Wall clock time and date at job start Sun Mar 29 2020 21:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.61535 * 2 1 4 4 C 1.53539 * 109.54515 * 120.22500 * 2 1 3 5 5 C 1.51486 * 107.29029 * 57.90881 * 4 2 1 6 6 O 1.21333 * 121.12409 * 221.90234 * 5 4 2 7 7 C 1.46658 * 117.74555 * 41.92059 * 5 4 2 8 8 C 1.32737 * 120.61648 * 348.57704 * 7 5 4 9 9 C 1.50699 * 118.40649 * 180.41032 * 8 7 5 10 10 C 1.53006 * 109.46866 * 95.00027 * 9 8 7 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46957 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00340 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46692 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47025 * 119.99570 * 16 14 12 19 19 H 1.48492 * 109.46854 * 239.99727 * 16 14 12 20 20 C 1.49984 * 123.19057 * 0.69386 * 8 7 5 21 21 H 1.09007 * 109.47178 * 299.76867 * 1 2 3 22 22 H 1.08996 * 109.47648 * 59.77587 * 1 2 3 23 23 H 1.09005 * 109.46805 * 179.77692 * 1 2 3 24 24 H 1.09001 * 109.46932 * 180.23261 * 3 2 1 25 25 H 1.09003 * 109.46950 * 300.22911 * 3 2 1 26 26 H 1.09000 * 109.47269 * 60.22928 * 3 2 1 27 27 H 1.08991 * 109.89728 * 298.45154 * 4 2 1 28 28 H 1.09002 * 109.88742 * 177.34745 * 4 2 1 29 29 H 1.08008 * 119.69288 * 168.60344 * 7 5 4 30 30 H 1.09000 * 109.47247 * 335.00196 * 9 8 7 31 31 H 1.09001 * 109.47358 * 214.99622 * 9 8 7 32 32 H 1.08993 * 109.46955 * 300.00219 * 10 9 8 33 33 H 1.09000 * 109.47050 * 60.00048 * 10 9 8 34 34 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 35 35 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 36 36 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 37 37 H 1.08990 * 109.14435 * 98.22893 * 20 8 7 38 38 H 1.09003 * 109.14077 * 217.36995 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0437 1.4413 0.0000 4 6 2.0437 -0.7284 1.2502 5 6 1.4702 -2.1302 1.2221 6 8 1.0409 -2.6525 2.2296 7 6 1.4518 -2.8347 -0.0641 8 6 1.7098 -2.1868 -1.1935 9 6 1.6681 -2.9576 -2.4877 10 6 0.2878 -2.8028 -3.1293 11 6 0.2457 -3.5849 -4.4436 12 6 -1.1137 -3.4319 -5.0760 13 1 -1.8716 -2.8361 -4.5892 14 6 -1.3898 -4.0526 -6.2758 15 7 -0.4666 -4.7777 -6.8687 16 14 -3.0745 -3.8624 -7.0599 17 1 -3.9265 -3.0024 -6.1997 18 1 -2.9297 -3.2358 -8.3983 19 1 -3.7068 -5.1982 -7.2044 20 6 2.0468 -0.7262 -1.2436 21 1 -0.3634 0.5103 0.8921 22 1 -0.3634 0.5173 -0.8879 23 1 -0.3633 -1.0277 -0.0040 24 1 3.1337 1.4385 -0.0042 25 1 1.6783 1.9572 -0.8880 26 1 1.6850 1.9548 0.8920 27 1 1.7077 -0.2080 2.1470 28 1 3.1327 -0.7728 1.2323 29 1 1.2258 -3.8905 -0.0926 30 1 1.8602 -4.0120 -2.2890 31 1 2.4292 -2.5711 -3.1656 32 1 -0.4733 -3.1893 -2.4515 33 1 0.0957 -1.7484 -3.3280 34 1 1.0067 -3.1980 -5.1213 35 1 0.4380 -4.6393 -4.2453 36 1 -0.6606 -5.2141 -7.7130 37 1 3.1288 -0.6109 -1.3052 38 1 1.5901 -0.2842 -2.1292 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:01 Heat of formation + Delta-G solvation = -66.308744 kcal Electronic energy + Delta-G solvation = -16656.199387 eV Core-core repulsion = 14076.266066 eV Total energy + Delta-G solvation = -2579.933321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26242 -37.57990 -35.41328 -33.22463 -31.29752 -29.25393 -27.48504 -27.09238 -26.80022 -23.71476 -21.08216 -20.30896 -19.75250 -17.24747 -16.36639 -15.94648 -15.65369 -14.78378 -14.68197 -14.50942 -14.04957 -13.77491 -13.23970 -13.08750 -12.58364 -12.33936 -12.26906 -12.07377 -11.85817 -11.75574 -11.47601 -11.05686 -10.97529 -10.77604 -10.75599 -10.69754 -10.48003 -9.74811 -9.61958 -9.27411 -9.16654 -8.75826 -8.37352 -6.02245 -4.04656 1.18454 2.97941 3.29693 3.37405 3.41535 4.17909 4.37786 4.44655 4.55958 4.61804 4.99952 5.14008 5.21499 5.33009 5.33847 5.39967 5.53175 5.54659 5.58711 5.73676 5.76031 5.85135 5.94112 5.97291 6.01048 6.10846 6.18020 6.24343 6.47612 6.48729 6.78819 6.83590 7.06608 7.64578 7.66381 7.77871 7.97508 8.39928 9.02631 9.59801 11.09082 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.033444 B = 0.004859 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.015256 B = 5760.570405 C = 5946.291475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.159 4.159 5 C 0.394 3.606 6 O -0.473 6.473 7 C -0.263 4.263 8 C -0.009 4.009 9 C -0.103 4.103 10 C -0.101 4.101 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.093 4.093 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.089 0.911 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 10.799 12.455 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.196 4.196 5 C 0.274 3.726 6 O -0.350 6.350 7 C -0.282 4.282 8 C -0.010 4.010 9 C -0.140 4.140 10 C -0.139 4.139 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.130 4.130 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.797 10.428 12.820 17.869 hybrid contribution -0.890 -0.063 -0.673 1.117 sum 5.907 10.365 12.147 17.026 Atomic orbital electron populations 1.21994 0.93757 1.02800 1.02266 1.20625 0.96391 0.95442 0.93327 1.21855 1.01005 0.94569 1.02323 1.22474 1.02335 0.95149 0.99691 1.22732 0.73810 0.88050 0.88024 1.90523 1.37690 1.69456 1.37314 1.22854 1.10687 1.01612 0.93007 1.22551 0.87569 0.95184 0.95707 1.21116 1.00711 0.99421 0.92786 1.21610 0.92472 1.00822 0.98999 1.19126 0.97070 0.95134 0.90347 1.21287 0.98435 1.30523 1.05613 0.92665 1.25020 0.96949 0.95253 0.97214 1.69970 1.33300 1.32760 1.17480 0.86554 0.84452 0.77893 0.79234 1.19740 1.20995 1.20993 1.20770 1.01854 0.91617 0.98736 0.92485 0.91668 0.92068 0.92359 0.91934 0.92345 0.89309 0.88394 0.85169 0.90924 0.90784 0.93127 0.93135 0.96526 0.96541 0.93047 0.89335 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.07 37.16 0.30 -1.37 16 2 C -0.06 -0.56 0.78 -154.23 -0.12 -0.68 16 3 C -0.14 -1.07 8.49 37.16 0.32 -0.75 16 4 C -0.16 -1.64 5.08 -27.22 -0.14 -1.78 16 5 C 0.39 5.50 5.77 -30.52 -0.18 5.33 16 6 O -0.47 -8.18 17.93 5.51 0.10 -8.08 16 7 C -0.26 -3.70 8.90 -38.06 -0.34 -4.04 16 8 C -0.01 -0.12 4.70 -101.57 -0.48 -0.60 16 9 C -0.10 -1.61 5.27 -27.88 -0.15 -1.75 16 10 C -0.10 -1.98 5.14 -26.73 -0.14 -2.12 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C -0.09 -0.99 4.48 -28.23 -0.13 -1.11 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.80 6.19 -51.93 -0.32 0.48 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.13 1.92 7.92 -52.48 -0.42 1.51 16 30 H 0.07 1.15 7.90 -51.93 -0.41 0.73 16 31 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 38 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -31.10 310.29 -7.71 -38.81 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -6.60 Total: -4.05 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -1.60 Total: -21.89 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.10 Total: -8.08 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.10 -7.71 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.501 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds