Wall clock time and date at job start Sun Mar 29 2020 21:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46761 * 2 1 4 4 C 1.52999 * 109.47393 * 239.99680 * 2 1 3 5 5 N 1.46502 * 109.46913 * 119.99861 * 2 1 3 6 6 C 1.34944 * 126.04064 * 75.26596 * 5 2 1 7 7 C 1.35314 * 107.74768 * 180.14747 * 6 5 2 8 8 C 1.50706 * 126.03683 * 179.87546 * 7 6 5 9 9 C 1.53000 * 109.46735 * 269.70716 * 8 7 6 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 C 1.39868 * 107.92023 * 359.60782 * 7 6 5 20 20 N 1.30834 * 108.20119 * 0.23908 * 19 7 6 21 21 H 1.08996 * 109.47192 * 299.99869 * 1 2 3 22 22 H 1.08993 * 109.47106 * 60.00378 * 1 2 3 23 23 H 1.09005 * 109.46846 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46467 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47002 * 299.99685 * 3 2 1 26 26 H 1.08996 * 109.47160 * 60.00112 * 3 2 1 27 27 H 1.08997 * 109.47455 * 299.99932 * 4 2 1 28 28 H 1.09007 * 109.46893 * 59.99974 * 4 2 1 29 29 H 1.08999 * 109.46896 * 179.97438 * 4 2 1 30 30 H 1.08000 * 126.12322 * 359.97438 * 6 5 2 31 31 H 1.09001 * 109.46797 * 149.71064 * 8 7 6 32 32 H 1.08992 * 109.47518 * 29.71061 * 8 7 6 33 33 H 1.09002 * 109.47398 * 300.00410 * 9 8 7 34 34 H 1.09001 * 109.47194 * 60.00591 * 9 8 7 35 35 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 37 37 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 38 38 H 1.07999 * 125.89678 * 180.22851 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0213 -2.0250 1.3970 7 6 2.5483 -2.2567 2.6215 8 6 2.7421 -3.6069 3.2624 9 6 1.4941 -3.9727 4.0684 10 6 1.6910 -5.3431 4.7195 11 6 0.4616 -5.7037 5.5128 12 1 -0.3766 -5.0236 5.5487 13 6 0.4064 -6.9023 6.1921 14 7 1.4270 -7.7307 6.1480 15 14 -1.1173 -7.3490 7.1761 16 1 -2.2946 -7.3943 6.2721 17 1 -0.9267 -8.6796 7.8069 18 1 -1.3422 -6.3282 8.2308 19 6 2.8871 -1.0221 3.1849 20 7 2.5699 -0.0827 2.3314 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6768 -1.7490 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1301 -0.7209 -1.2493 30 1 1.6642 -2.7737 0.7054 31 1 3.6063 -3.5734 3.9259 32 1 2.9073 -4.3562 2.4883 33 1 1.3290 -3.2233 4.8425 34 1 0.6300 -4.0061 3.4048 35 1 1.8564 -6.0927 3.9456 36 1 2.5551 -5.3094 5.3831 37 1 1.3880 -8.5741 6.6255 38 1 3.3332 -0.8706 4.1567 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:21 Heat of formation + Delta-G solvation = 46.335291 kcal Electronic energy + Delta-G solvation = -16331.749404 eV Core-core repulsion = 13788.993446 eV Total energy + Delta-G solvation = -2542.755958 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11435 -36.97612 -34.49643 -32.35134 -30.44016 -29.65997 -27.71583 -27.64109 -26.21958 -23.34450 -22.23189 -20.24726 -19.60932 -19.11730 -16.76464 -16.08250 -15.24750 -14.57434 -14.44575 -14.25002 -13.90571 -13.70608 -13.15107 -12.71114 -12.54376 -12.36514 -12.35330 -12.07625 -12.02988 -11.80031 -11.39115 -11.29848 -11.14248 -10.74996 -10.60043 -10.47380 -10.19894 -9.52622 -9.24490 -9.14202 -9.02949 -8.27047 -7.92517 -5.92700 -3.94370 2.14073 2.58742 3.14599 3.37662 3.41622 3.44657 4.27000 4.51849 4.52268 4.62349 4.97004 5.10354 5.18753 5.29080 5.38840 5.42700 5.44194 5.50318 5.52673 5.69428 5.73903 5.82290 5.92529 6.00666 6.15977 6.32490 6.40858 6.54581 6.94100 7.00587 7.08365 7.26142 7.32699 7.77612 7.94465 7.98105 8.09387 8.52959 9.13113 9.69087 11.18606 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042125 B = 0.004176 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.527258 B = 6703.383570 C = 6891.427278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 C -0.142 4.142 4 C -0.159 4.159 5 N -0.369 5.369 6 C 0.046 3.954 7 C -0.215 4.215 8 C -0.044 4.044 9 C -0.102 4.102 10 C 0.019 3.981 11 C -0.518 4.518 12 H 0.053 0.947 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.047 3.953 20 N -0.302 5.302 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.166 0.834 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 15.338 -14.630 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.099 3.901 3 C -0.199 4.199 4 C -0.217 4.217 5 N -0.153 5.153 6 C -0.099 4.099 7 C -0.226 4.226 8 C -0.083 4.083 9 C -0.140 4.140 10 C -0.018 4.018 11 C -0.557 4.557 12 H 0.071 0.929 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.139 4.139 20 N -0.123 5.123 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.183 0.817 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.335 16.501 -14.927 22.291 hybrid contribution -0.886 -1.322 0.780 1.772 sum 0.448 15.180 -14.147 20.755 Atomic orbital electron populations 1.22266 0.93246 1.03237 1.03071 1.20610 0.94213 0.93537 0.81736 1.21884 1.02045 0.93197 1.02786 1.22236 1.02266 1.01177 0.96062 1.48706 1.48576 1.04215 1.13843 1.22165 1.02775 0.86148 0.98785 1.20392 1.09794 0.96990 0.95474 1.20059 0.99634 0.90243 0.98364 1.21605 0.94959 0.99674 0.97716 1.19125 0.96835 0.90517 0.95285 1.21265 1.01735 1.02926 1.29742 0.92889 1.25021 0.96151 0.96555 0.96759 1.69961 1.30307 1.10164 1.43249 0.86689 0.83584 0.77502 0.80407 1.20334 1.21329 1.20278 1.23792 1.00283 0.90567 0.99259 1.77201 1.18302 1.22270 0.94550 0.91632 0.90708 0.91679 0.91777 0.91285 0.91082 0.91501 0.90380 0.91596 0.81697 0.91770 0.92161 0.93573 0.93830 0.96729 0.96620 0.93055 0.80409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.73 37.16 0.32 -1.12 16 2 C 0.18 1.83 1.24 -131.82 -0.16 1.67 16 3 C -0.14 -1.30 8.09 37.16 0.30 -1.00 16 4 C -0.16 -1.27 8.29 37.16 0.31 -0.96 16 5 N -0.37 -5.05 3.43 -48.65 -0.17 -5.22 16 6 C 0.05 0.66 10.51 -17.23 -0.18 0.48 16 7 C -0.22 -3.48 5.35 -105.05 -0.56 -4.04 16 8 C -0.04 -0.79 5.70 -27.88 -0.16 -0.94 16 9 C -0.10 -2.17 5.13 -26.73 -0.14 -2.31 16 10 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 11 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 15 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 C 0.05 0.73 11.96 -17.37 -0.21 0.52 16 20 N -0.30 -4.72 11.66 30.62 0.36 -4.36 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.74 8.04 -51.93 -0.42 0.33 16 27 H 0.07 0.52 7.36 -51.93 -0.38 0.14 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.17 2.00 7.55 -52.49 -0.40 1.60 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -32.36 316.69 -7.01 -39.37 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.66 Total: -3.73 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -1.03 Total: -21.19 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.93 Total: -36.28 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.36 -7.01 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.702 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds