Wall clock time and date at job start Sun Mar 29 2020 21:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.61535 * 2 1 4 4 C 1.53539 * 109.54515 * 120.22500 * 2 1 3 5 5 C 1.51486 * 107.29029 * 57.90881 * 4 2 1 6 6 O 1.21333 * 121.12409 * 221.90234 * 5 4 2 7 7 C 1.46658 * 117.74555 * 41.92059 * 5 4 2 8 8 C 1.32737 * 120.61648 * 348.57704 * 7 5 4 9 9 C 1.50699 * 118.40649 * 180.41032 * 8 7 5 10 10 C 1.53006 * 109.46866 * 95.00027 * 9 8 7 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46957 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99816 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00340 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46692 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47025 * 119.99570 * 16 14 12 19 19 H 1.48492 * 109.46854 * 239.99727 * 16 14 12 20 20 C 1.49984 * 123.19057 * 0.69386 * 8 7 5 21 21 H 1.09007 * 109.47178 * 299.76867 * 1 2 3 22 22 H 1.08996 * 109.47648 * 59.77587 * 1 2 3 23 23 H 1.09005 * 109.46805 * 179.77692 * 1 2 3 24 24 H 1.09001 * 109.46932 * 180.23261 * 3 2 1 25 25 H 1.09003 * 109.46950 * 300.22911 * 3 2 1 26 26 H 1.09000 * 109.47269 * 60.22928 * 3 2 1 27 27 H 1.08991 * 109.89728 * 298.45154 * 4 2 1 28 28 H 1.09002 * 109.88742 * 177.34745 * 4 2 1 29 29 H 1.08008 * 119.69288 * 168.60344 * 7 5 4 30 30 H 1.09000 * 109.47247 * 335.00196 * 9 8 7 31 31 H 1.09001 * 109.47358 * 214.99622 * 9 8 7 32 32 H 1.08993 * 109.46955 * 300.00219 * 10 9 8 33 33 H 1.09000 * 109.47050 * 60.00048 * 10 9 8 34 34 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 35 35 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 36 36 H 0.97000 * 120.00540 * 180.02562 * 15 14 12 37 37 H 1.08990 * 109.14435 * 98.22893 * 20 8 7 38 38 H 1.09003 * 109.14077 * 217.36995 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0437 1.4413 0.0000 4 6 2.0437 -0.7284 1.2502 5 6 1.4702 -2.1302 1.2221 6 8 1.0409 -2.6525 2.2296 7 6 1.4518 -2.8347 -0.0641 8 6 1.7098 -2.1868 -1.1935 9 6 1.6681 -2.9576 -2.4877 10 6 0.2878 -2.8028 -3.1293 11 6 0.2457 -3.5849 -4.4436 12 6 -1.1137 -3.4319 -5.0760 13 1 -1.8716 -2.8361 -4.5892 14 6 -1.3898 -4.0526 -6.2758 15 7 -0.4666 -4.7777 -6.8687 16 14 -3.0745 -3.8624 -7.0599 17 1 -3.9265 -3.0024 -6.1997 18 1 -2.9297 -3.2358 -8.3983 19 1 -3.7068 -5.1982 -7.2044 20 6 2.0468 -0.7262 -1.2436 21 1 -0.3634 0.5103 0.8921 22 1 -0.3634 0.5173 -0.8879 23 1 -0.3633 -1.0277 -0.0040 24 1 3.1337 1.4385 -0.0042 25 1 1.6783 1.9572 -0.8880 26 1 1.6850 1.9548 0.8920 27 1 1.7077 -0.2080 2.1470 28 1 3.1327 -0.7728 1.2323 29 1 1.2258 -3.8905 -0.0926 30 1 1.8602 -4.0120 -2.2890 31 1 2.4292 -2.5711 -3.1656 32 1 -0.4733 -3.1893 -2.4515 33 1 0.0957 -1.7484 -3.3280 34 1 1.0067 -3.1980 -5.1213 35 1 0.4380 -4.6393 -4.2453 36 1 -0.6606 -5.2141 -7.7130 37 1 3.1288 -0.6109 -1.3052 38 1 1.5901 -0.2842 -2.1292 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:01 Heat of formation + Delta-G solvation = -82.846635 kcal Electronic energy + Delta-G solvation = -16656.916523 eV Core-core repulsion = 14076.266066 eV Total energy + Delta-G solvation = -2580.650457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27234 -38.69475 -36.78463 -35.03257 -32.93902 -30.38273 -28.56022 -28.31241 -27.69605 -25.48308 -22.56038 -21.65762 -20.80136 -18.48767 -18.15479 -17.09129 -16.75036 -16.49407 -15.85333 -15.73081 -15.14781 -14.98739 -14.64057 -14.19747 -14.04902 -13.74700 -13.31196 -13.12739 -13.04231 -12.79757 -12.78810 -12.50940 -12.42824 -12.39259 -11.99209 -11.75285 -11.58652 -11.43668 -11.32691 -11.17463 -10.56111 -10.42955 -10.00856 -8.20758 -6.31463 0.07915 1.39078 1.40004 1.52745 1.89084 2.40546 3.12722 3.19206 3.52721 3.61322 3.83372 4.01321 4.19560 4.31020 4.33805 4.43324 4.55477 4.66060 4.72646 4.76564 4.88696 4.92449 4.95978 4.97947 5.08251 5.12163 5.20212 5.20852 5.26082 5.33875 5.37682 5.49534 5.53138 5.64438 5.78840 5.86145 6.24946 6.58394 6.85842 7.37978 8.91046 Molecular weight = 236.15amu Principal moments of inertia in cm(-1) A = 0.033444 B = 0.004859 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.015256 B = 5760.570405 C = 5946.291475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.051 4.051 3 C -0.136 4.136 4 C -0.151 4.151 5 C 0.394 3.606 6 O -0.516 6.516 7 C -0.279 4.279 8 C 0.008 3.992 9 C -0.098 4.098 10 C -0.087 4.087 11 C 0.022 3.978 12 C -0.543 4.543 13 H 0.057 0.943 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.962 3.038 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.280 1.280 20 C -0.095 4.095 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.000 1.000 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 13.066 12.643 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.051 4.051 3 C -0.193 4.193 4 C -0.188 4.188 5 C 0.278 3.722 6 O -0.397 6.397 7 C -0.298 4.298 8 C 0.007 3.993 9 C -0.135 4.135 10 C -0.125 4.125 11 C -0.015 4.015 12 C -0.581 4.581 13 H 0.076 0.924 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.786 3.214 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.206 1.206 20 C -0.132 4.132 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.018 0.982 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.165 12.709 13.008 19.547 hybrid contribution -0.995 -0.822 -0.768 1.502 sum 6.170 11.888 12.240 18.144 Atomic orbital electron populations 1.22039 0.95142 1.01097 1.02915 1.20607 0.95230 0.96904 0.92379 1.21824 1.02061 0.92442 1.02938 1.22510 1.03663 0.92186 1.00473 1.23214 0.72585 0.89516 0.86921 1.90508 1.39898 1.70826 1.38421 1.22862 1.11705 1.01212 0.94062 1.22516 0.86456 0.96578 0.93745 1.20979 0.98615 0.99764 0.94169 1.21352 0.94765 1.00215 0.96167 1.19043 0.95508 0.94226 0.92687 1.21736 0.99657 1.30571 1.06137 0.92441 1.25940 1.01084 0.94799 0.97866 1.70089 1.35539 1.33638 1.18031 0.85447 0.79448 0.78057 0.78411 1.18748 1.20099 1.20573 1.20915 1.03728 0.89172 0.99338 0.91631 0.91332 0.94881 0.90656 0.91584 0.91574 0.88379 0.85710 0.87005 0.91718 0.89369 0.94122 0.92101 0.98206 0.99269 0.92768 0.86403 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.07 71.98 0.58 -2.58 16 2 C -0.05 -0.84 0.78 -52.00 -0.04 -0.88 16 3 C -0.14 -1.49 8.49 71.98 0.61 -0.88 16 4 C -0.15 -2.70 5.08 30.28 0.15 -2.54 16 5 C 0.39 10.81 5.77 28.14 0.16 10.97 16 6 O -0.52 -18.14 17.93 -3.19 -0.06 -18.20 16 7 C -0.28 -7.88 8.90 23.30 0.21 -7.67 16 8 C 0.01 0.20 4.70 -17.85 -0.08 0.11 16 9 C -0.10 -3.01 5.27 29.85 0.16 -2.85 16 10 C -0.09 -3.43 5.14 30.60 0.16 -3.27 16 11 C 0.02 1.16 4.97 29.85 0.15 1.30 16 12 C -0.54 -30.79 9.11 25.60 0.23 -30.55 16 13 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 14 C 0.00 0.05 5.46 84.65 0.46 0.51 16 15 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 16 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 C -0.10 -1.72 4.48 29.62 0.13 -1.59 16 21 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.03 0.85 6.19 -2.38 -0.01 0.83 16 24 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.11 3.49 7.92 -2.91 -0.02 3.47 16 30 H 0.06 2.08 7.90 -2.39 -0.02 2.06 16 31 H 0.09 2.48 8.12 -2.39 -0.02 2.46 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.12 1.54 8.13 -2.39 -0.02 1.52 16 38 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 Total: -1.00 -68.41 310.29 6.14 -62.27 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.00 Total: 5.82 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 2.88 Total: -39.92 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.06 Total: -18.20 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.41 6.14 -62.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.574 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds