Wall clock time and date at job start Sun Mar 29 2020 21:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46761 * 2 1 4 4 C 1.52999 * 109.47393 * 239.99680 * 2 1 3 5 5 N 1.46502 * 109.46913 * 119.99861 * 2 1 3 6 6 C 1.34944 * 126.04064 * 75.26596 * 5 2 1 7 7 C 1.35314 * 107.74768 * 180.14747 * 6 5 2 8 8 C 1.50706 * 126.03683 * 179.87546 * 7 6 5 9 9 C 1.53000 * 109.46735 * 269.70716 * 8 7 6 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 C 1.39868 * 107.92023 * 359.60782 * 7 6 5 20 20 N 1.30834 * 108.20119 * 0.23908 * 19 7 6 21 21 H 1.08996 * 109.47192 * 299.99869 * 1 2 3 22 22 H 1.08993 * 109.47106 * 60.00378 * 1 2 3 23 23 H 1.09005 * 109.46846 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46467 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47002 * 299.99685 * 3 2 1 26 26 H 1.08996 * 109.47160 * 60.00112 * 3 2 1 27 27 H 1.08997 * 109.47455 * 299.99932 * 4 2 1 28 28 H 1.09007 * 109.46893 * 59.99974 * 4 2 1 29 29 H 1.08999 * 109.46896 * 179.97438 * 4 2 1 30 30 H 1.08000 * 126.12322 * 359.97438 * 6 5 2 31 31 H 1.09001 * 109.46797 * 149.71064 * 8 7 6 32 32 H 1.08992 * 109.47518 * 29.71061 * 8 7 6 33 33 H 1.09002 * 109.47398 * 300.00410 * 9 8 7 34 34 H 1.09001 * 109.47194 * 60.00591 * 9 8 7 35 35 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 37 37 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 38 38 H 1.07999 * 125.89678 * 180.22851 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0213 -2.0250 1.3970 7 6 2.5483 -2.2567 2.6215 8 6 2.7421 -3.6069 3.2624 9 6 1.4941 -3.9727 4.0684 10 6 1.6910 -5.3431 4.7195 11 6 0.4616 -5.7037 5.5128 12 1 -0.3766 -5.0236 5.5487 13 6 0.4064 -6.9023 6.1921 14 7 1.4270 -7.7307 6.1480 15 14 -1.1173 -7.3490 7.1761 16 1 -2.2946 -7.3943 6.2721 17 1 -0.9267 -8.6796 7.8069 18 1 -1.3422 -6.3282 8.2308 19 6 2.8871 -1.0221 3.1849 20 7 2.5699 -0.0827 2.3314 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6768 -1.7490 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1301 -0.7209 -1.2493 30 1 1.6642 -2.7737 0.7054 31 1 3.6063 -3.5734 3.9259 32 1 2.9073 -4.3562 2.4883 33 1 1.3290 -3.2233 4.8425 34 1 0.6300 -4.0061 3.4048 35 1 1.8564 -6.0927 3.9456 36 1 2.5551 -5.3094 5.3831 37 1 1.3880 -8.5741 6.6255 38 1 3.3332 -0.8706 4.1567 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:21 Heat of formation + Delta-G solvation = 28.318926 kcal Electronic energy + Delta-G solvation = -16332.530652 eV Core-core repulsion = 13788.993446 eV Total energy + Delta-G solvation = -2543.537206 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.22138 -37.86083 -36.29622 -34.32019 -31.53474 -31.26431 -28.56886 -28.35147 -27.78878 -25.11701 -23.36550 -22.04322 -20.83905 -20.15059 -18.42965 -17.59173 -16.51799 -16.16170 -15.72497 -15.47058 -15.04590 -14.68293 -14.57861 -14.01605 -13.87572 -13.67359 -13.20053 -13.14695 -13.12640 -12.91641 -12.74279 -12.56669 -12.46544 -12.35920 -12.13138 -12.07288 -11.60122 -11.31885 -11.22822 -11.03645 -10.51393 -10.24997 -9.16593 -8.16604 -6.27632 1.01681 1.40563 1.43786 1.51791 1.62882 1.91820 2.43349 3.15689 3.46740 3.79389 3.90709 3.96985 4.09003 4.33823 4.43749 4.57670 4.60566 4.70701 4.71490 4.77431 4.81558 4.84015 4.86939 4.94045 5.03151 5.08825 5.23890 5.27652 5.33904 5.35600 5.42808 5.58862 5.79793 5.85747 5.92834 6.25961 6.31670 6.82729 6.89416 7.41093 8.94699 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042125 B = 0.004176 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.527258 B = 6703.383570 C = 6891.427278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 C -0.137 4.137 4 C -0.155 4.155 5 N -0.364 5.364 6 C 0.054 3.946 7 C -0.241 4.241 8 C -0.030 4.030 9 C -0.086 4.086 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.055 0.945 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.269 1.269 19 C 0.036 3.964 20 N -0.321 5.321 21 H 0.046 0.954 22 H 0.105 0.895 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.189 0.811 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.043 0.957 35 H -0.006 1.006 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 16.128 -15.978 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.087 3.913 3 C -0.195 4.195 4 C -0.213 4.213 5 N -0.147 5.147 6 C -0.093 4.093 7 C -0.252 4.252 8 C -0.069 4.069 9 C -0.124 4.124 10 C -0.014 4.014 11 C -0.583 4.583 12 H 0.073 0.927 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.194 1.194 19 C -0.149 4.149 20 N -0.143 5.143 21 H 0.065 0.935 22 H 0.124 0.876 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.206 0.794 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.012 0.988 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.043 17.323 -16.289 23.779 hybrid contribution -0.477 -1.531 1.129 1.961 sum -0.433 15.793 -15.160 21.896 Atomic orbital electron populations 1.22262 0.92238 1.03209 1.03718 1.21098 0.95018 0.94031 0.81181 1.21877 1.01311 0.92805 1.03491 1.22243 1.01742 1.01454 0.95851 1.49119 1.47295 1.04177 1.14150 1.22499 1.01301 0.86985 0.98466 1.20255 1.12171 0.96156 0.96655 1.19802 0.97549 0.91563 0.97999 1.21385 0.96895 0.96449 0.97656 1.19047 0.95223 0.92855 0.94320 1.21703 1.02642 1.03460 1.30474 0.92665 1.25962 0.99602 0.96382 0.97806 1.70091 1.32494 1.10640 1.44103 0.85538 0.79415 0.77436 0.78887 1.19196 1.20635 1.19351 1.24036 1.00490 0.90469 0.99939 1.77163 1.18991 1.22748 0.95357 0.93452 0.87599 0.92024 0.92865 0.88106 0.92830 0.91247 0.87490 0.92420 0.79432 0.91910 0.91731 0.94087 0.93828 0.98757 0.98933 0.92775 0.79334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.73 71.98 0.63 -1.82 16 2 C 0.17 3.02 1.24 3.60 0.00 3.03 16 3 C -0.14 -2.26 8.09 71.98 0.58 -1.68 16 4 C -0.15 -2.01 8.29 71.98 0.60 -1.41 16 5 N -0.36 -9.49 3.43 -307.83 -1.06 -10.55 16 6 C 0.05 1.48 10.51 83.54 0.88 2.36 16 7 C -0.24 -7.67 5.35 -20.14 -0.11 -7.77 16 8 C -0.03 -1.08 5.70 29.85 0.17 -0.91 16 9 C -0.09 -3.72 5.13 30.59 0.16 -3.56 16 10 C 0.02 1.23 4.97 29.85 0.15 1.38 16 11 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 12 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 13 C 0.00 0.00 5.46 84.65 0.46 0.47 16 14 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 15 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 C 0.04 1.11 11.96 85.24 1.02 2.13 16 20 N -0.32 -9.88 11.66 -57.03 -0.66 -10.55 16 21 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 23 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 24 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 1.07 8.04 -2.39 -0.02 1.05 16 27 H 0.07 0.88 7.36 -2.39 -0.02 0.86 16 28 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.19 4.14 7.55 -2.91 -0.02 4.12 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.19 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -69.86 316.69 6.36 -63.51 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.99 Total: 7.54 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.77 Total: -39.63 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -1.44 Total: -78.59 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.86 6.36 -63.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.829 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds