Wall clock time and date at job start Sun Mar 29 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53461 * 1 3 3 C 1.54081 * 107.59960 * 2 1 4 4 C 1.49642 * 109.18513 * 116.96666 * 2 1 3 5 5 C 1.29286 * 124.71929 * 129.58725 * 4 2 1 6 6 C 1.50327 * 118.96637 * 177.98474 * 5 4 2 7 7 C 1.52997 * 109.47014 * 94.99797 * 6 5 4 8 8 C 1.50701 * 109.46982 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99936 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00225 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99780 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47400 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47034 * 120.00188 * 12 10 8 15 15 H 1.48498 * 109.47226 * 239.99985 * 12 10 8 16 16 C 1.50102 * 122.35772 * 357.99609 * 5 4 2 17 17 C 1.53038 * 109.01117 * 330.09110 * 16 5 4 18 18 C 1.52972 * 109.83790 * 293.04752 * 17 16 5 19 19 C 1.53836 * 108.41339 * 174.71313 * 17 16 5 20 20 C 1.51980 * 109.78557 * 242.29644 * 2 1 3 21 21 H 1.09002 * 109.47366 * 303.03374 * 1 2 3 22 22 H 1.09001 * 109.46960 * 63.03688 * 1 2 3 23 23 H 1.09004 * 109.47407 * 183.03168 * 1 2 3 24 24 H 1.09005 * 109.46810 * 177.74238 * 3 2 1 25 25 H 1.08998 * 109.46992 * 297.74219 * 3 2 1 26 26 H 1.09002 * 109.47219 * 57.74176 * 3 2 1 27 27 H 1.08282 * 117.78797 * 308.61172 * 4 2 1 28 28 H 1.09003 * 109.46923 * 214.99476 * 6 5 4 29 29 H 1.08997 * 109.47132 * 334.99497 * 6 5 4 30 30 H 1.08996 * 109.47331 * 299.99414 * 7 6 5 31 31 H 1.08997 * 109.47416 * 59.99874 * 7 6 5 32 32 H 0.97001 * 120.00710 * 180.02562 * 11 10 8 33 33 H 1.08898 * 109.46500 * 210.34064 * 16 5 4 34 34 H 1.08857 * 109.53534 * 89.95360 * 16 5 4 35 35 H 1.08995 * 109.47465 * 181.90519 * 18 17 16 36 36 H 1.08999 * 109.46974 * 301.90382 * 18 17 16 37 37 H 1.09003 * 109.46914 * 61.89943 * 18 17 16 38 38 H 1.09005 * 109.46892 * 300.39057 * 19 17 16 39 39 H 1.09007 * 109.47270 * 60.38568 * 19 17 16 40 40 H 1.08995 * 109.47799 * 180.38764 * 19 17 16 41 41 H 1.10004 * 109.01759 * 21.29757 * 20 2 1 42 42 H 1.10013 * 108.96758 * 137.49843 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5346 0.0000 0.0000 3 6 2.0005 1.4687 0.0000 4 6 2.0264 -0.6409 1.2596 5 6 2.9079 -1.5853 1.3098 6 6 3.3425 -2.1051 2.6517 7 6 2.5188 -3.3436 3.0100 8 6 2.9549 -3.8651 4.3550 9 1 3.7412 -3.3635 4.8996 10 6 2.3499 -4.9825 4.8903 11 7 1.3928 -5.5936 4.2270 12 14 2.8910 -5.6293 6.5571 13 1 3.9773 -4.7700 7.0928 14 1 1.7384 -5.6103 7.4933 15 1 3.3870 -7.0213 6.4108 16 6 3.5155 -2.1834 0.0744 17 6 2.5000 -2.1070 -1.0679 18 6 1.3113 -3.0219 -0.7678 19 6 3.1803 -2.5996 -2.3567 20 6 2.0491 -0.6648 -1.2661 21 1 -0.3634 0.5602 0.8615 22 1 -0.3633 0.4660 -0.9160 23 1 -0.3634 -1.0262 0.0544 24 1 3.0892 1.5045 0.0405 25 1 1.6544 1.9596 -0.9095 26 1 1.5875 1.9809 0.8691 27 1 1.6277 -0.2790 2.1991 28 1 4.3992 -2.3699 2.6139 29 1 3.1878 -1.3348 3.4072 30 1 1.4622 -3.0788 3.0478 31 1 2.6735 -4.1139 2.2545 32 1 0.9670 -6.3795 4.6037 33 1 3.7719 -3.2248 0.2638 34 1 4.4113 -1.6274 -0.1965 35 1 0.6082 -2.9888 -1.6000 36 1 1.6648 -4.0439 -0.6313 37 1 0.8140 -2.6849 0.1417 38 1 4.0436 -1.9710 -2.5750 39 1 3.5064 -3.6313 -2.2239 40 1 2.4731 -2.5459 -3.1843 41 1 1.2586 -0.6397 -2.0308 42 1 2.8919 -0.0782 -1.6609 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:07 Heat of formation + Delta-G solvation = -35.033338 kcal Electronic energy + Delta-G solvation = -17629.820357 eV Core-core repulsion = 15187.076335 eV Total energy + Delta-G solvation = -2442.744023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 236.184 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72757 -34.74878 -34.58357 -32.50381 -29.28440 -27.45460 -26.51111 -26.44370 -26.14076 -24.87933 -21.46720 -19.68963 -19.12737 -16.47261 -16.17381 -15.10627 -14.82629 -14.45354 -14.08243 -13.68036 -13.45411 -12.86940 -12.66744 -12.41989 -12.26838 -12.18540 -12.00124 -11.67310 -11.35485 -11.32046 -11.26809 -11.12470 -10.88726 -10.80782 -10.71381 -10.56549 -10.19786 -9.95493 -9.88597 -9.60103 -9.37520 -8.96077 -8.30789 -7.97993 -5.95835 -3.98079 2.92829 3.32823 3.40283 3.44663 4.49220 4.80721 4.91552 4.98785 5.27467 5.34361 5.39725 5.41013 5.60254 5.70725 5.78893 5.82063 5.86138 5.87415 5.95192 5.99817 6.06345 6.09994 6.12270 6.17516 6.28070 6.30542 6.37599 6.44915 6.50623 6.58320 6.61892 6.75341 6.81329 6.83097 7.08574 7.38152 7.65743 7.74901 7.95024 8.06069 8.47681 9.09582 9.65621 11.15127 Molecular weight = 236.18amu Principal moments of inertia in cm(-1) A = 0.030438 B = 0.006054 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.682186 B = 4623.806651 C = 4920.704544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.021 4.021 3 C -0.136 4.136 4 C -0.173 4.173 5 C -0.090 4.090 6 C -0.084 4.084 7 C 0.033 3.967 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.889 3.111 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.073 4.073 17 C -0.058 4.058 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.092 4.092 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 10.035 -12.170 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 C -0.194 4.194 4 C -0.191 4.191 5 C -0.090 4.090 6 C -0.121 4.121 7 C -0.004 4.004 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.717 3.283 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.110 4.110 17 C -0.058 4.058 18 C -0.196 4.196 19 C -0.199 4.199 20 C -0.130 4.130 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.667 9.900 -12.165 15.698 hybrid contribution 0.177 -0.478 1.027 1.146 sum 0.844 9.422 -11.138 14.613 Atomic orbital electron populations 1.22064 0.94673 1.02062 1.00802 1.19195 0.95083 0.94504 0.93313 1.22151 1.00910 0.95381 1.00926 1.21459 1.00669 1.00124 0.96894 1.21030 0.96558 0.95067 0.96352 1.20816 1.00008 0.99803 0.91465 1.19014 0.94713 0.90827 0.95870 1.21346 1.19448 1.11316 1.03741 0.92743 1.25014 0.95111 0.96811 0.97473 1.69977 1.24989 1.20374 1.38055 0.86581 0.78537 0.78774 0.84387 1.19769 1.21058 1.21042 1.20495 0.96958 1.01222 0.92358 1.20457 0.95890 0.94733 0.94711 1.21861 0.97035 0.99188 1.01537 1.22082 0.99884 1.01099 0.96857 1.21516 1.00302 0.94864 0.96295 0.92924 0.93285 0.92246 0.92939 0.93250 0.92880 0.88458 0.92919 0.92990 0.96643 0.96572 0.93145 0.90764 0.91666 0.93640 0.92576 0.91518 0.93120 0.92551 0.93099 0.92532 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.10 37.40 0.30 -1.49 16 2 C -0.02 -0.28 0.66 -155.88 -0.10 -0.39 16 3 C -0.14 -1.62 7.94 37.72 0.30 -1.32 16 4 C -0.17 -2.89 6.99 -36.06 -0.25 -3.15 16 5 C -0.09 -1.63 4.37 -101.07 -0.44 -2.07 16 6 C -0.08 -1.79 5.16 -28.07 -0.14 -1.93 16 7 C 0.03 0.86 4.95 -27.88 -0.14 0.72 16 8 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 12 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 C -0.07 -1.17 4.62 -28.15 -0.13 -1.30 16 17 C -0.06 -0.81 0.71 -154.38 -0.11 -0.92 16 18 C -0.14 -2.14 7.89 37.14 0.29 -1.85 16 19 C -0.14 -1.69 8.34 37.59 0.31 -1.37 16 20 C -0.09 -1.18 3.81 -27.56 -0.11 -1.29 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.54 8.00 -51.93 -0.42 0.13 16 23 H 0.06 0.83 6.59 -51.93 -0.34 0.49 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 1.72 7.80 -52.33 -0.41 1.31 16 28 H 0.05 1.10 8.12 -51.93 -0.42 0.68 16 29 H 0.05 1.10 7.84 -51.93 -0.41 0.70 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.07 1.29 8.08 -51.99 -0.42 0.87 16 34 H 0.06 0.96 8.13 -52.01 -0.42 0.53 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.17 5.50 -51.93 -0.29 0.88 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.67 7.68 -51.36 -0.39 0.28 16 42 H 0.05 0.66 7.64 -51.35 -0.39 0.27 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -29.60 323.29 -8.14 -37.75 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -8.10 Total: -2.97 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: -0.63 Total: -30.09 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.60 -8.14 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.713 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds