Wall clock time and date at job start Sun Mar 29 2020 21:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99889 * 2 1 4 4 H 1.07998 * 120.00058 * 202.35235 * 3 2 1 5 5 C 1.38817 * 120.00368 * 22.34840 * 3 2 1 6 6 N 1.31624 * 119.99645 * 11.35294 * 5 3 2 7 7 Si 1.86795 * 120.00275 * 191.34635 * 5 3 2 8 8 H 1.48493 * 109.47170 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46946 * 120.00481 * 7 5 3 10 10 H 1.48496 * 109.47194 * 240.00052 * 7 5 3 11 11 C 1.46492 * 119.99756 * 179.97438 * 2 1 3 12 12 C 1.50698 * 109.47581 * 269.99704 * 11 2 1 13 13 C 1.34847 * 125.88687 * 95.00013 * 12 11 2 14 14 C 1.40893 * 107.41745 * 180.24696 * 13 12 11 15 15 C 1.50699 * 126.29307 * 179.70260 * 14 13 12 16 16 C 1.52998 * 109.47065 * 60.00010 * 15 14 13 17 17 C 1.52999 * 109.47209 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47328 * 299.99999 * 15 14 13 19 19 C 1.34848 * 107.41576 * 359.56846 * 14 13 12 20 20 N 1.36337 * 125.89407 * 274.98234 * 12 11 2 21 21 H 0.97006 * 125.63329 * 359.97438 * 20 12 11 22 22 H 1.08995 * 109.46977 * 274.21344 * 1 2 3 23 23 H 1.09004 * 109.46955 * 34.20976 * 1 2 3 24 24 H 1.08997 * 109.46875 * 154.21289 * 1 2 3 25 25 H 0.96993 * 119.99864 * 180.02562 * 6 5 3 26 26 H 1.09011 * 109.47076 * 150.00167 * 11 2 1 27 27 H 1.08996 * 109.47380 * 30.00464 * 11 2 1 28 28 H 1.08002 * 126.29484 * 359.97438 * 13 12 11 29 29 H 1.08997 * 109.47226 * 60.00152 * 16 15 14 30 30 H 1.09004 * 109.47012 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.47104 * 299.99717 * 16 15 14 32 32 H 1.09001 * 109.47359 * 59.99803 * 17 15 14 33 33 H 1.08995 * 109.47165 * 180.02562 * 17 15 14 34 34 H 1.09005 * 109.47189 * 300.00614 * 17 15 14 35 35 H 1.08998 * 109.47044 * 59.99743 * 18 15 14 36 36 H 1.08995 * 109.47315 * 179.97438 * 18 15 14 37 37 H 1.09011 * 109.46774 * 300.00366 * 18 15 14 38 38 H 1.07998 * 125.89291 * 180.15679 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5339 2.3430 0.4571 6 7 0.3843 2.2691 1.0938 7 14 2.3367 4.0048 0.1688 8 1 3.6138 3.8169 -0.5653 9 1 1.4267 4.8616 -0.6332 10 1 2.6074 4.6571 1.4750 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4215 13 6 1.6829 -2.5529 2.1354 14 6 2.2693 -2.6797 3.4102 15 6 1.7555 -3.5230 4.5486 16 6 1.7081 -4.9897 4.1157 17 6 2.6880 -3.3771 5.7528 18 6 0.3491 -3.0589 4.9328 19 6 3.3764 -1.9100 3.4236 20 7 3.4897 -1.3052 2.2069 21 1 4.1948 -0.6933 1.9433 22 1 -0.3633 0.0755 1.0248 23 1 -0.3633 0.8499 -0.5778 24 1 -0.3633 -0.9253 -0.4471 25 1 -0.0462 3.0775 1.4129 26 1 3.1500 -1.1386 -0.5133 27 1 1.6085 -2.0285 -0.5130 28 1 0.7827 -3.0426 1.7944 29 1 2.7100 -5.3203 3.8421 30 1 1.3368 -5.5997 4.9393 31 1 1.0439 -5.0940 3.2577 32 1 2.7223 -2.3322 6.0613 33 1 2.3166 -3.9874 6.5759 34 1 3.6898 -3.7079 5.4787 35 1 -0.3150 -3.1632 4.0748 36 1 -0.0227 -3.6692 5.7559 37 1 0.3830 -2.0139 5.2412 38 1 4.0539 -1.7895 4.2560 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249478941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:31 Heat of formation + Delta-G solvation = 50.054640 kcal Electronic energy + Delta-G solvation = -17155.622269 eV Core-core repulsion = 14613.027594 eV Total energy + Delta-G solvation = -2542.594674 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.48563 -36.42197 -35.26523 -31.48913 -29.61356 -28.68814 -27.11852 -26.87092 -25.87334 -24.73745 -21.24488 -21.17720 -19.35061 -17.44305 -16.86352 -16.46484 -14.79936 -14.12880 -14.06044 -13.76101 -13.63800 -13.30383 -13.10269 -12.62646 -12.29673 -11.97603 -11.92930 -11.65240 -11.48464 -11.37334 -11.03958 -10.90291 -10.68216 -10.61168 -10.37817 -10.31456 -10.21286 -9.99873 -9.86380 -8.57673 -7.84583 -7.18971 -6.75692 -5.73662 -3.19953 3.10402 3.34291 3.41128 3.42996 3.73672 4.18520 4.48917 5.20535 5.21149 5.37227 5.42871 5.74162 5.79139 5.81875 5.85169 5.93031 6.04540 6.11020 6.13806 6.16726 6.20306 6.30791 6.41126 6.50729 6.56628 6.62028 6.71543 6.82110 7.02906 7.20503 7.42195 7.73412 7.83372 7.85832 8.01536 8.37184 8.45309 9.21629 9.84767 10.34729 11.30345 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032321 B = 0.006458 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.102804 B = 4334.619349 C = 4432.598868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.592 5.592 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.279 1.279 9 H -0.288 1.288 10 H -0.291 1.291 11 C 0.205 3.795 12 C 0.040 3.960 13 C -0.208 4.208 14 C -0.154 4.154 15 C 0.007 3.993 16 C -0.131 4.131 17 C -0.138 4.138 18 C -0.133 4.133 19 C -0.036 4.036 20 N -0.546 5.546 21 H 0.409 0.591 22 H 0.029 0.971 23 H 0.044 0.956 24 H -0.002 1.002 25 H 0.252 0.748 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -10.857 5.084 12.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.313 5.313 3 C -0.387 4.387 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.545 5.545 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.215 1.215 10 H -0.218 1.218 11 C 0.076 3.924 12 C -0.078 4.078 13 C -0.233 4.233 14 C -0.161 4.161 15 C 0.006 3.994 16 C -0.189 4.189 17 C -0.196 4.196 18 C -0.190 4.190 19 C -0.167 4.167 20 N -0.139 5.139 21 H 0.244 0.756 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.016 0.984 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.688 -10.597 5.071 12.313 hybrid contribution 0.630 1.435 0.087 1.569 sum 4.318 -9.162 5.158 11.366 Atomic orbital electron populations 1.20794 0.82196 0.95492 0.99429 1.44079 1.02072 1.00185 1.84970 1.19200 0.98128 0.85353 1.36065 0.91570 1.25066 0.97685 0.98497 0.98232 1.70096 1.17644 1.26897 1.39823 0.86220 0.78684 0.84457 0.77371 1.20378 1.21510 1.21803 1.19536 0.96188 0.88829 0.87802 1.22007 0.89953 0.98208 0.97621 1.20253 1.02172 1.06345 0.94490 1.19114 0.97684 1.03769 0.95534 1.18804 0.94707 0.93633 0.92237 1.21803 1.01460 0.95055 1.00541 1.21860 0.99173 1.01406 0.97138 1.21804 0.95807 1.00863 1.00536 1.21354 1.02464 1.03216 0.89668 1.41853 1.23017 1.37420 1.11615 0.75599 0.95229 0.93715 0.98382 0.93783 0.93434 0.92039 0.86322 0.93081 0.93541 0.92670 0.92738 0.93241 0.92908 0.92600 0.93600 0.92767 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.17 9.01 59.85 0.54 4.71 16 2 N -0.59 -14.90 2.91 -182.50 -0.53 -15.43 16 3 C -0.26 -6.99 9.67 -15.06 -0.15 -7.13 16 4 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 5 C 0.00 0.12 5.13 -17.43 -0.09 0.03 16 6 N -0.90 -26.51 10.59 55.49 0.59 -25.92 16 7 Si 0.90 21.78 29.57 -169.99 -5.03 16.76 16 8 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 C 0.20 4.27 6.24 -5.20 -0.03 4.24 16 12 C 0.04 0.80 6.75 -81.79 -0.55 0.25 16 13 C -0.21 -4.06 10.26 -39.78 -0.41 -4.47 16 14 C -0.15 -2.71 4.73 -104.82 -0.50 -3.20 16 15 C 0.01 0.10 0.95 -155.66 -0.15 -0.05 16 16 C -0.13 -1.69 8.37 37.16 0.31 -1.38 16 17 C -0.14 -1.73 7.38 37.16 0.27 -1.46 16 18 C -0.13 -1.94 8.37 37.16 0.31 -1.63 16 19 C -0.04 -0.63 10.89 -16.75 -0.18 -0.81 16 20 N -0.55 -10.21 6.07 -9.12 -0.06 -10.27 16 21 H 0.41 7.02 8.96 -40.82 -0.37 6.65 16 22 H 0.03 0.82 7.42 -51.93 -0.39 0.43 16 23 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 24 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.05 0.94 8.03 -51.92 -0.42 0.52 16 27 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 28 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.73 8.04 -51.93 -0.42 0.31 16 32 H 0.05 0.70 7.95 -51.93 -0.41 0.29 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.62 7.94 -51.93 -0.41 0.21 16 35 H 0.05 0.85 8.04 -51.93 -0.42 0.44 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.15 2.15 7.29 -52.49 -0.38 1.77 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -30.28 309.69 -7.46 -37.74 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.48 Total: 3.36 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.62 Total: -10.90 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.00 Total: -51.63 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.28 -7.46 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249478941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.798 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds