Wall clock time and date at job start Sun Mar 29 2020 21:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46907 * 2 1 4 4 C 1.52998 * 109.46879 * 120.00119 * 2 1 3 5 5 C 1.53002 * 109.46836 * 175.00181 * 4 2 1 6 6 N 1.46506 * 109.46877 * 179.97438 * 5 4 2 7 7 C 1.34949 * 126.03292 * 124.99906 * 6 5 4 8 8 C 1.35318 * 107.74247 * 179.97438 * 7 6 5 9 9 C 1.50700 * 126.04120 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47215 * 270.00148 * 9 8 7 11 11 C 1.50700 * 109.47215 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99732 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00239 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99840 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00238 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46879 * 89.99765 * 15 13 11 17 17 H 1.48493 * 109.47302 * 209.99794 * 15 13 11 18 18 H 1.48499 * 109.47236 * 330.00138 * 15 13 11 19 19 C 1.39875 * 107.92186 * 0.02562 * 8 7 6 20 20 N 1.30839 * 108.20184 * 359.97438 * 19 8 7 21 21 H 1.08995 * 109.47486 * 299.99766 * 1 2 3 22 22 H 1.08997 * 109.47143 * 59.99858 * 1 2 3 23 23 H 1.09005 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47029 * 239.99958 * 2 1 3 25 25 H 1.09002 * 109.46853 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47335 * 300.00025 * 3 2 1 27 27 H 1.09008 * 109.47150 * 60.00408 * 3 2 1 28 28 H 1.09001 * 109.47550 * 55.00145 * 4 2 1 29 29 H 1.08995 * 109.47323 * 294.99954 * 4 2 1 30 30 H 1.08998 * 109.47319 * 60.00138 * 5 4 2 31 31 H 1.09005 * 109.47113 * 299.99840 * 5 4 2 32 32 H 1.07997 * 126.13040 * 0.03555 * 7 6 5 33 33 H 1.09003 * 109.47079 * 30.00095 * 9 8 7 34 34 H 1.09002 * 109.47262 * 149.99741 * 9 8 7 35 35 H 1.09003 * 109.47054 * 299.99962 * 10 9 8 36 36 H 1.08997 * 109.46902 * 59.99799 * 10 9 8 37 37 H 0.96996 * 120.00379 * 180.02562 * 14 13 11 38 38 H 1.08003 * 125.89835 * 179.73925 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0532 -1.5212 2.3845 7 6 4.8323 -2.6229 2.4030 8 6 5.0608 -2.9446 3.6974 9 6 5.8838 -4.1069 4.1902 10 6 4.9849 -5.3336 4.3577 11 6 5.8077 -6.4957 4.8511 12 1 6.8660 -6.3718 5.0272 13 6 5.2097 -7.7173 5.0768 14 7 3.9210 -7.8683 4.8620 15 14 6.2297 -9.1580 5.6877 16 1 6.2357 -9.1659 7.1728 17 1 5.6427 -10.4273 5.1884 18 1 7.6219 -9.0261 5.1879 19 6 4.3982 -2.0076 4.4972 20 7 3.7941 -1.1538 3.7112 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1584 2.1369 30 1 3.9995 0.1675 1.1421 31 1 3.8532 -1.3940 0.3002 32 1 5.2071 -3.1524 1.5396 33 1 6.6694 -4.3281 3.4677 34 1 6.3339 -3.8524 5.1498 35 1 4.1993 -5.1124 5.0803 36 1 4.5348 -5.5879 3.3982 37 1 3.5001 -8.7276 5.0211 38 1 4.3843 -1.9939 5.5771 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:18 Heat of formation + Delta-G solvation = 23.071872 kcal Electronic energy + Delta-G solvation = -16049.203672 eV Core-core repulsion = 13505.438937 eV Total energy + Delta-G solvation = -2543.764735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.05635 -37.96790 -35.95492 -34.27276 -33.13698 -30.63033 -29.34540 -28.03580 -26.56670 -24.78561 -23.12771 -21.62929 -21.13108 -20.50484 -18.50789 -17.60731 -16.76245 -16.47276 -15.57159 -15.46434 -15.07786 -14.86145 -14.49379 -14.34556 -14.05885 -13.66089 -13.50660 -13.20227 -13.02423 -12.79612 -12.66766 -12.54960 -12.33237 -11.92554 -11.80681 -11.68616 -11.57092 -11.50660 -11.32392 -11.07043 -10.50732 -10.23463 -9.10686 -8.14532 -6.26339 1.00760 1.42970 1.44592 1.55673 1.71248 1.94762 2.45375 3.17943 3.53111 3.82983 3.95151 4.00398 4.10442 4.26002 4.33979 4.47459 4.53859 4.65115 4.74083 4.77635 4.85712 4.98441 5.02443 5.03231 5.07089 5.07715 5.25520 5.26503 5.29301 5.41635 5.47877 5.57534 5.78862 5.86581 5.92463 6.24310 6.30918 6.80657 6.92173 7.42953 8.96829 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.041322 B = 0.004014 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.446879 B = 6973.475535 C = 7342.423749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.121 4.121 5 C 0.128 3.872 6 N -0.375 5.375 7 C 0.049 3.951 8 C -0.241 4.241 9 C -0.022 4.022 10 C 0.037 3.963 11 C -0.540 4.540 12 H 0.064 0.936 13 C -0.003 4.003 14 N -0.936 5.936 15 Si 0.966 3.034 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.260 1.260 19 C 0.036 3.964 20 N -0.323 5.323 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.195 0.805 33 H 0.062 0.938 34 H 0.058 0.942 35 H -0.017 1.017 36 H -0.013 1.013 37 H 0.262 0.738 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 16.459 -11.370 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.207 4.207 4 C -0.159 4.159 5 C 0.008 3.992 6 N -0.158 5.158 7 C -0.097 4.097 8 C -0.252 4.252 9 C -0.061 4.061 10 C 0.000 4.000 11 C -0.578 4.578 12 H 0.082 0.918 13 C -0.200 4.200 14 N -0.577 5.577 15 Si 0.790 3.210 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.184 1.184 19 C -0.149 4.149 20 N -0.145 5.145 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.212 0.788 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.001 0.999 36 H 0.005 0.995 37 H 0.070 0.930 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.923 17.475 -11.569 21.161 hybrid contribution 0.510 -1.773 0.674 1.964 sum -2.413 15.703 -10.895 19.264 Atomic orbital electron populations 1.21838 0.94819 1.01709 1.02198 1.21051 0.96191 0.96687 0.96771 1.21916 1.01398 0.95199 1.02160 1.21867 0.93663 1.00794 0.99595 1.22118 0.95478 0.98573 0.82990 1.48837 1.39249 1.22112 1.05609 1.22668 0.96730 0.90730 0.99567 1.20487 1.09553 1.02126 0.93068 1.19789 0.95983 0.90582 0.99761 1.18933 0.94328 0.92415 0.94348 1.21773 0.95814 0.96266 1.43974 0.91784 1.26009 0.96075 1.02108 0.95819 1.70125 1.11783 1.25345 1.50447 0.85442 0.79075 0.77906 0.78581 1.19913 1.20948 1.18426 1.24008 0.96692 0.93483 1.00710 1.77115 1.24754 1.24827 0.87806 0.93219 0.91158 0.93182 0.89597 0.91977 0.91361 0.93293 0.93091 0.92363 0.88581 0.86331 0.78846 0.91970 0.92297 0.99872 0.99502 0.92952 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.19 71.98 0.66 -1.53 16 2 C -0.09 -1.29 2.92 -10.79 -0.03 -1.32 16 3 C -0.15 -1.90 8.95 71.98 0.64 -1.26 16 4 C -0.12 -2.51 4.87 30.59 0.15 -2.36 16 5 C 0.13 2.61 6.26 86.38 0.54 3.16 16 6 N -0.37 -11.37 3.68 -348.04 -1.28 -12.65 16 7 C 0.05 1.59 11.36 83.54 0.95 2.54 16 8 C -0.24 -9.21 5.35 -20.14 -0.11 -9.32 16 9 C -0.02 -0.96 5.64 29.85 0.17 -0.79 16 10 C 0.04 2.01 4.96 29.85 0.15 2.16 16 11 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 12 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 15 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 19 C 0.04 1.32 11.96 85.24 1.02 2.34 16 20 N -0.32 -11.44 12.42 -57.02 -0.71 -12.15 16 21 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 0.72 6.56 -2.39 -0.02 0.70 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.69 6.56 -2.39 -0.02 1.68 16 31 H 0.12 1.77 8.07 -2.38 -0.02 1.75 16 32 H 0.19 5.06 8.06 -2.91 -0.02 5.04 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 35 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 36 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.19 6.16 8.06 -2.91 -0.02 6.14 16 Total: -1.00 -69.97 317.34 6.16 -63.81 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.00 Total: 9.32 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 4.84 Total: -36.99 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.70 Total: -82.83 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.97 6.16 -63.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.886 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds