Wall clock time and date at job start Sun Mar 29 2020 21:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99889 * 2 1 4 4 H 1.07998 * 120.00058 * 202.35235 * 3 2 1 5 5 C 1.38817 * 120.00368 * 22.34840 * 3 2 1 6 6 N 1.31624 * 119.99645 * 11.35294 * 5 3 2 7 7 Si 1.86795 * 120.00275 * 191.34635 * 5 3 2 8 8 H 1.48493 * 109.47170 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46946 * 120.00481 * 7 5 3 10 10 H 1.48496 * 109.47194 * 240.00052 * 7 5 3 11 11 C 1.46492 * 119.99756 * 179.97438 * 2 1 3 12 12 C 1.50698 * 109.47581 * 269.99704 * 11 2 1 13 13 C 1.34847 * 125.88687 * 95.00013 * 12 11 2 14 14 C 1.40893 * 107.41745 * 180.24696 * 13 12 11 15 15 C 1.50699 * 126.29307 * 179.70260 * 14 13 12 16 16 C 1.52998 * 109.47065 * 60.00010 * 15 14 13 17 17 C 1.52999 * 109.47209 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47328 * 299.99999 * 15 14 13 19 19 C 1.34848 * 107.41576 * 359.56846 * 14 13 12 20 20 N 1.36337 * 125.89407 * 274.98234 * 12 11 2 21 21 H 0.97006 * 125.63329 * 359.97438 * 20 12 11 22 22 H 1.08995 * 109.46977 * 274.21344 * 1 2 3 23 23 H 1.09004 * 109.46955 * 34.20976 * 1 2 3 24 24 H 1.08997 * 109.46875 * 154.21289 * 1 2 3 25 25 H 0.96993 * 119.99864 * 180.02562 * 6 5 3 26 26 H 1.09011 * 109.47076 * 150.00167 * 11 2 1 27 27 H 1.08996 * 109.47380 * 30.00464 * 11 2 1 28 28 H 1.08002 * 126.29484 * 359.97438 * 13 12 11 29 29 H 1.08997 * 109.47226 * 60.00152 * 16 15 14 30 30 H 1.09004 * 109.47012 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.47104 * 299.99717 * 16 15 14 32 32 H 1.09001 * 109.47359 * 59.99803 * 17 15 14 33 33 H 1.08995 * 109.47165 * 180.02562 * 17 15 14 34 34 H 1.09005 * 109.47189 * 300.00614 * 17 15 14 35 35 H 1.08998 * 109.47044 * 59.99743 * 18 15 14 36 36 H 1.08995 * 109.47315 * 179.97438 * 18 15 14 37 37 H 1.09011 * 109.46774 * 300.00366 * 18 15 14 38 38 H 1.07998 * 125.89291 * 180.15679 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5339 2.3430 0.4571 6 7 0.3843 2.2691 1.0938 7 14 2.3367 4.0048 0.1688 8 1 3.6138 3.8169 -0.5653 9 1 1.4267 4.8616 -0.6332 10 1 2.6074 4.6571 1.4750 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4215 13 6 1.6829 -2.5529 2.1354 14 6 2.2693 -2.6797 3.4102 15 6 1.7555 -3.5230 4.5486 16 6 1.7081 -4.9897 4.1157 17 6 2.6880 -3.3771 5.7528 18 6 0.3491 -3.0589 4.9328 19 6 3.3764 -1.9100 3.4236 20 7 3.4897 -1.3052 2.2069 21 1 4.1948 -0.6933 1.9433 22 1 -0.3633 0.0755 1.0248 23 1 -0.3633 0.8499 -0.5778 24 1 -0.3633 -0.9253 -0.4471 25 1 -0.0462 3.0775 1.4129 26 1 3.1500 -1.1386 -0.5133 27 1 1.6085 -2.0285 -0.5130 28 1 0.7827 -3.0426 1.7944 29 1 2.7100 -5.3203 3.8421 30 1 1.3368 -5.5997 4.9393 31 1 1.0439 -5.0940 3.2577 32 1 2.7223 -2.3322 6.0613 33 1 2.3166 -3.9874 6.5759 34 1 3.6898 -3.7079 5.4787 35 1 -0.3150 -3.1632 4.0748 36 1 -0.0227 -3.6692 5.7559 37 1 0.3830 -2.0139 5.2412 38 1 4.0539 -1.7895 4.2560 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249478941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:31 Heat of formation + Delta-G solvation = 33.443836 kcal Electronic energy + Delta-G solvation = -17156.342567 eV Core-core repulsion = 14613.027594 eV Total energy + Delta-G solvation = -2543.314973 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91662 -37.76130 -37.03233 -33.46506 -31.09540 -30.29291 -28.27040 -27.95611 -27.90587 -26.36701 -23.14824 -22.45807 -20.86884 -18.78604 -18.76339 -18.02763 -16.76325 -15.65563 -15.36902 -15.30964 -15.00596 -14.75617 -14.75280 -14.13075 -13.92386 -13.44296 -13.15926 -13.00127 -12.95203 -12.83914 -12.63335 -12.49154 -12.44225 -12.20686 -12.02727 -11.88222 -11.70274 -11.51608 -11.36682 -10.67781 -9.29373 -8.89415 -8.57707 -7.83205 -5.31848 1.42777 1.44380 1.54270 1.64511 2.25891 2.51100 2.76960 3.32761 3.86257 4.08236 4.10110 4.30564 4.47151 4.49952 4.56739 4.73583 4.85019 4.86840 4.89434 4.91232 4.99425 5.01552 5.13440 5.14433 5.25142 5.30878 5.33411 5.43366 5.60037 5.60893 5.65613 5.73651 5.83305 6.28768 6.40803 6.54172 7.02578 7.13190 7.84381 8.30152 9.20022 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032321 B = 0.006458 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.102804 B = 4334.619349 C = 4432.598868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.606 5.606 3 C -0.257 4.257 4 H 0.074 0.926 5 C -0.054 4.054 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.263 1.263 9 H -0.292 1.292 10 H -0.296 1.296 11 C 0.205 3.795 12 C 0.013 3.987 13 C -0.218 4.218 14 C -0.163 4.163 15 C 0.003 3.997 16 C -0.126 4.126 17 C -0.135 4.135 18 C -0.131 4.131 19 C -0.035 4.035 20 N -0.549 5.549 21 H 0.414 0.586 22 H -0.004 1.004 23 H 0.019 0.981 24 H 0.029 0.971 25 H 0.245 0.755 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -11.943 5.804 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.328 5.328 3 C -0.388 4.388 4 H 0.092 0.908 5 C -0.249 4.249 6 N -0.583 5.583 7 Si 0.796 3.204 8 H -0.187 1.187 9 H -0.219 1.219 10 H -0.224 1.224 11 C 0.079 3.921 12 C -0.104 4.104 13 C -0.243 4.243 14 C -0.170 4.170 15 C 0.003 3.997 16 C -0.184 4.184 17 C -0.192 4.192 18 C -0.188 4.188 19 C -0.166 4.166 20 N -0.143 5.143 21 H 0.250 0.750 22 H 0.015 0.985 23 H 0.038 0.962 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.135 0.865 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.067 -11.714 5.776 14.009 hybrid contribution 0.229 1.655 -0.134 1.676 sum 5.296 -10.059 5.642 12.691 Atomic orbital electron populations 1.20496 0.82783 0.95892 0.97200 1.44267 1.02067 1.01306 1.85190 1.19547 0.98285 0.86240 1.34687 0.90803 1.25821 0.98432 1.01866 0.98742 1.70282 1.19271 1.27159 1.41608 0.85200 0.78228 0.80183 0.76805 1.18703 1.21937 1.22385 1.19620 0.96479 0.87416 0.88628 1.21805 0.91321 0.99683 0.97571 1.20460 1.02019 1.06248 0.95572 1.19539 0.97541 1.04141 0.95764 1.18922 0.94757 0.94024 0.92020 1.21752 1.01493 0.94137 1.00996 1.21826 0.99183 1.01455 0.96719 1.21787 0.96000 1.00181 1.00843 1.21894 1.02759 1.02225 0.89680 1.41914 1.22878 1.37565 1.11950 0.75012 0.98545 0.96211 0.95230 0.94530 0.92324 0.90373 0.86506 0.92891 0.91316 0.93680 0.93463 0.91218 0.92050 0.94081 0.90963 0.94732 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.28 9.01 127.77 1.15 10.43 16 2 N -0.61 -30.47 2.91 -731.31 -2.13 -32.60 16 3 C -0.26 -13.88 9.67 84.03 0.81 -13.07 16 4 H 0.07 3.80 7.84 -2.91 -0.02 3.77 16 5 C -0.05 -3.00 5.13 84.86 0.44 -2.57 16 6 N -0.94 -56.46 10.59 21.65 0.23 -56.23 16 7 Si 0.97 45.05 29.57 68.60 2.03 47.08 16 8 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 10 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 11 C 0.21 8.39 6.24 85.63 0.53 8.93 16 12 C 0.01 0.52 6.75 41.08 0.28 0.80 16 13 C -0.22 -8.41 10.26 22.14 0.23 -8.18 16 14 C -0.16 -5.53 4.73 -19.99 -0.09 -5.62 16 15 C 0.00 0.09 0.95 -52.93 -0.05 0.04 16 16 C -0.13 -2.95 8.37 71.98 0.60 -2.34 16 17 C -0.13 -2.97 7.38 71.98 0.53 -2.43 16 18 C -0.13 -3.65 8.37 71.98 0.60 -3.05 16 19 C -0.03 -1.16 10.89 83.21 0.91 -0.25 16 20 N -0.55 -19.95 6.07 -182.78 -1.11 -21.06 16 21 H 0.41 13.75 8.96 -92.70 -0.83 12.92 16 22 H 0.00 -0.22 7.42 -2.39 -0.02 -0.24 16 23 H 0.02 1.07 7.19 -2.38 -0.02 1.05 16 24 H 0.03 1.29 7.84 -2.39 -0.02 1.27 16 25 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.06 2.24 8.03 -2.38 -0.02 2.22 16 27 H 0.08 2.88 7.86 -2.39 -0.02 2.86 16 28 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.04 1.12 8.04 -2.38 -0.02 1.11 16 32 H 0.05 1.10 7.95 -2.39 -0.02 1.08 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.24 7.94 -2.38 -0.02 1.23 16 35 H 0.04 1.24 8.04 -2.39 -0.02 1.22 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.18 4.66 7.29 -2.91 -0.02 4.64 16 Total: -1.00 -64.68 309.69 5.14 -59.54 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.19 Total: 20.59 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.94 Total: -17.32 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -3.01 Total: -109.89 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.68 5.14 -59.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249478941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.980 kcal (2) G-P(sol) polarization free energy of solvation -64.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds