Wall clock time and date at job start Sun Mar 29 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53461 * 1 3 3 C 1.54081 * 107.59960 * 2 1 4 4 C 1.49642 * 109.18513 * 116.96666 * 2 1 3 5 5 C 1.29286 * 124.71929 * 129.58725 * 4 2 1 6 6 C 1.50327 * 118.96637 * 177.98474 * 5 4 2 7 7 C 1.52997 * 109.47014 * 94.99797 * 6 5 4 8 8 C 1.50701 * 109.46982 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99936 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00225 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99780 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47400 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47034 * 120.00188 * 12 10 8 15 15 H 1.48498 * 109.47226 * 239.99985 * 12 10 8 16 16 C 1.50102 * 122.35772 * 357.99609 * 5 4 2 17 17 C 1.53038 * 109.01117 * 330.09110 * 16 5 4 18 18 C 1.52972 * 109.83790 * 293.04752 * 17 16 5 19 19 C 1.53836 * 108.41339 * 174.71313 * 17 16 5 20 20 C 1.51980 * 109.78557 * 242.29644 * 2 1 3 21 21 H 1.09002 * 109.47366 * 303.03374 * 1 2 3 22 22 H 1.09001 * 109.46960 * 63.03688 * 1 2 3 23 23 H 1.09004 * 109.47407 * 183.03168 * 1 2 3 24 24 H 1.09005 * 109.46810 * 177.74238 * 3 2 1 25 25 H 1.08998 * 109.46992 * 297.74219 * 3 2 1 26 26 H 1.09002 * 109.47219 * 57.74176 * 3 2 1 27 27 H 1.08282 * 117.78797 * 308.61172 * 4 2 1 28 28 H 1.09003 * 109.46923 * 214.99476 * 6 5 4 29 29 H 1.08997 * 109.47132 * 334.99497 * 6 5 4 30 30 H 1.08996 * 109.47331 * 299.99414 * 7 6 5 31 31 H 1.08997 * 109.47416 * 59.99874 * 7 6 5 32 32 H 0.97001 * 120.00710 * 180.02562 * 11 10 8 33 33 H 1.08898 * 109.46500 * 210.34064 * 16 5 4 34 34 H 1.08857 * 109.53534 * 89.95360 * 16 5 4 35 35 H 1.08995 * 109.47465 * 181.90519 * 18 17 16 36 36 H 1.08999 * 109.46974 * 301.90382 * 18 17 16 37 37 H 1.09003 * 109.46914 * 61.89943 * 18 17 16 38 38 H 1.09005 * 109.46892 * 300.39057 * 19 17 16 39 39 H 1.09007 * 109.47270 * 60.38568 * 19 17 16 40 40 H 1.08995 * 109.47799 * 180.38764 * 19 17 16 41 41 H 1.10004 * 109.01759 * 21.29757 * 20 2 1 42 42 H 1.10013 * 108.96758 * 137.49843 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5346 0.0000 0.0000 3 6 2.0005 1.4687 0.0000 4 6 2.0264 -0.6409 1.2596 5 6 2.9079 -1.5853 1.3098 6 6 3.3425 -2.1051 2.6517 7 6 2.5188 -3.3436 3.0100 8 6 2.9549 -3.8651 4.3550 9 1 3.7412 -3.3635 4.8996 10 6 2.3499 -4.9825 4.8903 11 7 1.3928 -5.5936 4.2270 12 14 2.8910 -5.6293 6.5571 13 1 3.9773 -4.7700 7.0928 14 1 1.7384 -5.6103 7.4933 15 1 3.3870 -7.0213 6.4108 16 6 3.5155 -2.1834 0.0744 17 6 2.5000 -2.1070 -1.0679 18 6 1.3113 -3.0219 -0.7678 19 6 3.1803 -2.5996 -2.3567 20 6 2.0491 -0.6648 -1.2661 21 1 -0.3634 0.5602 0.8615 22 1 -0.3633 0.4660 -0.9160 23 1 -0.3634 -1.0262 0.0544 24 1 3.0892 1.5045 0.0405 25 1 1.6544 1.9596 -0.9095 26 1 1.5875 1.9809 0.8691 27 1 1.6277 -0.2790 2.1991 28 1 4.3992 -2.3699 2.6139 29 1 3.1878 -1.3348 3.4072 30 1 1.4622 -3.0788 3.0478 31 1 2.6735 -4.1139 2.2545 32 1 0.9670 -6.3795 4.6037 33 1 3.7719 -3.2248 0.2638 34 1 4.4113 -1.6274 -0.1965 35 1 0.6082 -2.9888 -1.6000 36 1 1.6648 -4.0439 -0.6313 37 1 0.8140 -2.6849 0.1417 38 1 4.0436 -1.9710 -2.5750 39 1 3.5064 -3.6313 -2.2239 40 1 2.4731 -2.5459 -3.1843 41 1 1.2586 -0.6397 -2.0308 42 1 2.8919 -0.0782 -1.6609 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:07 Heat of formation + Delta-G solvation = -49.002855 kcal Electronic energy + Delta-G solvation = -17630.426121 eV Core-core repulsion = 15187.076335 eV Total energy + Delta-G solvation = -2443.349786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 236.184 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93036 -36.42530 -35.74278 -34.50760 -31.15939 -28.55570 -27.55900 -27.51046 -27.34213 -26.84022 -23.38413 -20.89540 -20.48862 -18.54022 -17.59802 -16.54588 -16.33742 -16.05405 -15.23221 -15.00789 -14.80049 -14.36659 -14.19509 -14.05905 -13.51881 -13.39056 -13.10139 -13.00714 -12.91903 -12.71269 -12.65115 -12.49683 -12.38644 -12.34088 -12.03163 -11.93914 -11.64732 -11.60257 -11.32517 -11.24702 -10.91646 -10.66950 -10.57021 -9.43529 -8.21002 -6.33253 1.37276 1.37887 1.50056 1.53669 2.39437 3.11072 3.66252 3.79704 3.91042 4.16082 4.24905 4.31888 4.38286 4.43067 4.63201 4.74635 4.77823 4.83433 4.87952 4.89344 4.92318 4.97085 4.98652 5.01380 5.04875 5.09815 5.10816 5.16821 5.23261 5.32800 5.37146 5.42518 5.48357 5.55506 5.57495 5.60948 5.68760 5.84079 5.96016 6.23557 6.34161 6.83940 7.36006 8.90425 Molecular weight = 236.18amu Principal moments of inertia in cm(-1) A = 0.030438 B = 0.006054 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.682186 B = 4623.806651 C = 4920.704544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C -0.132 4.132 4 C -0.157 4.157 5 C -0.114 4.114 6 C -0.072 4.072 7 C 0.045 3.955 8 C -0.546 4.546 9 H 0.058 0.942 10 C 0.000 4.000 11 N -0.932 5.932 12 Si 0.965 3.035 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.276 1.276 16 C -0.070 4.070 17 C -0.056 4.056 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.091 4.091 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.048 0.952 30 H -0.017 1.017 31 H -0.011 1.011 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 11.408 -13.266 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 C -0.189 4.189 4 C -0.176 4.176 5 C -0.114 4.114 6 C -0.110 4.110 7 C 0.008 3.992 8 C -0.584 4.584 9 H 0.076 0.924 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.789 3.211 13 H -0.186 1.186 14 H -0.203 1.203 15 H -0.202 1.202 16 C -0.107 4.107 17 C -0.056 4.056 18 C -0.193 4.193 19 C -0.194 4.194 20 C -0.128 4.128 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.002 0.998 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.184 11.285 -13.265 17.456 hybrid contribution -0.045 -0.903 1.397 1.664 sum 1.139 10.382 -11.868 15.809 Atomic orbital electron populations 1.22057 0.94093 1.01212 1.02121 1.19289 0.95529 0.95621 0.92015 1.22106 1.00892 0.93751 1.02139 1.21695 0.98740 0.98968 0.98157 1.20914 0.98507 0.96521 0.95488 1.20596 0.99159 0.97490 0.93744 1.18802 0.93571 0.92252 0.94575 1.21771 1.19834 1.11985 1.04851 0.92396 1.25988 0.94940 0.96951 1.01851 1.70113 1.26073 1.20886 1.40121 0.85403 0.78455 0.78276 0.78950 1.18629 1.20262 1.20150 1.20479 0.98240 0.99669 0.92282 1.20458 0.94634 0.95609 0.94909 1.21827 0.98122 0.98331 1.01024 1.22030 1.00665 1.00840 0.95871 1.21512 1.01610 0.93655 0.96062 0.93145 0.90622 0.94036 0.92980 0.90831 0.93057 0.90150 0.92822 0.93329 0.99833 0.99231 0.92779 0.93234 0.89907 0.91426 0.94684 0.94406 0.91545 0.93369 0.91400 0.90627 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.10 72.14 0.58 -2.74 16 2 C -0.02 -0.62 0.66 -53.07 -0.04 -0.66 16 3 C -0.13 -2.74 7.94 72.35 0.57 -2.16 16 4 C -0.16 -5.29 6.99 27.06 0.19 -5.10 16 5 C -0.11 -4.24 4.37 -15.05 -0.07 -4.30 16 6 C -0.07 -3.24 5.16 29.73 0.15 -3.09 16 7 C 0.05 2.51 4.95 29.85 0.15 2.66 16 8 C -0.55 -32.49 9.11 25.60 0.23 -32.26 16 9 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 10 C 0.00 0.03 5.46 84.66 0.46 0.49 16 11 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 12 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 13 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 16 C -0.07 -2.24 4.62 29.67 0.14 -2.10 16 17 C -0.06 -1.50 0.71 -52.10 -0.04 -1.53 16 18 C -0.14 -4.23 7.89 71.97 0.57 -3.67 16 19 C -0.14 -2.92 8.34 72.26 0.60 -2.31 16 20 C -0.09 -2.06 3.81 30.06 0.11 -1.94 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.43 8.00 -2.39 -0.02 1.41 16 23 H 0.04 1.14 6.59 -2.39 -0.02 1.12 16 24 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 2.93 7.80 -2.76 -0.02 2.91 16 28 H 0.05 2.33 8.12 -2.39 -0.02 2.31 16 29 H 0.05 2.15 7.84 -2.39 -0.02 2.13 16 30 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.05 1.80 8.08 -2.44 -0.02 1.78 16 34 H 0.08 2.32 8.13 -2.46 -0.02 2.30 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.04 1.37 5.50 -2.39 -0.01 1.36 16 38 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.47 7.68 -1.85 -0.01 1.46 16 42 H 0.07 1.44 7.64 -1.85 -0.01 1.42 16 Total: -1.00 -65.79 323.29 6.88 -58.91 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.94 Total: 10.39 kcal Atomic # 6 Polarization: -62.35 SS G_CDS: 3.63 Total: -58.72 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.28 Total: -58.08 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -65.79 6.88 -58.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.906 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds