Wall clock time and date at job start Sun Mar 29 2020 21:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 110.01748 * 251.65116 * 3 2 1 5 5 C 1.54269 * 110.03072 * 13.09517 * 3 2 1 6 6 C 1.54890 * 104.19540 * 95.67598 * 5 3 2 7 7 C 1.54889 * 102.75216 * 37.93785 * 6 5 3 8 8 C 1.53873 * 110.03021 * 130.26055 * 3 2 1 9 9 H 1.09004 * 110.03184 * 0.04817 * 8 3 2 10 10 O 1.42899 * 110.03218 * 121.43240 * 8 3 2 11 11 C 1.42908 * 113.99720 * 210.00196 * 10 8 3 12 12 C 1.53001 * 109.46826 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47013 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47013 * 180.02562 * 13 12 11 15 15 C 1.50709 * 109.47127 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99536 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99819 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00510 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99733 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46921 * 89.99772 * 19 17 15 21 21 H 1.48501 * 109.47201 * 209.99827 * 19 17 15 22 22 H 1.48499 * 109.47037 * 330.00181 * 19 17 15 23 23 H 4.19601 * 14.90534 * 359.97438 * 4 2 1 24 24 H 1.09001 * 110.48246 * 214.35336 * 5 3 2 25 25 H 1.08999 * 110.48526 * 336.99289 * 5 3 2 26 26 H 1.08998 * 110.75172 * 279.62593 * 6 5 3 27 27 H 1.09000 * 110.75667 * 156.25404 * 6 5 3 28 28 H 1.08992 * 110.48840 * 203.38386 * 7 6 5 29 29 H 1.09000 * 110.59544 * 80.79140 * 7 6 5 30 30 H 1.08997 * 109.46722 * 299.99404 * 11 10 8 31 31 H 1.08993 * 109.47447 * 60.00072 * 11 10 8 32 32 H 1.09000 * 109.47350 * 300.00042 * 12 11 10 33 33 H 1.09005 * 109.47011 * 59.99485 * 12 11 10 34 34 H 1.09003 * 109.47230 * 299.99792 * 13 12 11 35 35 H 1.08993 * 109.47161 * 60.00277 * 13 12 11 36 36 H 1.08994 * 109.47499 * 299.99866 * 14 13 12 37 37 H 1.09003 * 109.47094 * 60.00251 * 14 13 12 38 38 H 0.96995 * 120.00559 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0190 0.3232 0.9721 5 6 3.1750 -1.4108 -0.3284 6 6 3.4446 -1.3702 -1.8531 7 6 4.0033 0.0591 -2.0635 8 6 3.1726 0.9352 -1.1032 9 1 2.3381 1.3889 -1.6380 10 8 3.9976 1.9519 -0.5308 11 6 3.9835 3.1859 -1.2515 12 6 4.8959 4.1954 -0.5520 13 6 4.8813 5.5163 -1.3240 14 6 5.7942 6.5256 -0.6248 15 6 5.7804 7.8266 -1.3855 16 1 5.1802 7.9238 -2.2781 17 6 6.5340 8.8925 -0.9419 18 7 7.2645 8.7743 0.1452 19 14 6.5174 10.5048 -1.8852 20 1 5.4330 11.3736 -1.3615 21 1 7.8245 11.1896 -1.7182 22 1 6.2815 10.2330 -3.3260 23 1 -1.0500 0.0004 -0.0004 24 1 4.0978 -1.6087 0.2171 25 1 2.4230 -2.1642 -0.0938 26 1 2.5197 -1.5096 -2.4127 27 1 4.1845 -2.1195 -2.1347 28 1 3.8558 0.3783 -3.0952 29 1 5.0601 0.1003 -1.7997 30 1 4.3395 3.0171 -2.2678 31 1 2.9665 3.5768 -1.2830 32 1 4.5395 4.3641 0.4642 33 1 5.9130 3.8047 -0.5202 34 1 5.2380 5.3473 -2.3400 35 1 3.8644 5.9071 -1.3561 36 1 5.4381 6.6948 0.3913 37 1 6.8112 6.1346 -0.5930 38 1 7.7950 9.5241 0.4570 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:25 Heat of formation + Delta-G solvation = -30.837683 kcal Electronic energy + Delta-G solvation = -15883.520378 eV Core-core repulsion = 13305.125198 eV Total energy + Delta-G solvation = -2578.395180 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38416 -36.63786 -34.42187 -32.99203 -32.26047 -29.04321 -28.76391 -27.47881 -24.66083 -21.74385 -21.54745 -20.91561 -19.97776 -18.14584 -16.86294 -16.22236 -15.80756 -15.55519 -14.87124 -14.43364 -14.01851 -13.84530 -13.43438 -12.61375 -12.36088 -12.23864 -12.03121 -11.68952 -11.51994 -11.30707 -11.16073 -11.02761 -10.79094 -10.65588 -10.53249 -10.37661 -10.34261 -10.22270 -9.64870 -9.35715 -9.28734 -9.02056 -8.31736 -5.96671 -3.99114 2.60274 2.67173 3.33772 3.39727 3.43158 3.68547 4.18585 4.38952 4.47687 4.50287 4.78308 5.07693 5.24869 5.27586 5.37504 5.39108 5.44006 5.47606 5.58615 5.65245 5.66231 5.80354 5.82829 5.88734 5.96202 6.08821 6.14488 6.22466 6.50678 6.81059 6.94720 7.13085 7.40529 7.44696 7.71866 7.87087 8.04078 8.46323 9.08223 9.64691 11.14724 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.048587 B = 0.003413 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.142188 B = 8200.758173 C = 8364.963086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.011 3.989 4 H 0.108 0.892 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.147 4.147 8 C 0.093 3.907 9 H 0.065 0.935 10 O -0.380 6.380 11 C 0.063 3.937 12 C -0.116 4.116 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.217 0.783 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.906 -20.401 -2.562 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.173 4.173 3 C -0.007 4.007 4 H 0.126 0.874 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.184 4.184 8 C 0.035 3.965 9 H 0.083 0.917 10 O -0.300 6.300 11 C -0.013 4.013 12 C -0.154 4.154 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.234 0.766 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.663 -20.320 -2.286 22.616 hybrid contribution -0.368 1.077 -0.676 1.324 sum -10.030 -19.243 -2.962 21.901 Atomic orbital electron populations 1.24860 0.95831 1.00934 1.01221 1.22887 0.93986 1.00225 1.00182 1.18930 0.84498 0.96123 1.01120 0.87379 1.22376 1.01226 0.94668 0.96662 1.22447 1.00952 0.96767 0.95870 1.22907 1.01156 0.94974 0.99394 1.22692 0.92617 0.88666 0.92530 0.91667 1.87940 1.67242 1.22069 1.52699 1.22743 0.99572 0.83726 0.95259 1.21642 0.99046 0.94577 1.00115 1.21578 1.00752 0.93496 0.98723 1.19094 0.94280 0.92526 0.95709 1.21278 1.26869 0.97124 1.10639 0.92732 1.25033 0.95490 0.98878 0.95134 1.69965 1.29188 1.31516 1.22843 0.86600 0.77310 0.83810 0.80313 1.20685 1.21228 1.19898 0.76596 0.90257 0.91100 0.91455 0.90965 0.91246 0.89904 0.93575 0.93688 0.91711 0.91655 0.93340 0.93375 0.96535 0.96509 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.10 19.25 29.55 0.57 -1.53 16 2 C -0.17 -1.96 12.18 -37.12 -0.45 -2.41 16 3 C 0.01 0.12 3.16 -92.29 -0.29 -0.17 16 4 H 0.11 1.24 7.95 -51.93 -0.41 0.83 16 5 C -0.11 -0.97 6.34 -25.07 -0.16 -1.13 16 6 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 7 C -0.15 -1.48 6.56 -25.07 -0.16 -1.65 16 8 C 0.09 1.12 3.02 -25.61 -0.08 1.05 16 9 H 0.07 0.80 7.32 -51.93 -0.38 0.42 16 10 O -0.38 -5.68 9.90 -35.23 -0.35 -6.03 16 11 C 0.06 0.97 5.78 37.16 0.21 1.18 16 12 C -0.12 -2.10 5.58 -26.73 -0.15 -2.25 16 13 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 19 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.22 1.37 7.80 -54.09 -0.42 0.95 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -31.26 320.19 -7.83 -39.09 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.65 Total: -4.17 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -1.37 Total: -23.95 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.35 Total: -6.03 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.26 -7.83 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.255 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds