Wall clock time and date at job start Sun Mar 29 2020 21:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 N 1.46499 * 109.46795 * 179.97438 * 3 2 1 5 5 N 1.40085 * 126.03695 * 89.97435 * 4 3 2 6 6 C 1.30833 * 108.20858 * 180.02562 * 5 4 3 7 7 C 1.50701 * 125.90276 * 180.02562 * 6 5 4 8 8 C 1.39877 * 108.20100 * 0.02562 * 6 5 4 9 9 C 1.34945 * 126.03790 * 269.99385 * 4 3 2 10 10 C 1.50698 * 126.12786 * 359.97438 * 9 4 3 11 11 C 1.53006 * 109.46784 * 264.99861 * 10 9 4 12 12 C 1.53003 * 109.47120 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47034 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00260 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99707 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00151 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99958 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47112 * 90.00104 * 17 15 13 19 19 H 1.48498 * 109.47392 * 210.00087 * 17 15 13 20 20 H 1.48507 * 109.47065 * 330.00216 * 17 15 13 21 21 H 1.08999 * 109.46796 * 300.00288 * 1 2 3 22 22 H 1.08993 * 109.46825 * 60.00105 * 1 2 3 23 23 H 1.08999 * 109.47072 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46796 * 239.99712 * 2 1 3 25 25 H 1.09001 * 109.47131 * 119.99723 * 2 1 3 26 26 H 1.08996 * 109.47439 * 59.99644 * 3 2 1 27 27 H 1.09001 * 109.46922 * 299.99851 * 3 2 1 28 28 H 1.08994 * 109.47140 * 90.02832 * 7 6 5 29 29 H 1.09000 * 109.46925 * 210.02877 * 7 6 5 30 30 H 1.08998 * 109.46805 * 330.02021 * 7 6 5 31 31 H 1.07996 * 126.04364 * 179.97438 * 8 6 5 32 32 H 1.08998 * 109.47253 * 24.99066 * 10 9 4 33 33 H 1.08996 * 109.47375 * 144.99527 * 10 9 4 34 34 H 1.08998 * 109.46577 * 299.99619 * 11 10 9 35 35 H 1.08996 * 109.47437 * 59.99704 * 11 10 9 36 36 H 1.09002 * 109.47037 * 299.99827 * 12 11 10 37 37 H 1.09001 * 109.47089 * 59.99122 * 12 11 10 38 38 H 0.96996 * 120.00281 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3297 1.4417 -1.1318 6 6 5.5750 1.4413 -0.7307 7 6 6.7904 1.4411 -1.6217 8 6 5.5835 1.4412 0.6680 9 6 4.2985 1.4427 1.0922 10 6 3.8364 1.4436 2.5265 11 6 3.8003 2.8810 3.0497 12 6 3.3305 2.8821 4.5058 13 6 3.2955 4.2977 5.0213 14 1 3.5803 5.1148 4.3752 15 6 2.8999 4.5496 6.3179 16 7 2.5536 3.5545 7.1049 17 14 2.8573 6.3043 6.9571 18 1 1.5190 6.8933 6.6976 19 1 3.1237 6.3056 8.4180 20 1 3.8952 7.1090 6.2639 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 7.0840 2.4686 -1.8360 29 1 7.6093 0.9265 -1.1190 30 1 6.5569 0.9277 -2.5545 31 1 6.4606 1.4405 1.2982 32 1 2.8382 1.0099 2.5870 33 1 4.5258 0.8541 3.1308 34 1 4.7984 3.3147 2.9893 35 1 3.1108 3.4704 2.4454 36 1 2.3322 2.4484 4.5658 37 1 4.0196 2.2924 5.1104 38 1 2.2749 3.7318 8.0169 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:58 Heat of formation + Delta-G solvation = 18.420867 kcal Electronic energy + Delta-G solvation = -16387.058976 eV Core-core repulsion = 13843.092558 eV Total energy + Delta-G solvation = -2543.966418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.25604 -36.79318 -36.30660 -34.52518 -33.14654 -31.39130 -29.69286 -28.46408 -26.21464 -25.35411 -22.81148 -22.14234 -21.24461 -20.15484 -18.47975 -17.51808 -16.55430 -16.30840 -16.17291 -15.73197 -14.95715 -14.60814 -14.40029 -14.32271 -14.02250 -13.85297 -13.38259 -13.24224 -13.05147 -12.97679 -12.82183 -12.61530 -12.55115 -12.35870 -12.18676 -11.80872 -11.65413 -11.42982 -11.33454 -11.20285 -10.54570 -9.95481 -9.40523 -8.19764 -6.30274 0.90739 1.40502 1.41156 1.52405 1.59306 1.84687 2.41447 3.13661 3.55502 3.64932 3.86305 3.98158 4.02561 4.23995 4.33954 4.41054 4.48608 4.51022 4.68583 4.72228 4.80659 4.84907 4.86569 4.96960 5.03948 5.09843 5.10988 5.15544 5.19456 5.32034 5.37621 5.51880 5.74220 5.83876 5.85438 6.12861 6.26357 6.81963 6.85860 7.38826 8.91702 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.005356 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.380969 B = 5226.602868 C = 6067.136841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.123 3.877 4 N -0.375 5.375 5 N -0.333 5.333 6 C 0.063 3.937 7 C -0.066 4.066 8 C -0.291 4.291 9 C 0.094 3.906 10 C -0.050 4.050 11 C -0.084 4.084 12 C 0.026 3.974 13 C -0.545 4.545 14 H 0.055 0.945 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.960 3.040 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.266 1.266 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.042 0.958 36 H -0.002 1.002 37 H -0.002 1.002 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -6.395 -15.125 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.003 3.997 4 N -0.156 5.156 5 N -0.156 5.156 6 C -0.103 4.103 7 C -0.125 4.125 8 C -0.320 4.320 9 C -0.034 4.034 10 C -0.089 4.089 11 C -0.123 4.123 12 C -0.011 4.011 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.785 3.215 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.191 1.191 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.173 0.827 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.585 -6.432 -15.978 17.234 hybrid contribution 0.316 0.788 1.442 1.674 sum 0.902 -5.644 -14.536 15.619 Atomic orbital electron populations 1.21684 0.92646 1.03157 1.02820 1.21836 0.98002 0.94636 1.02372 1.21988 0.73400 0.99497 1.04856 1.48758 1.06804 1.57179 1.02908 1.77151 1.01966 1.27597 1.08841 1.22882 0.94243 0.98652 0.94511 1.20266 0.91053 1.03759 0.97418 1.21400 0.96747 1.18950 0.94939 1.21377 0.91651 0.99538 0.90804 1.20301 1.02302 0.98617 0.87689 1.21341 1.00302 0.94110 0.96499 1.19003 0.94996 0.95530 0.91567 1.21669 1.44726 0.94234 0.97632 0.92692 1.25898 0.94820 1.01454 0.97247 1.70073 1.46167 1.33091 1.07723 0.85517 0.78788 0.79707 0.77473 1.19782 1.20600 1.19052 0.92122 0.91376 0.91072 0.91836 0.92181 0.88733 0.88178 0.89712 0.88738 0.90555 0.82697 0.90539 0.88978 0.93066 0.93895 0.98381 0.98326 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.13 -2.82 6.26 30.60 0.19 -2.63 16 3 C 0.12 3.13 6.04 86.38 0.52 3.65 16 4 N -0.37 -11.78 3.61 -334.71 -1.21 -12.99 16 5 N -0.33 -10.82 12.57 -47.38 -0.60 -11.42 16 6 C 0.06 1.83 7.22 43.10 0.31 2.14 16 7 C -0.07 -1.30 10.45 71.24 0.74 -0.56 16 8 C -0.29 -9.00 10.65 21.99 0.23 -8.76 16 9 C 0.09 3.07 6.18 41.41 0.26 3.32 16 10 C -0.05 -1.68 5.32 29.85 0.16 -1.52 16 11 C -0.08 -3.45 5.14 30.60 0.16 -3.29 16 12 C 0.03 1.35 4.97 29.85 0.15 1.49 16 13 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 14 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 17 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.09 2.42 7.54 -2.39 -0.02 2.40 16 27 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.08 2.44 7.49 -2.39 -0.02 2.42 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -66.53 320.16 5.63 -60.90 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.00 Total: 10.85 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 4.13 Total: -37.87 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.52 Total: -79.95 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -66.53 5.63 -60.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.318 kcal (2) G-P(sol) polarization free energy of solvation -66.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds