Wall clock time and date at job start Sun Mar 29 2020 21:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08998 * 110.05599 * 291.67341 * 3 2 1 5 5 C 1.54267 * 110.02878 * 170.25689 * 3 2 1 6 6 C 1.54891 * 104.19324 * 217.10662 * 5 3 2 7 7 C 1.54888 * 102.75120 * 37.94011 * 6 5 3 8 8 C 1.53876 * 110.03315 * 53.09169 * 3 2 1 9 9 H 1.08997 * 110.02757 * 238.61459 * 8 3 2 10 10 O 1.42904 * 110.03212 * 359.97438 * 8 3 2 11 11 C 1.42898 * 113.99774 * 209.99980 * 10 8 3 12 12 C 1.52995 * 109.46941 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47386 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47386 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47055 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00068 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99964 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00086 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47193 * 90.00109 * 19 17 15 21 21 H 1.48500 * 109.47407 * 210.00250 * 19 17 15 22 22 H 1.48505 * 109.47114 * 330.00338 * 19 17 15 23 23 H 4.19663 * 14.89672 * 359.97438 * 4 2 1 24 24 H 1.09004 * 110.48597 * 335.78301 * 5 3 2 25 25 H 1.08994 * 110.48679 * 98.42827 * 5 3 2 26 26 H 1.09005 * 110.75269 * 279.62515 * 6 5 3 27 27 H 1.08999 * 110.75712 * 156.25949 * 6 5 3 28 28 H 1.09000 * 110.48622 * 203.37816 * 7 6 5 29 29 H 1.08999 * 110.48451 * 80.73628 * 7 6 5 30 30 H 1.08993 * 109.47318 * 300.00106 * 11 10 8 31 31 H 1.09006 * 109.46821 * 60.00450 * 11 10 8 32 32 H 1.08996 * 109.47815 * 300.00580 * 12 11 10 33 33 H 1.09006 * 109.46810 * 60.00670 * 12 11 10 34 34 H 1.08996 * 109.47303 * 300.01121 * 13 12 11 35 35 H 1.09006 * 109.46413 * 60.00654 * 13 12 11 36 36 H 1.08996 * 109.47815 * 300.00807 * 14 13 12 37 37 H 1.09006 * 109.46668 * 60.00362 * 14 13 12 38 38 H 0.97004 * 119.99631 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0200 -0.3773 0.9515 5 6 3.1737 1.4294 -0.2453 6 6 4.4290 1.2240 -1.1291 7 6 4.0034 0.0642 -2.0633 8 6 3.1735 -0.8673 -1.1559 9 1 3.8028 -1.6669 -0.7653 10 8 2.0801 -1.4206 -1.8911 11 6 2.3639 -2.6867 -2.4899 12 6 1.1293 -3.1812 -3.2462 13 6 1.4332 -4.5365 -3.8880 14 6 0.1989 -5.0307 -4.6448 15 6 0.4981 -6.3659 -5.2763 16 1 1.4712 -6.8170 -5.1502 17 6 -0.4705 -7.0116 -6.0153 18 7 -1.6554 -6.4619 -6.1694 19 14 -0.0999 -8.6669 -6.7975 20 1 -0.4525 -9.7530 -5.8482 21 1 -0.8987 -8.8170 -8.0404 22 1 1.3462 -8.7465 -7.1259 23 1 -1.0500 0.0003 0.0006 24 1 2.4292 2.0257 -0.7727 25 1 3.4448 1.9031 0.6982 26 1 5.2865 0.9355 -0.5211 27 1 4.6475 2.1235 -1.7048 28 1 4.8800 -0.4582 -2.4465 29 1 3.3929 0.4401 -2.8843 30 1 3.1977 -2.5816 -3.1840 31 1 2.6258 -3.4053 -1.7133 32 1 0.2957 -3.2863 -2.5519 33 1 0.8669 -2.4626 -4.0228 34 1 2.2667 -4.4310 -4.5823 35 1 1.6958 -5.2553 -3.1117 36 1 -0.6349 -5.1362 -3.9508 37 1 -0.0633 -4.3118 -5.4211 38 1 -2.3369 -6.9164 -6.6889 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:22 Heat of formation + Delta-G solvation = -27.610464 kcal Electronic energy + Delta-G solvation = -16045.272998 eV Core-core repulsion = 13467.017761 eV Total energy + Delta-G solvation = -2578.255237 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34644 -36.50200 -34.36882 -32.85169 -32.24561 -28.99451 -28.63933 -27.45533 -24.62766 -21.72531 -21.35527 -20.98841 -19.98417 -18.12276 -16.58021 -16.18988 -15.82225 -15.57549 -14.75856 -14.41607 -14.01760 -13.80959 -13.38316 -12.62000 -12.40325 -12.13794 -12.03070 -11.65180 -11.39523 -11.30658 -11.05488 -11.00582 -10.82708 -10.62628 -10.50803 -10.35468 -10.02636 -9.97500 -9.63594 -9.31909 -9.27680 -9.01277 -8.31165 -5.96188 -3.98572 2.97096 3.01032 3.33966 3.39880 3.43324 3.75679 4.31738 4.43942 4.49169 4.52719 4.86887 5.07680 5.21012 5.27114 5.37908 5.39250 5.40861 5.47027 5.58664 5.64280 5.73507 5.82171 5.84992 5.95761 6.06811 6.14852 6.17157 6.25890 6.52871 6.83057 6.96802 7.14751 7.46785 7.72574 7.83187 7.87997 8.04732 8.46961 9.08782 9.65115 11.15199 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.047282 B = 0.003701 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.050354 B = 7563.333558 C = 7948.482517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.017 3.983 4 H 0.096 0.904 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.148 4.148 8 C 0.090 3.910 9 H 0.067 0.933 10 O -0.370 6.370 11 C 0.061 3.939 12 C -0.115 4.115 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.213 0.787 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.025 15.077 12.336 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.165 4.165 3 C -0.001 4.001 4 H 0.114 0.886 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.186 4.186 8 C 0.032 3.968 9 H 0.085 0.915 10 O -0.289 6.289 11 C -0.015 4.015 12 C -0.152 4.152 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.230 0.770 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.683 15.132 12.226 22.194 hybrid contribution 0.124 -1.158 -0.478 1.259 sum 10.807 13.974 11.747 21.215 Atomic orbital electron populations 1.24761 0.95802 1.00560 1.00971 1.22312 0.93563 1.00442 1.00136 1.19079 0.86028 0.96474 0.98543 0.88596 1.22404 0.97476 0.94983 1.00266 1.22435 0.97312 0.98586 0.97692 1.22927 0.99833 0.96806 0.98987 1.22700 0.88206 0.94867 0.91065 0.91475 1.88059 1.36351 1.35722 1.68788 1.22726 0.99013 0.83957 0.95787 1.21612 0.96163 0.98322 0.99140 1.21574 1.01011 0.93202 0.98703 1.19090 0.91940 0.95695 0.94876 1.21278 0.98613 1.04407 1.31577 0.92737 1.25040 0.95140 0.97855 0.96527 1.69977 1.03998 1.38627 1.40909 0.86598 0.78272 0.84323 0.78818 1.20688 1.21231 1.19900 0.76962 0.90831 0.90993 0.91160 0.91013 0.91202 0.90174 0.93754 0.93808 0.91807 0.91815 0.93390 0.93412 0.96564 0.96544 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 19.25 29.55 0.57 -2.09 16 2 C -0.16 -2.20 11.10 -37.12 -0.41 -2.61 16 3 C 0.02 0.18 3.34 -92.29 -0.31 -0.13 16 4 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.11 -0.98 6.34 -25.07 -0.16 -1.14 16 6 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 7 C -0.15 -1.47 6.56 -25.08 -0.16 -1.64 16 8 C 0.09 1.06 3.35 -25.61 -0.09 0.97 16 9 H 0.07 0.70 7.80 -51.93 -0.41 0.30 16 10 O -0.37 -5.70 8.46 -35.23 -0.30 -6.00 16 11 C 0.06 0.95 5.78 37.16 0.21 1.17 16 12 C -0.11 -2.13 5.58 -26.73 -0.15 -2.28 16 13 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.21 2.15 7.80 -54.09 -0.42 1.72 16 24 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 318.88 15.07 4.81 4.81 Total: -1.00 -32.02 318.88 -7.82 -39.84 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.69 Total: -4.03 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -1.35 Total: -24.80 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.30 Total: -6.00 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.02 -7.82 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.231 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds