 38 H 1.08999 * 112.52408 * 194.49951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 6 2.4746 -6.1499 0.0005 13 8 1.7602 -7.3875 -0.0007 14 6 2.6002 -8.5436 -0.0008 15 1 3.5298 -8.3405 0.5308 16 6 2.8913 -9.0048 -1.4499 17 6 2.2931 -10.4464 -1.5099 18 1 2.1435 -10.8661 -2.5047 19 6 3.1754 -11.2569 -0.5530 20 6 2.9276 -10.8643 0.6805 21 6 1.8603 -9.7641 0.6338 22 1 1.3220 -9.5730 1.5622 23 6 1.0195 -10.2589 -0.5996 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 2.8720 -3.6044 0.8906 28 1 2.8721 -3.6043 -0.8894 29 1 0.8540 -5.0446 -0.8903 30 1 0.8534 -5.0451 0.8896 31 1 3.1007 -6.0923 0.8909 32 1 3.1019 -6.0922 -0.8890 33 1 2.3925 -8.3528 -2.1670 34 1 3.9649 -9.0273 -1.6364 35 1 3.8820 -12.0205 -0.8429 36 1 3.3963 -11.2521 1.5729 37 1 0.5047 -11.1995 -0.4036 38 1 0.3443 -9.4921 -0.9793 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:59 Heat of formation + Delta-G solvation = -52.878560 kcal Electronic energy + Delta-G solvation = -16135.851668 eV Core-core repulsion = 13556.500724 eV Total energy + Delta-G solvation = -2579.350944 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61636 -38.44450 -36.31361 -34.30613 -31.25135 -30.40808 -29.28098 -28.31834 -26.52632 -23.45079 -22.18702 -21.76785 -21.24813 -18.86709 -18.43366 -17.83325 -17.33454 -16.76698 -16.48858 -16.11915 -15.28299 -14.89297 -14.44690 -13.91586 -13.71448 -13.67801 -13.09157 -12.94274 -12.71640 -12.46537 -12.36745 -12.30876 -12.15697 -12.12033 -12.02518 -11.65366 -11.46636 -11.39384 -11.31219 -11.06215 -10.56783 -10.53969 -9.81649 -8.20312 -6.32200 1.26965 1.39870 1.41828 1.53017 2.40525 2.71169 3.12509 3.55490 3.56986 3.66110 4.04002 4.10196 4.14984 4.19863 4.28473 4.39936 4.43406 4.52051 4.59500 4.62243 4.71834 4.83704 4.88970 4.92384 5.03543 5.08858 5.14847 5.17265 5.24524 5.27392 5.28219 5.49633 5.52347 5.74350 5.85025 6.03350 6.23794 6.34429 6.85203 7.37272 8.91813 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.072576 B = 0.003375 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.707464 B = 8295.167365 C = 8388.282142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.108 4.108 12 C 0.072 3.928 13 O -0.395 6.395 14 C 0.077 3.923 15 H 0.067 0.933 16 C -0.144 4.144 17 C -0.077 4.077 18 H 0.117 0.883 19 C -0.157 4.157 20 C -0.174 4.174 21 C -0.078 4.078 22 H 0.101 0.899 23 C -0.118 4.118 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.083 0.917 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.390 -23.120 -1.032 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.146 4.146 12 C -0.004 4.004 13 O -0.315 6.315 14 C 0.019 3.981 15 H 0.085 0.915 16 C -0.181 4.181 17 C -0.095 4.095 18 H 0.135 0.865 19 C -0.175 4.175 20 C -0.192 4.192 21 C -0.097 4.097 22 H 0.119 0.881 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.102 0.898 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.059 -23.006 -1.031 24.087 hybrid contribution 0.256 1.206 0.055 1.234 sum 7.316 -21.800 -0.976 23.016 Atomic orbital electron populations 1.70113 1.07920 1.27823 1.51696 1.26048 0.95811 1.03582 0.94689 0.85400 0.78651 0.78160 0.78549 1.19681 1.20725 1.18570 1.21734 0.93655 0.92370 1.50555 0.91953 1.19022 0.94509 0.93226 0.94759 1.21357 0.98045 0.92832 1.00976 1.21452 0.98276 0.92959 1.01924 1.22499 0.94321 0.83030 1.00540 1.87882 1.34765 1.13821 1.95055 1.23515 0.93235 0.85215 0.96086 0.91530 1.23211 1.01334 0.96982 0.96602 1.23053 0.94024 0.93658 0.98736 0.86514 1.24338 0.99788 0.98807 0.94565 1.24130 0.99245 0.97184 0.98627 1.23004 0.95786 0.92369 0.98518 0.88085 1.24121 0.96636 1.00795 0.93987 0.92745 0.99169 0.99138 0.92558 0.92561 0.92581 0.92554 0.92656 0.92756 0.91410 0.90411 0.83502 0.83856 0.89827 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.11 -3.96 5.58 30.59 0.17 -3.79 16 12 C 0.07 2.16 5.80 71.98 0.42 2.57 16 13 O -0.40 -11.75 10.02 -148.98 -1.49 -13.24 16 14 C 0.08 1.79 2.73 32.33 0.09 1.88 16 15 H 0.07 1.48 7.81 -2.39 -0.02 1.46 16 16 C -0.14 -2.90 6.06 32.33 0.20 -2.70 16 17 C -0.08 -1.28 5.29 -7.92 -0.04 -1.32 16 18 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.16 -2.28 10.13 25.78 0.26 -2.02 16 20 C -0.17 -2.76 10.14 25.79 0.26 -2.50 16 21 C -0.08 -1.59 4.99 -8.06 -0.04 -1.63 16 22 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 23 C -0.12 -2.27 6.67 33.75 0.22 -2.04 16 24 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 25 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 1.53 8.11 -2.39 -0.02 1.51 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.54 8.01 -2.39 -0.02 1.52 16 34 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 35 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.79 309.99 4.35 -61.44 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.99 Total: 8.33 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 2.54 Total: -45.38 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.28 Total: -58.04 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.49 Total: -13.24 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.79 4.35 -61.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.562 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds