Wall clock time and date at job start Sun Mar 29 2020 21:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 N 1.46499 * 109.46795 * 179.97438 * 3 2 1 5 5 N 1.40085 * 126.03695 * 89.97435 * 4 3 2 6 6 C 1.30833 * 108.20858 * 180.02562 * 5 4 3 7 7 C 1.50701 * 125.90276 * 180.02562 * 6 5 4 8 8 C 1.39877 * 108.20100 * 0.02562 * 6 5 4 9 9 C 1.34945 * 126.03790 * 269.99385 * 4 3 2 10 10 C 1.50698 * 126.12786 * 359.97438 * 9 4 3 11 11 C 1.53006 * 109.46784 * 264.99861 * 10 9 4 12 12 C 1.53003 * 109.47120 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47034 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00260 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99707 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00151 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99958 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47112 * 90.00104 * 17 15 13 19 19 H 1.48498 * 109.47392 * 210.00087 * 17 15 13 20 20 H 1.48507 * 109.47065 * 330.00216 * 17 15 13 21 21 H 1.08999 * 109.46796 * 300.00288 * 1 2 3 22 22 H 1.08993 * 109.46825 * 60.00105 * 1 2 3 23 23 H 1.08999 * 109.47072 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46796 * 239.99712 * 2 1 3 25 25 H 1.09001 * 109.47131 * 119.99723 * 2 1 3 26 26 H 1.08996 * 109.47439 * 59.99644 * 3 2 1 27 27 H 1.09001 * 109.46922 * 299.99851 * 3 2 1 28 28 H 1.08994 * 109.47140 * 90.02832 * 7 6 5 29 29 H 1.09000 * 109.46925 * 210.02877 * 7 6 5 30 30 H 1.08998 * 109.46805 * 330.02021 * 7 6 5 31 31 H 1.07996 * 126.04364 * 179.97438 * 8 6 5 32 32 H 1.08998 * 109.47253 * 24.99066 * 10 9 4 33 33 H 1.08996 * 109.47375 * 144.99527 * 10 9 4 34 34 H 1.08998 * 109.46577 * 299.99619 * 11 10 9 35 35 H 1.08996 * 109.47437 * 59.99704 * 11 10 9 36 36 H 1.09002 * 109.47037 * 299.99827 * 12 11 10 37 37 H 1.09001 * 109.47089 * 59.99122 * 12 11 10 38 38 H 0.96996 * 120.00281 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3297 1.4417 -1.1318 6 6 5.5750 1.4413 -0.7307 7 6 6.7904 1.4411 -1.6217 8 6 5.5835 1.4412 0.6680 9 6 4.2985 1.4427 1.0922 10 6 3.8364 1.4436 2.5265 11 6 3.8003 2.8810 3.0497 12 6 3.3305 2.8821 4.5058 13 6 3.2955 4.2977 5.0213 14 1 3.5803 5.1148 4.3752 15 6 2.8999 4.5496 6.3179 16 7 2.5536 3.5545 7.1049 17 14 2.8573 6.3043 6.9571 18 1 1.5190 6.8933 6.6976 19 1 3.1237 6.3056 8.4180 20 1 3.8952 7.1090 6.2639 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 7.0840 2.4686 -1.8360 29 1 7.6093 0.9265 -1.1190 30 1 6.5569 0.9277 -2.5545 31 1 6.4606 1.4405 1.2982 32 1 2.8382 1.0099 2.5870 33 1 4.5258 0.8541 3.1308 34 1 4.7984 3.3147 2.9893 35 1 3.1108 3.4704 2.4454 36 1 2.3322 2.4484 4.5658 37 1 4.0196 2.2924 5.1104 38 1 2.2749 3.7318 8.0169 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:58 Heat of formation + Delta-G solvation = 35.346654 kcal Electronic energy + Delta-G solvation = -16386.325019 eV Core-core repulsion = 13843.092558 eV Total energy + Delta-G solvation = -2543.232461 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05495 -35.59451 -34.77096 -32.72282 -31.94584 -29.83379 -28.73586 -26.76155 -25.20893 -23.52607 -21.80990 -20.43486 -19.97921 -18.94436 -16.59630 -16.04912 -15.30461 -15.06509 -14.48822 -14.21314 -13.77515 -13.53087 -13.33020 -12.92336 -12.70703 -12.41228 -12.11561 -12.07585 -11.93903 -11.73947 -11.34620 -11.32081 -10.90833 -10.85645 -10.73018 -10.53390 -10.26678 -9.74401 -9.44884 -9.15947 -8.71578 -8.36837 -8.16475 -6.01966 -4.04257 2.14539 2.71234 3.04175 3.30898 3.37350 3.41194 4.44744 4.59978 4.77337 4.92424 4.94441 5.09767 5.27450 5.33997 5.36846 5.43615 5.55985 5.59818 5.65765 5.80282 5.85821 5.89662 5.93847 6.02259 6.09632 6.13364 6.22663 6.38840 6.71249 6.80314 6.95890 7.04399 7.33141 7.64406 7.77390 7.97624 8.01985 8.40483 9.02609 9.60056 11.09306 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.005356 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.380969 B = 5226.602868 C = 6067.136841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.130 3.870 4 N -0.370 5.370 5 N -0.310 5.310 6 C 0.068 3.932 7 C -0.068 4.068 8 C -0.281 4.281 9 C 0.109 3.891 10 C -0.063 4.063 11 C -0.101 4.101 12 C 0.022 3.978 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.016 0.984 37 H 0.018 0.982 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -6.903 -14.289 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.009 3.991 4 N -0.151 5.151 5 N -0.133 5.133 6 C -0.098 4.098 7 C -0.127 4.127 8 C -0.310 4.310 9 C -0.018 4.018 10 C -0.102 4.102 11 C -0.139 4.139 12 C -0.015 4.015 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.161 0.839 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.294 -6.936 -15.125 16.642 hybrid contribution 0.400 0.971 1.200 1.594 sum 0.694 -5.965 -13.926 15.165 Atomic orbital electron populations 1.21701 0.94374 1.02297 1.02385 1.21918 0.96638 0.96065 1.03129 1.21761 0.74573 0.98228 1.04537 1.48503 1.05931 1.57462 1.03245 1.77182 1.01153 1.26699 1.08259 1.22222 0.93494 0.99947 0.94166 1.20113 0.92317 1.02620 0.97633 1.21079 0.96524 1.19270 0.94148 1.21438 0.90991 0.98330 0.91029 1.20533 1.01555 1.01004 0.87126 1.21623 1.01036 0.91686 0.99603 1.19113 0.96406 0.97161 0.88857 1.21241 1.44623 0.92960 0.97079 0.92730 1.25011 0.95375 0.96998 0.96983 1.69956 1.45468 1.30790 1.07291 0.86608 0.78384 0.85070 0.78043 1.20686 1.21184 1.19858 0.91929 0.92444 0.92133 0.91356 0.91242 0.88463 0.89129 0.90846 0.90687 0.91409 0.83892 0.91231 0.89567 0.92707 0.93609 0.96606 0.96357 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.14 -1.56 6.26 -26.73 -0.17 -1.73 16 3 C 0.13 1.69 6.04 -4.04 -0.02 1.67 16 4 N -0.37 -5.93 3.61 -57.14 -0.21 -6.14 16 5 N -0.31 -5.21 12.57 33.67 0.42 -4.78 16 6 C 0.07 1.03 7.22 -82.40 -0.59 0.44 16 7 C -0.07 -0.74 10.45 36.01 0.38 -0.37 16 8 C -0.28 -4.50 10.65 -40.01 -0.43 -4.93 16 9 C 0.11 1.82 6.18 -82.27 -0.51 1.31 16 10 C -0.06 -1.07 5.32 -27.88 -0.15 -1.22 16 11 C -0.10 -2.07 5.14 -26.73 -0.14 -2.20 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 17 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.10 1.26 7.54 -51.93 -0.39 0.87 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.07 1.11 7.49 -51.93 -0.39 0.72 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -31.53 320.16 -7.72 -39.25 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.66 Total: -2.75 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.81 Total: -21.05 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.95 Total: -36.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.53 -7.72 -39.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.599 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds