Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09002 * 110.81490 * 258.42393 * 3 2 1 5 5 C 1.54890 * 110.75559 * 21.76037 * 3 2 1 6 6 C 1.54267 * 104.19583 * 80.37398 * 5 3 2 7 7 C 1.53871 * 106.59989 * 23.60624 * 6 5 3 8 8 C 1.54269 * 106.59758 * 0.02562 * 7 6 5 9 9 H 1.09001 * 110.48976 * 95.20046 * 8 7 6 10 10 O 1.42904 * 110.48769 * 217.71055 * 8 7 6 11 11 C 1.42905 * 114.00039 * 268.54934 * 10 8 7 12 12 C 1.52998 * 109.47189 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 4.20852 * 14.71115 * 359.97438 * 4 2 1 24 24 H 1.08996 * 110.48492 * 321.69197 * 5 3 2 25 25 H 1.08998 * 110.59312 * 199.10494 * 5 3 2 26 26 H 1.09001 * 110.02858 * 264.32334 * 6 5 3 27 27 H 1.09001 * 110.03286 * 142.89409 * 6 5 3 28 28 H 1.08998 * 110.03961 * 240.71814 * 7 6 5 29 29 H 1.09006 * 110.07525 * 119.30702 * 7 6 5 30 30 H 1.09004 * 109.47380 * 59.99365 * 11 10 8 31 31 H 1.09006 * 109.46700 * 299.99936 * 11 10 8 32 32 H 1.09000 * 109.46986 * 59.99613 * 12 11 10 33 33 H 1.09002 * 109.46857 * 299.99479 * 12 11 10 34 34 H 1.09000 * 109.47441 * 60.00090 * 13 12 11 35 35 H 1.09002 * 109.47087 * 299.99536 * 13 12 11 36 36 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 37 37 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0333 0.2053 0.9982 5 6 3.1956 -1.3443 -0.5370 6 6 3.0957 -1.2085 -2.0704 7 6 3.0950 0.2989 -2.3792 8 6 3.1951 1.0266 -1.0226 9 1 4.2325 1.2748 -0.7984 10 8 2.3896 2.2070 -1.0276 11 6 3.0855 3.3838 -1.4437 12 6 2.1309 4.5790 -1.4113 13 6 2.8761 5.8390 -1.8561 14 6 1.9214 7.0341 -1.8244 15 6 2.6556 8.2754 -2.2620 16 1 3.6989 8.2177 -2.5350 17 6 1.9953 9.4846 -2.3138 18 7 0.7249 9.5551 -1.9808 19 14 2.9056 11.0233 -2.8554 20 1 1.9785 12.1830 -2.8259 21 1 4.0436 11.2750 -1.9352 22 1 3.4180 10.8349 -4.2365 23 1 -1.0499 0.0004 -0.0003 24 1 2.5819 -2.1742 -0.1866 25 1 4.2331 -1.4832 -0.2330 26 1 2.1710 -1.6630 -2.4260 27 1 3.9533 -1.6863 -2.5442 28 1 2.1700 0.5761 -2.8846 29 1 3.9518 0.5534 -3.0031 30 1 3.4595 3.2452 -2.4581 31 1 3.9223 3.5683 -0.7700 32 1 1.7566 4.7177 -0.3970 33 1 1.2944 4.3942 -2.0853 34 1 3.2508 5.7006 -2.8703 35 1 3.7124 6.0236 -1.1818 36 1 1.5463 7.1728 -0.8104 37 1 1.0853 6.8493 -2.4989 38 1 0.2524 8.7561 -1.6992 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = -32.243928 kcal Electronic energy + Delta-G solvation = -16027.510067 eV Core-core repulsion = 13449.053907 eV Total energy + Delta-G solvation = -2578.456159 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39760 -36.69062 -34.63743 -32.65783 -32.39208 -28.93016 -28.79380 -27.36854 -24.28823 -22.06610 -21.77983 -20.57592 -20.23195 -18.04595 -16.74729 -16.49080 -16.20932 -15.44941 -15.06947 -14.08222 -13.70307 -13.65853 -13.42267 -13.09488 -12.74111 -12.21052 -11.95298 -11.87466 -11.56240 -11.28943 -11.08553 -10.90645 -10.74068 -10.67893 -10.61327 -10.12869 -10.09707 -10.08715 -9.78069 -9.64341 -9.36775 -8.48669 -8.28402 -6.32004 -4.00656 2.85288 2.88851 3.45777 3.48250 3.66706 3.67749 4.23752 4.36422 4.52563 4.58439 4.75605 5.01547 5.17150 5.22426 5.31670 5.37050 5.44115 5.45686 5.48735 5.61140 5.65038 5.74258 5.78260 5.94775 5.98182 6.05583 6.09483 6.14876 6.40074 6.68904 6.81334 6.98324 7.37428 7.46697 7.59887 7.71111 8.26859 8.50887 8.93162 9.71983 11.08804 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.051244 B = 0.003583 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.273442 B = 7812.371995 C = 8138.497625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.017 3.983 4 H 0.099 0.901 5 C -0.114 4.114 6 C -0.120 4.120 7 C -0.149 4.149 8 C 0.091 3.909 9 H 0.074 0.926 10 O -0.372 6.372 11 C 0.062 3.938 12 C -0.117 4.117 13 C -0.100 4.100 14 C 0.008 3.992 15 C -0.603 4.603 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 1.069 2.931 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.288 1.288 23 H 0.214 0.786 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -22.305 2.276 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.159 4.159 3 C -0.001 4.001 4 H 0.117 0.883 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.187 4.187 8 C 0.033 3.967 9 H 0.092 0.908 10 O -0.291 6.291 11 C -0.014 4.014 12 C -0.154 4.154 13 C -0.138 4.138 14 C -0.029 4.029 15 C -0.641 4.641 16 H 0.066 0.934 17 C -0.191 4.191 18 N -0.551 5.551 19 Si 0.898 3.102 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.215 1.215 23 H 0.231 0.769 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.093 -20.670 2.054 21.388 hybrid contribution 0.266 -1.626 0.148 1.654 sum 5.359 -22.296 2.202 23.037 Atomic orbital electron populations 1.24760 0.95791 1.00974 1.01076 1.22298 0.93524 0.99960 1.00135 1.19235 0.86037 0.95293 0.99570 0.88329 1.22371 1.01179 0.95891 0.95744 1.22045 1.02040 0.96044 0.95656 1.22678 1.02967 0.95170 0.97879 1.22953 0.94286 0.85572 0.93910 0.90839 1.88018 1.37468 1.15594 1.88056 1.22709 0.95486 0.85108 0.98114 1.21635 0.98478 0.92984 1.02324 1.21438 0.98956 0.93641 0.99760 1.19221 0.94778 0.92739 0.96186 1.22082 0.98335 0.94380 1.49282 0.93389 1.25871 0.96473 1.01736 0.95005 1.70775 1.09402 1.32851 1.42035 0.83544 0.74974 0.75502 0.76226 1.20766 1.21465 1.21475 0.76907 0.90806 0.90416 0.91622 0.91510 0.90555 0.91473 0.93642 0.93599 0.91814 0.91827 0.93193 0.93180 0.97452 0.97456 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.54 19.25 29.55 0.57 -1.97 16 2 C -0.16 -2.03 11.50 -37.12 -0.43 -2.46 16 3 C 0.02 0.18 3.43 -91.40 -0.31 -0.14 16 4 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.11 -0.91 6.30 -25.07 -0.16 -1.07 16 6 C -0.12 -1.01 6.61 -25.61 -0.17 -1.18 16 7 C -0.15 -1.56 6.37 -25.61 -0.16 -1.72 16 8 C 0.09 1.06 3.08 -25.06 -0.08 0.98 16 9 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 10 O -0.37 -5.70 9.20 -35.23 -0.32 -6.02 16 11 C 0.06 0.95 5.80 37.16 0.22 1.17 16 12 C -0.12 -2.14 5.58 -26.73 -0.15 -2.29 16 13 C -0.10 -2.15 5.15 -26.73 -0.14 -2.28 16 14 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 15 C -0.60 -17.78 9.11 -34.44 -0.31 -18.09 16 16 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 17 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 18 N -0.91 -28.88 13.65 55.43 0.76 -28.12 16 19 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.21 1.91 7.80 -54.10 -0.42 1.49 16 24 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16 37 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 38 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -32.86 318.27 -7.84 -40.70 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.64 Total: -3.42 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -1.34 Total: -28.69 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 0.76 Total: -28.12 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.32 Total: -6.02 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.86 -7.84 -40.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.453 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds