Wall clock time and date at job start Sun Mar 29 2020 21:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08998 * 110.05599 * 291.67341 * 3 2 1 5 5 C 1.54267 * 110.02878 * 170.25689 * 3 2 1 6 6 C 1.54891 * 104.19324 * 217.10662 * 5 3 2 7 7 C 1.54888 * 102.75120 * 37.94011 * 6 5 3 8 8 C 1.53876 * 110.03315 * 53.09169 * 3 2 1 9 9 H 1.08997 * 110.02757 * 238.61459 * 8 3 2 10 10 O 1.42904 * 110.03212 * 359.97438 * 8 3 2 11 11 C 1.42898 * 113.99774 * 209.99980 * 10 8 3 12 12 C 1.52995 * 109.46941 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47386 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47386 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47055 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00068 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99844 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99964 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00086 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47193 * 90.00109 * 19 17 15 21 21 H 1.48500 * 109.47407 * 210.00250 * 19 17 15 22 22 H 1.48505 * 109.47114 * 330.00338 * 19 17 15 23 23 H 4.19663 * 14.89672 * 359.97438 * 4 2 1 24 24 H 1.09004 * 110.48597 * 335.78301 * 5 3 2 25 25 H 1.08994 * 110.48679 * 98.42827 * 5 3 2 26 26 H 1.09005 * 110.75269 * 279.62515 * 6 5 3 27 27 H 1.08999 * 110.75712 * 156.25949 * 6 5 3 28 28 H 1.09000 * 110.48622 * 203.37816 * 7 6 5 29 29 H 1.08999 * 110.48451 * 80.73628 * 7 6 5 30 30 H 1.08993 * 109.47318 * 300.00106 * 11 10 8 31 31 H 1.09006 * 109.46821 * 60.00450 * 11 10 8 32 32 H 1.08996 * 109.47815 * 300.00580 * 12 11 10 33 33 H 1.09006 * 109.46810 * 60.00670 * 12 11 10 34 34 H 1.08996 * 109.47303 * 300.01121 * 13 12 11 35 35 H 1.09006 * 109.46413 * 60.00654 * 13 12 11 36 36 H 1.08996 * 109.47815 * 300.00807 * 14 13 12 37 37 H 1.09006 * 109.46668 * 60.00362 * 14 13 12 38 38 H 0.97004 * 119.99631 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0200 -0.3773 0.9515 5 6 3.1737 1.4294 -0.2453 6 6 4.4290 1.2240 -1.1291 7 6 4.0034 0.0642 -2.0633 8 6 3.1735 -0.8673 -1.1559 9 1 3.8028 -1.6669 -0.7653 10 8 2.0801 -1.4206 -1.8911 11 6 2.3639 -2.6867 -2.4899 12 6 1.1293 -3.1812 -3.2462 13 6 1.4332 -4.5365 -3.8880 14 6 0.1989 -5.0307 -4.6448 15 6 0.4981 -6.3659 -5.2763 16 1 1.4712 -6.8170 -5.1502 17 6 -0.4705 -7.0116 -6.0153 18 7 -1.6554 -6.4619 -6.1694 19 14 -0.0999 -8.6669 -6.7975 20 1 -0.4525 -9.7530 -5.8482 21 1 -0.8987 -8.8170 -8.0404 22 1 1.3462 -8.7465 -7.1259 23 1 -1.0500 0.0003 0.0006 24 1 2.4292 2.0257 -0.7727 25 1 3.4448 1.9031 0.6982 26 1 5.2865 0.9355 -0.5211 27 1 4.6475 2.1235 -1.7048 28 1 4.8800 -0.4582 -2.4465 29 1 3.3929 0.4401 -2.8843 30 1 3.1977 -2.5816 -3.1840 31 1 2.6258 -3.4053 -1.7133 32 1 0.2957 -3.2863 -2.5519 33 1 0.8669 -2.4626 -4.0228 34 1 2.2667 -4.4310 -4.5823 35 1 1.6958 -5.2553 -3.1117 36 1 -0.6349 -5.1362 -3.9508 37 1 -0.0633 -4.3118 -5.4211 38 1 -2.3369 -6.9164 -6.6889 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:21 Heat of formation + Delta-G solvation = -44.828762 kcal Electronic energy + Delta-G solvation = -16046.019640 eV Core-core repulsion = 13467.017761 eV Total energy + Delta-G solvation = -2579.001879 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25591 -37.63881 -36.14208 -34.24140 -33.75604 -30.66775 -29.44048 -28.51081 -26.47144 -23.42607 -22.28016 -21.77702 -21.61489 -19.07338 -18.45386 -17.49445 -16.87301 -16.69886 -16.51605 -15.67351 -15.24281 -14.75956 -14.70091 -14.28214 -13.81557 -13.60796 -13.15466 -12.96315 -12.84443 -12.72244 -12.40077 -12.32629 -12.09176 -11.94916 -11.80225 -11.56066 -11.45637 -11.34276 -11.11571 -10.96729 -10.89114 -10.56628 -10.37545 -8.20600 -6.32632 1.39674 1.41782 1.52960 1.98505 2.01726 2.40342 2.71203 3.12190 3.48931 3.68662 3.76031 4.05337 4.09930 4.22867 4.28958 4.44596 4.50536 4.51741 4.57389 4.61613 4.71745 4.77326 4.87692 5.00768 5.07638 5.13366 5.14790 5.21570 5.24719 5.26174 5.30454 5.45003 5.51808 5.73420 5.84323 6.23188 6.38907 6.84709 6.84873 7.36864 8.91592 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.047282 B = 0.003701 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.050354 B = 7563.333558 C = 7948.482517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.183 4.183 3 C 0.010 3.990 4 H 0.117 0.883 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.148 4.148 8 C 0.080 3.920 9 H 0.083 0.917 10 O -0.394 6.394 11 C 0.071 3.929 12 C -0.108 4.108 13 C -0.093 4.093 14 C 0.022 3.978 15 C -0.545 4.545 16 H 0.063 0.937 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.261 1.261 23 H 0.230 0.770 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.056 0.944 36 H -0.012 1.012 37 H -0.011 1.011 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.309 14.762 12.961 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.183 4.183 3 C -0.008 4.008 4 H 0.135 0.865 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.186 4.186 8 C 0.022 3.978 9 H 0.101 0.899 10 O -0.314 6.314 11 C -0.005 4.005 12 C -0.145 4.145 13 C -0.131 4.131 14 C -0.015 4.015 15 C -0.583 4.583 16 H 0.081 0.919 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.185 1.185 23 H 0.246 0.754 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.983 14.831 12.864 23.537 hybrid contribution -0.636 -1.008 -0.651 1.358 sum 12.347 13.823 12.213 22.196 Atomic orbital electron populations 1.25456 0.96903 1.00903 1.01244 1.23127 0.94875 1.00280 1.00005 1.19359 0.84557 0.97738 0.99148 0.86536 1.22402 0.97409 0.93556 1.01393 1.22438 0.97397 0.98017 0.97239 1.22916 0.99608 0.97460 0.98583 1.23036 0.87684 0.95669 0.91412 0.89876 1.88021 1.38460 1.35469 1.69415 1.22500 0.97239 0.84620 0.96142 1.21430 0.97582 0.96708 0.98806 1.21350 0.98455 0.94695 0.98585 1.19024 0.93572 0.94905 0.94037 1.21729 0.99158 1.05372 1.31998 0.91868 1.26064 0.94793 1.02312 0.97017 1.70121 1.05161 1.40629 1.41685 0.85386 0.78702 0.78801 0.77785 1.19682 1.20739 1.18491 0.75351 0.92449 0.88815 0.89014 0.90067 0.90018 0.92253 0.92380 0.92612 0.93075 0.92930 0.92427 0.92523 0.99329 0.99262 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -6.02 19.25 74.32 1.43 -4.59 16 2 C -0.18 -4.83 11.10 31.13 0.35 -4.48 16 3 C 0.01 0.20 3.34 -11.87 -0.04 0.16 16 4 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 5 C -0.11 -1.68 6.34 31.67 0.20 -1.47 16 6 C -0.11 -1.43 6.91 31.89 0.22 -1.21 16 7 C -0.15 -2.67 6.56 31.67 0.21 -2.46 16 8 C 0.08 1.72 3.35 31.32 0.10 1.83 16 9 H 0.08 1.52 7.80 -2.39 -0.02 1.50 16 10 O -0.39 -11.86 8.46 -148.98 -1.26 -13.12 16 11 C 0.07 2.12 5.78 71.98 0.42 2.54 16 12 C -0.11 -4.02 5.58 30.59 0.17 -3.85 16 13 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 16 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 18 N -0.94 -58.63 13.29 21.45 0.28 -58.34 16 19 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H 0.23 4.71 7.80 -4.42 -0.03 4.68 16 24 H 0.06 1.05 7.84 -2.38 -0.02 1.04 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.53 8.10 -2.38 -0.02 1.51 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -69.67 318.88 6.09 -63.58 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.98 Total: 8.38 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 4.06 Total: -47.49 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.28 Total: -58.34 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.26 Total: -13.12 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.67 6.09 -63.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.751 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds