Wall clock time and date at job start Sun Mar 29 2020 21:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47584 * 2 1 4 4 H 1.08997 * 109.47472 * 305.65995 * 3 2 1 5 5 C 1.50695 * 109.47348 * 185.65082 * 3 2 1 6 6 H 1.08001 * 120.00741 * 240.00380 * 5 3 2 7 7 C 1.37880 * 119.99951 * 60.00040 * 5 3 2 8 8 N 1.31513 * 119.99650 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00373 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.46997 * 90.00174 * 9 7 5 11 11 H 1.48503 * 109.47000 * 210.00339 * 9 7 5 12 12 H 1.48501 * 109.46811 * 330.00421 * 9 7 5 13 13 N 1.46904 * 109.46940 * 65.65696 * 3 2 1 14 14 C 1.46903 * 111.00102 * 205.38985 * 13 3 2 15 15 C 1.52999 * 109.47493 * 185.25526 * 14 13 3 16 16 C 1.47196 * 110.53560 * 57.38552 * 15 14 13 17 17 N 5.72120 * 106.84327 * 49.31105 * 2 1 3 18 18 C 1.54882 * 110.48529 * 180.02562 * 15 14 13 19 19 C 1.54897 * 102.74849 * 156.62006 * 18 15 14 20 20 C 1.54262 * 104.19296 * 322.05758 * 19 18 15 21 21 C 1.53876 * 106.60137 * 23.60844 * 20 19 18 22 22 H 1.09005 * 109.46414 * 55.57933 * 1 2 3 23 23 H 1.08997 * 109.47417 * 175.57596 * 1 2 3 24 24 H 1.08998 * 109.47432 * 295.58923 * 1 2 3 25 25 H 1.09003 * 109.47535 * 239.99621 * 2 1 3 26 26 H 1.09001 * 109.46918 * 120.00192 * 2 1 3 27 27 H 0.97003 * 120.00297 * 179.97438 * 8 7 5 28 28 H 1.00903 * 110.99838 * 329.33571 * 13 3 2 29 29 H 1.09000 * 109.47071 * 65.25111 * 14 13 3 30 30 H 1.09003 * 109.47043 * 305.25929 * 14 13 3 31 31 H 1.09003 * 110.75494 * 274.92983 * 18 15 14 32 32 H 1.08990 * 110.76009 * 38.30707 * 18 15 14 33 33 H 1.09004 * 110.48290 * 80.72862 * 19 18 15 34 34 H 1.08993 * 110.48921 * 203.37748 * 19 18 15 35 35 H 1.09001 * 110.03155 * 264.32446 * 20 19 18 36 36 H 1.09001 * 110.03413 * 142.89246 * 20 19 18 37 37 H 1.08998 * 110.03280 * 240.71368 * 21 20 19 38 38 H 1.09000 * 110.02907 * 119.28474 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5965 1.9847 -0.8349 5 6 3.5405 1.4447 -0.1399 6 1 4.1543 1.8862 0.6314 7 6 4.1300 0.8829 -1.2526 8 7 3.3827 0.3456 -2.1920 9 14 5.9899 0.8863 -1.4265 10 1 6.5464 -0.3475 -0.8155 11 1 6.3524 0.9329 -2.8658 12 1 6.5494 2.0761 -0.7362 13 7 1.6651 2.0944 1.2619 14 6 1.5755 3.5512 1.0955 15 6 1.3130 4.2046 2.4538 16 6 2.3712 3.8464 3.4123 17 7 3.1877 3.5699 4.1521 18 6 1.2136 5.7430 2.3052 19 6 0.3802 6.1531 3.5448 20 6 -0.6627 5.0256 3.6893 21 6 -0.0696 3.7867 2.9957 22 1 -0.3632 0.5810 -0.8478 23 1 -0.3634 -1.0246 -0.0793 24 1 -0.3634 0.4438 0.9268 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.7973 -0.0493 -2.9750 28 1 0.8005 1.7177 1.6205 29 1 0.7591 3.7895 0.4138 30 1 2.5126 3.9284 0.6859 31 1 2.2032 6.1989 2.3370 32 1 0.6937 6.0094 1.3850 33 1 1.0134 6.2028 4.4306 34 1 -0.1134 7.1096 3.3733 35 1 -1.5949 5.3148 3.2040 36 1 -0.8401 4.8140 4.7437 37 1 -0.7140 3.4746 2.1738 38 1 0.0407 2.9739 3.7135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:29 Heat of formation + Delta-G solvation = 3.072118 kcal Electronic energy + Delta-G solvation = -17110.120681 eV Core-core repulsion = 14565.488692 eV Total energy + Delta-G solvation = -2544.631990 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23778 -36.07354 -35.25090 -32.67092 -31.40681 -29.18359 -28.75400 -26.37461 -23.69768 -22.36842 -21.81179 -20.39710 -19.49240 -16.84998 -16.23605 -15.52732 -14.93013 -14.77912 -14.03994 -13.97365 -13.69400 -12.98507 -12.80048 -12.65055 -12.45854 -12.18820 -11.93736 -11.50853 -11.30134 -11.25244 -11.14562 -11.04580 -10.91667 -10.70494 -10.59970 -10.48873 -10.37784 -9.95559 -9.68308 -9.55335 -9.09135 -8.33734 -7.27569 -5.96581 -4.00248 3.26310 3.33920 3.35379 3.40178 3.45388 4.25033 4.45841 4.57939 4.60653 4.88130 5.13567 5.33183 5.39782 5.45469 5.52958 5.67804 5.69903 5.83009 5.86375 5.96085 6.10941 6.12722 6.15076 6.16358 6.21285 6.27740 6.39752 6.50622 6.82799 7.06081 7.16814 7.45411 7.77438 7.91773 8.13581 8.26127 8.38610 8.73018 9.07981 9.64997 11.08710 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.007133 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.985668 B = 3924.309315 C = 4524.303395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.688 5.688 14 C 0.081 3.919 15 C 0.033 3.967 16 C 0.245 3.755 17 N -0.449 5.449 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.111 4.111 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.100 0.900 26 H 0.040 0.960 27 H 0.259 0.741 28 H 0.318 0.682 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 8.978 6.270 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.320 5.320 14 C -0.050 4.050 15 C 0.029 3.971 16 C -0.073 4.073 17 N -0.124 5.124 18 C -0.149 4.149 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.150 4.150 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.118 0.882 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.067 8.469 7.449 13.867 hybrid contribution -0.069 -0.030 -0.993 0.995 sum -8.135 8.439 6.456 13.382 Atomic orbital electron populations 1.21877 0.99559 0.99737 0.99514 1.21771 0.91252 1.00346 1.03118 1.19137 0.95469 0.90010 0.84012 0.97793 1.21208 0.91311 1.36511 1.04119 0.92217 1.24932 0.98005 0.95627 0.95851 1.69865 1.34623 1.39591 1.09567 0.86578 0.85945 0.78488 0.76892 1.20775 1.21380 1.20025 1.60681 1.36378 1.01606 1.33337 1.21876 1.01602 0.90662 0.90854 1.19167 0.89395 0.96323 0.92255 1.28427 0.93546 0.92392 0.92928 1.81092 1.10326 1.09008 1.11968 1.22590 1.01048 0.92032 0.99201 1.22400 0.97497 0.98443 0.98094 1.22162 0.98606 0.94818 1.00614 1.22243 0.93692 0.98298 1.00778 0.93814 0.94405 0.94641 0.88201 0.94107 0.93097 0.86417 0.94506 0.89901 0.90768 0.89390 0.91794 0.91190 0.91388 0.91859 0.90128 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.67 37.16 0.36 -2.41 16 2 C -0.13 -2.92 5.36 -26.73 -0.14 -3.06 16 3 C 0.22 5.31 2.02 -68.87 -0.14 5.17 16 4 H 0.00 0.12 7.85 -51.93 -0.41 -0.29 16 5 C -0.49 -13.56 8.56 -34.44 -0.29 -13.85 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.27 11.29 55.43 0.63 -24.65 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.69 -13.82 5.79 -107.95 -0.62 -14.44 16 14 C 0.08 1.37 4.31 -3.82 -0.02 1.35 16 15 C 0.03 0.45 0.64 -155.64 -0.10 0.35 16 16 C 0.25 4.26 13.12 -20.76 -0.27 3.99 16 17 N -0.45 -9.00 18.54 42.15 0.78 -8.22 16 18 C -0.11 -1.18 5.79 -24.74 -0.14 -1.32 16 19 C -0.13 -1.18 6.59 -25.07 -0.17 -1.35 16 20 C -0.12 -1.14 6.80 -25.61 -0.17 -1.32 16 21 C -0.11 -1.27 5.12 -25.61 -0.13 -1.40 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.03 0.58 6.61 -51.93 -0.34 0.23 16 25 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.32 5.73 5.86 -39.29 -0.23 5.50 16 29 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.08 1.58 7.93 -51.93 -0.41 1.17 16 31 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 32 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 38 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 LS Contribution 306.83 15.07 4.62 4.62 Total: -1.00 -29.96 306.83 -7.20 -37.16 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.27 Total: 1.09 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.31 Total: -12.39 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.78 Total: -47.31 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.96 -7.20 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.236 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds