Wall clock time and date at job start Sun Mar 29 2020 21:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46907 * 2 1 4 4 C 1.52998 * 109.46879 * 120.00119 * 2 1 3 5 5 C 1.53002 * 109.46836 * 175.00181 * 4 2 1 6 6 N 1.46506 * 109.46877 * 179.97438 * 5 4 2 7 7 C 1.34949 * 126.03292 * 124.99906 * 6 5 4 8 8 C 1.35318 * 107.74247 * 179.97438 * 7 6 5 9 9 C 1.50700 * 126.04120 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47215 * 270.00148 * 9 8 7 11 11 C 1.50700 * 109.47215 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99732 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00239 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00238 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46879 * 89.99765 * 15 13 11 17 17 H 1.48493 * 109.47302 * 209.99794 * 15 13 11 18 18 H 1.48499 * 109.47236 * 330.00138 * 15 13 11 19 19 C 1.39875 * 107.92186 * 0.02562 * 8 7 6 20 20 N 1.30839 * 108.20184 * 359.97438 * 19 8 7 21 21 H 1.08995 * 109.47486 * 299.99766 * 1 2 3 22 22 H 1.08997 * 109.47143 * 59.99858 * 1 2 3 23 23 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47029 * 239.99958 * 2 1 3 25 25 H 1.09002 * 109.46853 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47335 * 300.00025 * 3 2 1 27 27 H 1.09008 * 109.47150 * 60.00408 * 3 2 1 28 28 H 1.09001 * 109.47550 * 55.00145 * 4 2 1 29 29 H 1.08995 * 109.47323 * 294.99954 * 4 2 1 30 30 H 1.08998 * 109.47319 * 60.00138 * 5 4 2 31 31 H 1.09005 * 109.47113 * 299.99840 * 5 4 2 32 32 H 1.07997 * 126.13040 * 0.03555 * 7 6 5 33 33 H 1.09003 * 109.47079 * 30.00095 * 9 8 7 34 34 H 1.09002 * 109.47262 * 149.99741 * 9 8 7 35 35 H 1.09003 * 109.47054 * 299.99962 * 10 9 8 36 36 H 1.08997 * 109.46902 * 59.99799 * 10 9 8 37 37 H 0.96996 * 120.00379 * 180.02562 * 14 13 11 38 38 H 1.08003 * 125.89835 * 179.73925 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0532 -1.5212 2.3845 7 6 4.8323 -2.6229 2.4030 8 6 5.0608 -2.9446 3.6974 9 6 5.8838 -4.1069 4.1902 10 6 4.9849 -5.3336 4.3577 11 6 5.8077 -6.4957 4.8511 12 1 6.8660 -6.3718 5.0272 13 6 5.2097 -7.7173 5.0768 14 7 3.9210 -7.8683 4.8620 15 14 6.2297 -9.1580 5.6877 16 1 6.2357 -9.1659 7.1728 17 1 5.6427 -10.4273 5.1884 18 1 7.6219 -9.0261 5.1879 19 6 4.3982 -2.0076 4.4972 20 7 3.7941 -1.1538 3.7112 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1584 2.1369 30 1 3.9995 0.1675 1.1421 31 1 3.8532 -1.3940 0.3002 32 1 5.2071 -3.1524 1.5396 33 1 6.6694 -4.3281 3.4677 34 1 6.3339 -3.8524 5.1498 35 1 4.1993 -5.1124 5.0803 36 1 4.5348 -5.5879 3.3982 37 1 3.5001 -8.7276 5.0211 38 1 4.3843 -1.9939 5.5771 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:19 Heat of formation + Delta-G solvation = 40.942564 kcal Electronic energy + Delta-G solvation = -16048.428741 eV Core-core repulsion = 13505.438937 eV Total energy + Delta-G solvation = -2542.989804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72192 -37.16247 -34.10861 -32.80968 -31.43280 -29.31345 -27.84654 -27.41404 -24.78927 -23.63292 -21.26332 -20.47524 -20.13493 -19.18149 -16.60875 -16.08069 -15.83801 -14.64733 -14.45169 -14.32890 -14.00973 -13.57317 -13.06091 -12.98377 -12.67371 -12.46554 -12.09976 -12.05191 -11.87457 -11.55403 -11.22632 -10.94976 -10.93874 -10.83340 -10.82201 -10.56766 -10.22429 -9.64325 -9.51668 -9.00271 -8.93734 -8.27732 -7.65069 -5.93003 -3.95483 2.34233 2.87191 3.35839 3.39317 3.42086 3.45921 4.45177 4.51569 4.62115 4.68659 4.81925 5.14904 5.22388 5.29822 5.39258 5.42309 5.42417 5.45980 5.59872 5.64798 5.76438 5.80147 5.95773 6.07326 6.08680 6.11773 6.22656 6.47195 6.81926 6.87974 7.08302 7.27585 7.50743 7.78525 7.94693 8.09796 8.17635 8.50420 9.12691 9.68136 11.18032 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.041322 B = 0.004014 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.446879 B = 6973.475535 C = 7342.423749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.128 4.128 5 C 0.138 3.862 6 N -0.382 5.382 7 C 0.038 3.962 8 C -0.206 4.206 9 C -0.040 4.040 10 C 0.029 3.971 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.048 3.952 20 N -0.307 5.307 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.167 0.833 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.259 0.741 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 16.059 -10.099 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.166 4.166 5 C 0.017 3.983 6 N -0.166 5.166 7 C -0.106 4.106 8 C -0.217 4.217 9 C -0.079 4.079 10 C -0.008 4.008 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.138 4.138 20 N -0.128 5.128 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.184 0.816 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.012 17.040 -10.291 20.307 hybrid contribution 0.919 -1.710 0.348 1.972 sum -3.093 15.330 -9.944 18.532 Atomic orbital electron populations 1.21822 0.94858 1.01985 1.01763 1.21075 0.96179 0.96289 0.97803 1.21924 1.01068 0.95939 1.01883 1.21944 0.93885 1.01842 0.98912 1.21664 0.95337 0.97503 0.83816 1.48454 1.40390 1.22560 1.05181 1.22273 0.97874 0.90957 0.99465 1.20585 1.07704 1.01726 0.91681 1.20115 0.96656 0.92012 0.99114 1.19070 0.94509 0.90251 0.96961 1.21316 0.95147 0.95318 1.44021 0.92658 1.25027 0.94884 0.98805 0.95777 1.69978 1.09797 1.24423 1.49338 0.86624 0.80431 0.82081 0.79032 1.20705 1.21335 1.19892 1.23786 0.96654 0.93426 0.99899 1.77158 1.24451 1.24508 0.86725 0.92556 0.92665 0.92523 0.91045 0.92533 0.92707 0.92451 0.91217 0.90392 0.90303 0.89228 0.81570 0.92937 0.92583 0.96624 0.96844 0.93120 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 2 C -0.09 -0.78 2.92 -90.62 -0.26 -1.05 16 3 C -0.15 -1.13 8.95 37.16 0.33 -0.80 16 4 C -0.13 -1.38 4.87 -26.73 -0.13 -1.51 16 5 C 0.14 1.56 6.26 -4.04 -0.03 1.54 16 6 N -0.38 -6.04 3.68 -61.36 -0.23 -6.27 16 7 C 0.04 0.65 11.36 -17.22 -0.20 0.45 16 8 C -0.21 -3.95 5.35 -105.05 -0.56 -4.51 16 9 C -0.04 -0.86 5.64 -27.88 -0.16 -1.01 16 10 C 0.03 0.78 4.96 -27.88 -0.14 0.64 16 11 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.05 0.88 11.96 -17.36 -0.21 0.67 16 20 N -0.31 -5.48 12.42 30.63 0.38 -5.10 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.41 6.56 -51.93 -0.34 0.06 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.80 6.56 -51.93 -0.34 0.46 16 31 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.17 2.38 8.06 -52.49 -0.42 1.95 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 38 H 0.18 2.85 8.06 -52.48 -0.42 2.43 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -32.30 317.34 -7.33 -39.63 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.56 Total: -3.11 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.42 Total: -20.08 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.89 Total: -38.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.30 -7.33 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.574 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds