Wall clock time and date at job start Sun Mar 29 2020 21:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09002 * 110.81490 * 258.42393 * 3 2 1 5 5 C 1.54890 * 110.75559 * 21.76037 * 3 2 1 6 6 C 1.54267 * 104.19583 * 80.37398 * 5 3 2 7 7 C 1.53871 * 106.59989 * 23.60624 * 6 5 3 8 8 C 1.54269 * 106.59758 * 0.02562 * 7 6 5 9 9 H 1.09001 * 110.48976 * 95.20046 * 8 7 6 10 10 O 1.42904 * 110.48769 * 217.71055 * 8 7 6 11 11 C 1.42905 * 114.00039 * 268.54934 * 10 8 7 12 12 C 1.52998 * 109.47189 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 H 4.20852 * 14.71115 * 359.97438 * 4 2 1 24 24 H 1.08996 * 110.48492 * 321.69197 * 5 3 2 25 25 H 1.08998 * 110.59312 * 199.10494 * 5 3 2 26 26 H 1.09001 * 110.02858 * 264.32334 * 6 5 3 27 27 H 1.09001 * 110.03286 * 142.89409 * 6 5 3 28 28 H 1.08998 * 110.03961 * 240.71814 * 7 6 5 29 29 H 1.09006 * 110.07525 * 119.30702 * 7 6 5 30 30 H 1.09004 * 109.47380 * 59.99365 * 11 10 8 31 31 H 1.09006 * 109.46700 * 299.99936 * 11 10 8 32 32 H 1.09000 * 109.46986 * 59.99613 * 12 11 10 33 33 H 1.09002 * 109.46857 * 299.99479 * 12 11 10 34 34 H 1.09000 * 109.47441 * 60.00090 * 13 12 11 35 35 H 1.09002 * 109.47087 * 299.99536 * 13 12 11 36 36 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 37 37 H 1.09006 * 109.47297 * 299.99829 * 14 13 12 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0333 0.2053 0.9982 5 6 3.1956 -1.3443 -0.5370 6 6 3.0957 -1.2085 -2.0704 7 6 3.0950 0.2989 -2.3792 8 6 3.1951 1.0266 -1.0226 9 1 4.2325 1.2748 -0.7984 10 8 2.3896 2.2070 -1.0276 11 6 3.0855 3.3838 -1.4437 12 6 2.1309 4.5790 -1.4113 13 6 2.8761 5.8390 -1.8561 14 6 1.9214 7.0341 -1.8244 15 6 2.6556 8.2754 -2.2620 16 1 3.6989 8.2177 -2.5350 17 6 1.9953 9.4846 -2.3138 18 7 0.7249 9.5551 -1.9808 19 14 2.9056 11.0233 -2.8554 20 1 1.9785 12.1830 -2.8259 21 1 4.0436 11.2750 -1.9352 22 1 3.4180 10.8349 -4.2365 23 1 -1.0499 0.0004 -0.0003 24 1 2.5819 -2.1742 -0.1866 25 1 4.2331 -1.4832 -0.2330 26 1 2.1710 -1.6630 -2.4260 27 1 3.9533 -1.6863 -2.5442 28 1 2.1700 0.5761 -2.8846 29 1 3.9518 0.5534 -3.0031 30 1 3.4595 3.2452 -2.4581 31 1 3.9223 3.5683 -0.7700 32 1 1.7566 4.7177 -0.3970 33 1 1.2944 4.3942 -2.0853 34 1 3.2508 5.7006 -2.8703 35 1 3.7124 6.0236 -1.1818 36 1 1.5463 7.1728 -0.8104 37 1 1.0853 6.8493 -2.4989 38 1 0.2524 8.7561 -1.6992 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:23 Heat of formation + Delta-G solvation = -50.283460 kcal Electronic energy + Delta-G solvation = -16028.292319 eV Core-core repulsion = 13449.053907 eV Total energy + Delta-G solvation = -2579.238412 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.29435 -37.82840 -36.46135 -34.35182 -33.52560 -30.49067 -29.61436 -28.45027 -26.20315 -23.67956 -22.82050 -21.95391 -21.28609 -18.94103 -18.90353 -17.53607 -17.09883 -16.74495 -15.99710 -15.63405 -15.27114 -15.20338 -14.79201 -14.45243 -13.82118 -13.65781 -13.49042 -12.81767 -12.65142 -12.56111 -12.49812 -12.24126 -12.22033 -11.97333 -11.90631 -11.64933 -11.57202 -11.47357 -11.03760 -10.94411 -10.66948 -10.56087 -10.40293 -8.71339 -6.41997 1.52029 1.61373 1.80691 1.92611 1.95865 2.55372 2.64549 3.14134 3.45349 3.59783 3.75793 3.95906 3.99555 4.12976 4.22200 4.35233 4.45065 4.47182 4.49130 4.55258 4.62934 4.74313 4.78784 4.90629 4.98141 5.00159 5.02496 5.10260 5.16529 5.18828 5.23867 5.39952 5.41610 5.51009 5.97933 6.16355 6.31708 6.54732 6.79097 7.41527 8.69427 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.051244 B = 0.003583 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.273442 B = 7812.371995 C = 8138.497625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.183 4.183 3 C 0.009 3.991 4 H 0.109 0.891 5 C -0.106 4.106 6 C -0.118 4.118 7 C -0.149 4.149 8 C 0.082 3.918 9 H 0.095 0.905 10 O -0.396 6.396 11 C 0.072 3.928 12 C -0.109 4.109 13 C -0.087 4.087 14 C 0.005 3.995 15 C -0.621 4.621 16 H 0.055 0.945 17 C -0.044 4.044 18 N -0.939 5.939 19 Si 1.121 2.879 20 H -0.284 1.284 21 H -0.266 1.266 22 H -0.267 1.267 23 H 0.234 0.766 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.058 0.942 36 H -0.014 1.014 37 H -0.015 1.015 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -23.192 2.048 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.183 4.183 3 C -0.009 4.009 4 H 0.127 0.873 5 C -0.143 4.143 6 C -0.155 4.155 7 C -0.187 4.187 8 C 0.024 3.976 9 H 0.113 0.887 10 O -0.316 6.316 11 C -0.005 4.005 12 C -0.147 4.147 13 C -0.125 4.125 14 C -0.032 4.032 15 C -0.659 4.659 16 H 0.073 0.927 17 C -0.240 4.240 18 N -0.577 5.577 19 Si 0.941 3.059 20 H -0.209 1.209 21 H -0.191 1.191 22 H -0.192 1.192 23 H 0.250 0.750 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.005 0.995 37 H 0.004 0.996 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.370 -21.600 1.831 22.896 hybrid contribution -0.498 -1.401 0.239 1.506 sum 6.872 -23.002 2.070 24.095 Atomic orbital electron populations 1.25507 0.96892 1.00968 1.00979 1.23066 0.94785 1.00117 1.00332 1.19476 0.84903 0.96503 1.00057 0.87302 1.22384 1.02554 0.94353 0.94997 1.22049 1.02619 0.94544 0.96306 1.22666 1.02149 0.96544 0.97295 1.23274 0.94954 0.84413 0.94922 0.88737 1.87978 1.38865 1.16522 1.88245 1.22495 0.94547 0.84150 0.99279 1.21450 0.98596 0.93429 1.01216 1.21236 0.97992 0.92729 1.00535 1.19208 0.95152 0.94668 0.94170 1.22545 0.98895 0.95524 1.48948 0.92696 1.27589 0.96434 1.05788 0.94217 1.70919 1.10649 1.32165 1.43939 0.82903 0.74334 0.71319 0.77315 1.20911 1.19133 1.19187 0.74961 0.90462 0.87869 0.92446 0.89375 0.93091 0.90274 0.92529 0.91999 0.92776 0.92990 0.92508 0.92344 0.99541 0.99619 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.49 19.25 74.32 1.43 -4.06 16 2 C -0.18 -4.59 11.50 31.12 0.36 -4.23 16 3 C 0.01 0.17 3.43 -11.30 -0.04 0.13 16 4 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 5 C -0.11 -1.40 6.30 31.67 0.20 -1.20 16 6 C -0.12 -1.72 6.61 31.32 0.21 -1.51 16 7 C -0.15 -2.88 6.37 31.32 0.20 -2.68 16 8 C 0.08 1.75 3.08 31.68 0.10 1.85 16 9 H 0.09 1.62 7.86 -2.39 -0.02 1.60 16 10 O -0.40 -11.77 9.20 -148.98 -1.37 -13.14 16 11 C 0.07 2.08 5.80 71.98 0.42 2.50 16 12 C -0.11 -4.01 5.58 30.59 0.17 -3.84 16 13 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 14 C 0.01 0.28 4.28 29.85 0.13 0.40 16 15 C -0.62 -36.77 9.11 25.60 0.23 -36.53 16 16 H 0.05 3.11 7.74 -2.91 -0.02 3.08 16 17 C -0.04 -2.61 5.46 84.65 0.46 -2.15 16 18 N -0.94 -60.46 13.65 21.45 0.29 -60.16 16 19 Si 1.12 51.10 29.90 68.60 2.05 53.16 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 23 H 0.23 4.13 7.80 -4.42 -0.03 4.10 16 24 H 0.08 0.99 8.04 -2.39 -0.02 0.97 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 1.23 8.07 -2.39 -0.02 1.21 16 29 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.06 1.61 8.10 -2.38 -0.02 1.59 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 37 H -0.01 -0.85 8.01 -2.38 -0.02 -0.87 16 38 H 0.25 16.62 7.22 -92.71 -0.67 15.95 16 Total: -1.00 -71.44 318.27 6.08 -65.36 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.09 Total: 9.65 kcal Atomic # 6 Polarization: -58.89 SS G_CDS: 4.02 Total: -54.86 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.29 Total: -60.16 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.37 Total: -13.14 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.16 kcal Total: -71.44 6.08 -65.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.078 kcal (2) G-P(sol) polarization free energy of solvation -71.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds